Wall clock time and date at job start Sun Mar 29 2020 22:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03801 * 2 1 4 4 C 1.35323 * 107.74649 * 180.02562 * 3 2 1 5 5 C 1.39871 * 107.91775 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.89717 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.49844 * 154.93503 * 6 5 4 8 8 C 1.53043 * 109.49744 * 275.00015 * 6 5 4 9 9 C 1.53033 * 109.54073 * 181.31461 * 8 6 5 10 10 C 1.53195 * 109.31317 * 298.63402 * 9 8 6 11 11 N 1.46927 * 108.77358 * 54.63732 * 10 9 8 12 12 C 1.36934 * 120.63532 * 126.41798 * 11 10 9 13 13 H 1.08010 * 119.99399 * 332.60660 * 12 11 10 14 14 C 1.38802 * 120.00663 * 152.61021 * 12 11 10 15 15 N 1.31615 * 120.00562 * 159.34802 * 14 12 11 16 16 Si 1.86805 * 119.99858 * 339.34553 * 14 12 11 17 17 H 1.48501 * 109.46963 * 92.92740 * 16 14 12 18 18 H 1.48495 * 109.47338 * 212.92543 * 16 14 12 19 19 H 1.48499 * 109.47145 * 332.93059 * 16 14 12 20 20 C 1.46926 * 118.73416 * 306.38553 * 11 10 9 21 21 N 1.30838 * 108.20324 * 0.02562 * 5 4 3 22 22 H 1.09002 * 109.46761 * 90.00215 * 1 2 3 23 23 H 1.08996 * 109.47184 * 210.00475 * 1 2 3 24 24 H 1.08993 * 109.47162 * 330.00698 * 1 2 3 25 25 H 1.07998 * 126.12798 * 359.97438 * 3 2 1 26 26 H 1.08001 * 126.03840 * 179.73660 * 4 3 2 27 27 H 1.09006 * 109.45535 * 301.33705 * 8 6 5 28 28 H 1.09004 * 109.45796 * 61.30637 * 8 6 5 29 29 H 1.09005 * 109.49529 * 58.58428 * 9 8 6 30 30 H 1.08993 * 109.50065 * 178.64631 * 9 8 6 31 31 H 1.08997 * 109.58648 * 174.41923 * 10 9 8 32 32 H 1.08995 * 109.58621 * 294.70509 * 10 9 8 33 33 H 0.96998 * 120.00390 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.59214 * 293.82225 * 20 11 10 35 35 H 1.09004 * 109.58681 * 173.40132 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 3.5347 -0.7322 -0.0003 6 6 4.7496 -1.6237 -0.0003 7 1 4.4924 -2.5892 0.4352 8 6 5.2358 -1.8248 -1.4374 9 6 6.4499 -2.7564 -1.4415 10 6 7.5826 -2.1160 -0.6331 11 7 7.0793 -1.7866 0.7074 12 6 7.7315 -2.2312 1.8263 13 1 8.3138 -3.1401 1.7866 14 6 7.6442 -1.5142 3.0116 15 7 7.9035 -2.1049 4.1588 16 14 7.1589 0.2894 2.9785 17 1 5.6899 0.4101 3.1597 18 1 7.8537 1.0092 4.0758 19 1 7.5470 0.8826 1.6737 20 6 5.8632 -0.9704 0.8244 21 7 2.2891 -1.1328 -0.0002 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.9282 2.1193 -0.0004 26 1 4.4212 1.2963 -0.0047 27 1 4.4367 -2.2669 -2.0325 28 1 5.5159 -0.8616 -1.8641 29 1 6.1771 -3.7114 -0.9922 30 1 6.7808 -2.9183 -2.4673 31 1 8.4133 -2.8167 -0.5495 32 1 7.9197 -1.2077 -1.1326 33 1 7.8421 -1.6039 4.9871 34 1 6.0583 0.0326 0.4452 35 1 5.5593 -0.9153 1.8698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932135502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:40 Heat of formation + Delta-G solvation = 99.046656 kcal Electronic energy + Delta-G solvation = -16943.611948 eV Core-core repulsion = 14365.027295 eV Total energy + Delta-G solvation = -2578.584654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98223 -37.77177 -33.83541 -32.68936 -30.77133 -30.36593 -29.81160 -26.13872 -25.16029 -22.99582 -22.08255 -20.93225 -19.55255 -18.88582 -16.89434 -16.57869 -15.30833 -15.24401 -14.30320 -14.16406 -13.68952 -13.57078 -13.28605 -13.14237 -12.69013 -12.46900 -12.41119 -12.08118 -11.79317 -11.43097 -10.86315 -10.61133 -10.48023 -10.29699 -9.97911 -9.84322 -9.70042 -9.39367 -8.93430 -8.53695 -8.31341 -6.89755 -5.88891 -3.24139 2.07847 2.67597 3.08769 3.41033 3.53664 3.57056 4.54347 4.60721 4.90559 4.94454 5.06096 5.26677 5.31667 5.36606 5.49024 5.61422 5.66248 5.83132 5.97733 6.05855 6.14631 6.24830 6.26782 6.41792 6.46926 6.65471 6.74005 6.79581 6.81355 6.94509 7.08078 7.18602 7.99378 8.03369 8.39623 9.00903 9.78925 10.17286 11.27060 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.008937 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.027498 B = 3132.134275 C = 3823.478694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.387 5.387 3 C 0.045 3.955 4 C -0.264 4.264 5 C 0.097 3.903 6 C -0.028 4.028 7 H 0.086 0.914 8 C -0.095 4.095 9 C -0.135 4.135 10 C 0.146 3.854 11 N -0.605 5.605 12 C -0.259 4.259 13 H 0.086 0.914 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.878 3.122 17 H -0.286 1.286 18 H -0.304 1.304 19 H -0.269 1.269 20 C 0.141 3.859 21 N -0.300 5.300 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.030 0.970 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 6.094 -10.793 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.169 5.169 3 C -0.100 4.100 4 C -0.293 4.293 5 C -0.070 4.070 6 C -0.050 4.050 7 H 0.104 0.896 8 C -0.134 4.134 9 C -0.174 4.174 10 C 0.021 3.979 11 N -0.328 5.328 12 C -0.387 4.387 13 H 0.104 0.896 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.709 3.291 17 H -0.214 1.214 18 H -0.232 1.232 19 H -0.194 1.194 20 C 0.014 3.986 21 N -0.122 5.122 22 H 0.088 0.912 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.187 0.813 26 H 0.163 0.837 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.062 5.111 -10.599 17.581 hybrid contribution 0.024 1.903 0.195 1.913 sum -13.039 7.014 -10.404 18.095 Atomic orbital electron populations 1.21741 0.74874 1.04136 1.02824 1.48476 1.06276 1.04027 1.58160 1.22439 0.91285 0.93208 1.03087 1.21472 0.96849 0.94972 1.16034 1.22514 0.93054 0.94110 0.97286 1.20247 0.89434 0.97762 0.97586 0.89596 1.21368 0.97402 0.99709 0.94901 1.22022 0.96705 0.99303 0.99406 1.20961 0.94368 0.97139 0.85459 1.44339 1.24698 1.61643 1.02099 1.18926 1.27604 1.05375 0.86785 0.89635 1.25271 0.99023 0.97902 0.95323 1.69838 1.52377 1.35809 0.97137 0.86989 0.77264 0.87860 0.77025 1.21358 1.23248 1.19362 1.21323 0.85520 0.93054 0.98674 1.77335 1.01486 1.07443 1.25927 0.91226 0.89548 0.89896 0.81291 0.83669 0.93012 0.92356 0.91853 0.92532 0.91890 0.95905 0.92840 0.95211 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 11.47 59.85 0.69 1.64 16 2 N -0.39 -5.62 4.01 -68.16 -0.27 -5.89 16 3 C 0.05 0.62 11.49 -17.22 -0.20 0.42 16 4 C -0.26 -4.43 9.95 -40.01 -0.40 -4.83 16 5 C 0.10 1.84 6.13 -82.40 -0.51 1.33 16 6 C -0.03 -0.55 2.80 -91.65 -0.26 -0.81 16 7 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 8 C -0.10 -1.63 5.15 -26.69 -0.14 -1.77 16 9 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 10 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 11 N -0.60 -14.77 2.77 -172.32 -0.48 -15.24 16 12 C -0.26 -7.39 10.03 -15.06 -0.15 -7.54 16 13 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 14 C 0.02 0.70 5.23 -17.44 -0.09 0.61 16 15 N -0.91 -28.44 13.97 55.49 0.78 -27.66 16 16 Si 0.88 22.90 24.35 -169.99 -4.14 18.76 16 17 H -0.29 -7.33 6.62 56.52 0.37 -6.96 16 18 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 19 H -0.27 -6.79 6.63 56.52 0.38 -6.42 16 20 C 0.14 3.21 3.18 -3.71 -0.01 3.20 16 21 N -0.30 -5.53 12.58 33.67 0.42 -5.10 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.15 2.33 7.30 -52.49 -0.38 1.94 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 34 H 0.03 0.67 5.98 -51.93 -0.31 0.36 16 35 H 0.07 1.86 4.50 -51.93 -0.23 1.62 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -33.80 279.48 -5.91 -39.71 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.18 Total: -1.50 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.25 Total: -7.28 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.45 Total: -53.91 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.80 -5.91 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932135502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.754 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds