Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86940 * 2 1 4 4 C 1.53533 * 109.81798 * 239.10461 * 2 1 3 5 5 N 1.46860 * 109.89830 * 190.56334 * 4 2 1 6 6 C 1.46907 * 110.99528 * 308.59392 * 5 4 2 7 7 C 1.53002 * 109.47002 * 308.52979 * 6 5 4 8 8 C 1.50694 * 109.46841 * 185.28989 * 7 6 5 9 9 H 1.07995 * 120.00220 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99880 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99783 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00074 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47299 * 89.99921 * 12 10 8 14 14 H 1.48501 * 109.47418 * 210.00346 * 12 10 8 15 15 H 1.48502 * 109.47003 * 330.00176 * 12 10 8 16 16 C 1.47327 * 111.70197 * 73.05599 * 5 4 2 17 17 C 1.50857 * 108.03799 * 308.04131 * 16 5 4 18 18 C 1.34369 * 129.06959 * 196.62488 * 17 16 5 19 19 N 1.35268 * 107.60554 * 179.64195 * 18 17 16 20 20 H 0.97002 * 125.99834 * 180.02562 * 19 18 17 21 21 N 1.40386 * 108.01063 * 0.04907 * 19 18 17 22 22 C 1.29841 * 108.08804 * 0.05150 * 21 19 18 23 23 H 1.09000 * 109.47144 * 299.09721 * 1 2 3 24 24 H 1.08999 * 109.47456 * 59.09306 * 1 2 3 25 25 H 1.08996 * 109.47493 * 179.09815 * 1 2 3 26 26 H 1.08999 * 109.40458 * 310.69438 * 4 2 1 27 27 H 1.08997 * 109.40199 * 70.43222 * 4 2 1 28 28 H 1.08996 * 109.47362 * 68.53569 * 6 5 4 29 29 H 1.09000 * 109.46875 * 188.53395 * 6 5 4 30 30 H 1.08994 * 109.47632 * 305.30111 * 7 6 5 31 31 H 1.08998 * 109.46489 * 65.29755 * 7 6 5 32 32 H 0.97002 * 119.99390 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.74687 * 188.40470 * 16 5 4 34 34 H 1.09002 * 109.74667 * 67.67967 * 16 5 4 35 35 H 1.07999 * 126.19165 * 359.64347 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0505 -0.7417 -1.2394 5 7 3.4971 -0.9640 -1.1180 6 6 4.1970 0.2874 -0.7983 7 6 3.7811 1.3728 -1.7933 8 6 4.5939 2.6177 -1.5472 9 1 5.3333 2.6331 -0.7602 10 6 4.3934 3.7372 -2.3268 11 7 3.4926 3.7186 -3.2848 12 14 5.4013 5.2801 -2.0222 13 1 6.6375 5.2341 -2.8439 14 1 4.6027 6.4750 -2.3960 15 1 5.7652 5.3579 -0.5846 16 6 3.8063 -2.0098 -0.1274 17 6 3.0935 -1.6629 1.1560 18 6 3.3058 -2.1334 2.3966 19 7 2.4257 -1.5223 3.2222 20 1 2.3471 -1.6653 4.1784 21 7 1.6455 -0.6452 2.4524 22 6 2.0421 -0.7297 1.2189 23 1 -0.3633 0.4997 0.8980 24 1 -0.3634 0.5278 -0.8817 25 1 -0.3634 -1.0275 -0.0162 26 1 1.5426 -1.7022 -1.3266 27 1 1.8493 -0.1453 -2.1293 28 1 3.9362 0.6016 0.2123 29 1 5.2734 0.1284 -0.8630 30 1 3.9553 1.0201 -2.8097 31 1 2.7227 1.5984 -1.6633 32 1 3.3519 4.5061 -3.8334 33 1 4.8817 -2.0458 0.0466 34 1 3.4590 -2.9766 -0.4920 35 1 4.0454 -2.8667 2.6826 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931457312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = 47.978350 kcal Electronic energy + Delta-G solvation = -16987.712257 eV Core-core repulsion = 14406.913116 eV Total energy + Delta-G solvation = -2580.799142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.55489 -39.33404 -35.37099 -34.69445 -32.58354 -31.45600 -30.45793 -27.56062 -26.93695 -24.57653 -24.07429 -21.67224 -21.41748 -19.54676 -18.73571 -18.36584 -16.70763 -16.51795 -16.27357 -15.71796 -15.32901 -15.10122 -14.33122 -14.17856 -14.09195 -13.93182 -13.24737 -13.17793 -12.82887 -12.67160 -12.51006 -12.43342 -12.39767 -11.95168 -11.81158 -11.49117 -11.20735 -11.17035 -10.53263 -10.34179 -9.33962 -9.11729 -8.17183 -6.26971 0.99618 1.39869 1.41119 1.51670 1.75990 2.01649 2.41780 3.16176 3.20167 3.57979 3.84141 3.99354 4.21449 4.35552 4.48859 4.57140 4.61240 4.68209 4.71421 4.86574 4.88326 4.97719 5.06477 5.12406 5.15567 5.19624 5.29896 5.52104 5.65822 5.73129 5.86095 6.15093 6.37182 6.39181 6.53193 6.75037 6.89490 7.41081 8.94595 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.006777 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.644851 B = 4130.623655 C = 4214.844336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 H 0.063 0.937 4 C 0.073 3.927 5 N -0.541 5.541 6 C 0.083 3.917 7 C 0.034 3.966 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.005 3.995 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.134 3.866 17 C -0.298 4.298 18 C 0.087 3.913 19 N -0.481 5.481 20 H 0.452 0.548 21 N -0.322 5.322 22 C 0.079 3.921 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.058 0.942 30 H -0.004 1.004 31 H 0.004 0.996 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -13.691 10.672 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 H 0.082 0.918 4 C -0.055 4.055 5 N -0.262 5.262 6 C -0.044 4.044 7 C -0.004 4.004 8 C -0.582 4.582 9 H 0.071 0.929 10 C -0.193 4.193 11 N -0.568 5.568 12 Si 0.784 3.216 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.193 1.193 16 C 0.005 3.995 17 C -0.311 4.311 18 C -0.060 4.060 19 N -0.191 5.191 20 H 0.298 0.702 21 N -0.145 5.145 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.429 -13.220 10.885 17.296 hybrid contribution 0.571 1.066 0.714 1.404 sum -1.858 -12.154 11.599 16.903 Atomic orbital electron populations 1.21582 0.92312 1.02410 1.02090 1.20420 0.97571 0.98293 0.90929 0.91849 1.22156 0.87753 1.00139 0.95498 1.62339 1.08252 1.08665 1.46905 1.21900 0.97273 0.88814 0.96430 1.19008 0.95509 0.91987 0.93848 1.21609 1.21071 0.98726 1.16805 0.92885 1.25863 0.96483 1.02127 0.94820 1.70088 1.34909 1.30641 1.21129 0.85537 0.78749 0.78609 0.78693 1.19557 1.20631 1.19276 1.20754 0.99284 0.94909 0.84528 1.21242 1.04788 1.06548 0.98497 1.22595 0.95502 0.98610 0.89295 1.46426 1.28230 1.33476 1.10981 0.70178 1.76795 1.19115 1.14659 1.03891 1.22318 0.96148 0.97355 0.93125 0.92883 0.91540 0.91500 0.89169 0.91377 0.96917 0.92304 0.98605 0.97797 0.92786 0.89366 0.88313 0.76055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.17 71.98 0.66 -3.17 16 2 C -0.05 -1.81 2.35 -11.26 -0.03 -1.83 16 3 H 0.06 2.81 5.89 -2.39 -0.01 2.79 16 4 C 0.07 2.58 4.59 86.49 0.40 2.97 16 5 N -0.54 -19.64 5.04 -898.32 -4.52 -24.16 16 6 C 0.08 3.66 4.30 86.30 0.37 4.03 16 7 C 0.03 1.82 4.10 29.85 0.12 1.94 16 8 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 9 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 10 C 0.01 0.31 5.46 84.66 0.46 0.77 16 11 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 12 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.13 3.70 6.16 85.52 0.53 4.23 16 17 C -0.30 -8.46 5.37 -20.09 -0.11 -8.57 16 18 C 0.09 1.79 11.96 83.28 1.00 2.79 16 19 N -0.48 -10.93 7.37 -57.96 -0.43 -11.35 16 20 H 0.45 6.63 8.96 -213.13 -1.91 4.72 16 21 N -0.32 -10.52 12.62 -47.07 -0.59 -11.11 16 22 C 0.08 2.69 5.73 43.56 0.25 2.94 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 27 H 0.07 2.69 6.87 -2.39 -0.02 2.67 16 28 H 0.01 0.58 5.91 -2.39 -0.01 0.57 16 29 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.00 0.21 5.57 -2.39 -0.01 0.20 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.09 2.21 8.05 -2.39 -0.02 2.20 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.22 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -71.31 279.72 -0.17 -71.48 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -0.82 Total: 9.98 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 3.88 Total: -25.43 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -5.26 Total: -103.26 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.31 -0.17 -71.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931457312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.463 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds