Wall clock time and date at job start Sun Mar 29 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03801 * 2 1 4 4 C 1.35323 * 107.74649 * 180.02562 * 3 2 1 5 5 C 1.39871 * 107.91775 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.89717 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.49844 * 154.93503 * 6 5 4 8 8 C 1.53043 * 109.49744 * 275.00015 * 6 5 4 9 9 C 1.53033 * 109.54073 * 181.31461 * 8 6 5 10 10 C 1.53195 * 109.31317 * 298.63402 * 9 8 6 11 11 N 1.46927 * 108.77358 * 54.63732 * 10 9 8 12 12 C 1.36934 * 120.63532 * 126.41798 * 11 10 9 13 13 H 1.08010 * 119.99399 * 332.60660 * 12 11 10 14 14 C 1.38802 * 120.00663 * 152.61021 * 12 11 10 15 15 N 1.31615 * 120.00562 * 159.34802 * 14 12 11 16 16 Si 1.86805 * 119.99858 * 339.34553 * 14 12 11 17 17 H 1.48501 * 109.46963 * 92.92740 * 16 14 12 18 18 H 1.48495 * 109.47338 * 212.92543 * 16 14 12 19 19 H 1.48499 * 109.47145 * 332.93059 * 16 14 12 20 20 C 1.46926 * 118.73416 * 306.38553 * 11 10 9 21 21 N 1.30838 * 108.20324 * 0.02562 * 5 4 3 22 22 H 1.09002 * 109.46761 * 90.00215 * 1 2 3 23 23 H 1.08996 * 109.47184 * 210.00475 * 1 2 3 24 24 H 1.08993 * 109.47162 * 330.00698 * 1 2 3 25 25 H 1.07998 * 126.12798 * 359.97438 * 3 2 1 26 26 H 1.08001 * 126.03840 * 179.73660 * 4 3 2 27 27 H 1.09006 * 109.45535 * 301.33705 * 8 6 5 28 28 H 1.09004 * 109.45796 * 61.30637 * 8 6 5 29 29 H 1.09005 * 109.49529 * 58.58428 * 9 8 6 30 30 H 1.08993 * 109.50065 * 178.64631 * 9 8 6 31 31 H 1.08997 * 109.58648 * 174.41923 * 10 9 8 32 32 H 1.08995 * 109.58621 * 294.70509 * 10 9 8 33 33 H 0.96998 * 120.00390 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.59214 * 293.82225 * 20 11 10 35 35 H 1.09004 * 109.58681 * 173.40132 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5438 0.6665 -0.0006 5 6 3.5347 -0.7322 -0.0003 6 6 4.7496 -1.6237 -0.0003 7 1 4.4924 -2.5892 0.4352 8 6 5.2358 -1.8248 -1.4374 9 6 6.4499 -2.7564 -1.4415 10 6 7.5826 -2.1160 -0.6331 11 7 7.0793 -1.7866 0.7074 12 6 7.7315 -2.2312 1.8263 13 1 8.3138 -3.1401 1.7866 14 6 7.6442 -1.5142 3.0116 15 7 7.9035 -2.1049 4.1588 16 14 7.1589 0.2894 2.9785 17 1 5.6899 0.4101 3.1597 18 1 7.8537 1.0092 4.0758 19 1 7.5470 0.8826 1.6737 20 6 5.8632 -0.9704 0.8244 21 7 2.2891 -1.1328 -0.0002 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5137 25 1 1.9282 2.1193 -0.0004 26 1 4.4212 1.2963 -0.0047 27 1 4.4367 -2.2669 -2.0325 28 1 5.5159 -0.8616 -1.8641 29 1 6.1771 -3.7114 -0.9922 30 1 6.7808 -2.9183 -2.4673 31 1 8.4133 -2.8167 -0.5495 32 1 7.9197 -1.2077 -1.1326 33 1 7.8421 -1.6039 4.9871 34 1 6.0583 0.0326 0.4452 35 1 5.5593 -0.9153 1.8698 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932135502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:39 Heat of formation + Delta-G solvation = 75.765399 kcal Electronic energy + Delta-G solvation = -16944.621499 eV Core-core repulsion = 14365.027295 eV Total energy + Delta-G solvation = -2579.594205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17069 -39.41462 -35.42678 -34.28029 -32.63513 -31.81216 -31.02422 -27.21262 -27.10709 -24.55554 -23.80670 -22.07696 -21.06167 -20.33289 -18.71211 -17.93435 -17.15647 -16.32866 -15.94515 -15.62930 -15.38852 -15.02767 -14.65490 -14.61936 -14.19452 -13.88571 -13.61592 -13.41741 -13.26756 -13.15946 -12.57261 -12.30126 -12.23529 -11.75065 -11.69507 -11.48054 -11.37363 -11.31570 -10.69111 -10.15232 -9.47610 -8.91545 -8.16718 -5.48015 0.95108 1.32377 1.39386 1.49889 1.70132 1.81650 2.42875 3.02384 3.33374 3.61192 3.89361 4.01418 4.11100 4.13049 4.31975 4.42520 4.45435 4.49891 4.68100 4.68585 4.74146 4.85794 4.88157 4.97318 5.05775 5.09711 5.18499 5.25421 5.30807 5.57014 5.66116 5.87813 6.13399 6.21391 6.77181 6.92173 7.63015 8.04303 9.03056 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024816 B = 0.008937 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.027498 B = 3132.134275 C = 3823.478694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.069 3.931 4 C -0.298 4.298 5 C 0.074 3.926 6 C -0.020 4.020 7 H 0.057 0.943 8 C -0.087 4.087 9 C -0.126 4.126 10 C 0.139 3.861 11 N -0.620 5.620 12 C -0.248 4.248 13 H 0.054 0.946 14 C -0.036 4.036 15 N -0.957 5.957 16 Si 0.943 3.057 17 H -0.282 1.282 18 H -0.309 1.309 19 H -0.253 1.253 20 C 0.145 3.855 21 N -0.339 5.339 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.119 0.881 25 H 0.221 0.779 26 H 0.148 0.852 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 8.433 -13.024 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.078 4.078 4 C -0.327 4.327 5 C -0.092 4.092 6 C -0.043 4.043 7 H 0.075 0.925 8 C -0.125 4.125 9 C -0.164 4.164 10 C 0.015 3.985 11 N -0.344 5.344 12 C -0.378 4.378 13 H 0.072 0.928 14 C -0.231 4.231 15 N -0.603 5.603 16 Si 0.772 3.228 17 H -0.209 1.209 18 H -0.237 1.237 19 H -0.177 1.177 20 C 0.019 3.981 21 N -0.162 5.162 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.137 0.863 25 H 0.237 0.763 26 H 0.165 0.835 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.084 7.442 -12.888 21.190 hybrid contribution 0.536 1.117 0.838 1.496 sum -14.548 8.559 -12.049 20.739 Atomic orbital electron populations 1.22199 0.71801 1.05819 1.04723 1.48906 1.07982 1.03271 1.56366 1.23129 0.90054 0.94923 0.99693 1.21654 0.98612 0.94039 1.18403 1.22340 0.92830 0.95007 0.98976 1.19969 0.89429 0.96297 0.98583 0.92457 1.21329 0.97601 1.00435 0.93171 1.21936 0.95533 0.98178 1.00790 1.21198 0.95494 0.98064 0.83755 1.44494 1.25412 1.61905 1.02602 1.18895 1.26464 1.04085 0.88327 0.92793 1.25911 1.00294 1.01891 0.94974 1.69969 1.55285 1.37296 0.97789 0.85937 0.76952 0.82566 0.77335 1.20933 1.23740 1.17656 1.21225 0.85810 0.93595 0.97426 1.77223 1.01840 1.09853 1.27287 0.89176 0.89882 0.86281 0.76297 0.83463 0.91624 0.91028 0.93284 0.88656 0.92368 0.94009 0.93031 0.93991 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.47 127.77 1.47 2.80 16 2 N -0.38 -9.92 4.01 -369.57 -1.48 -11.41 16 3 C 0.07 1.61 11.49 83.54 0.96 2.58 16 4 C -0.30 -9.29 9.95 21.99 0.22 -9.07 16 5 C 0.07 2.72 6.13 43.10 0.26 2.98 16 6 C -0.02 -0.81 2.80 -11.46 -0.03 -0.84 16 7 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 8 C -0.09 -2.80 5.15 30.62 0.16 -2.64 16 9 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 10 C 0.14 5.43 6.52 86.36 0.56 5.99 16 11 N -0.62 -30.41 2.77 -699.10 -1.94 -32.34 16 12 C -0.25 -14.61 10.03 84.03 0.84 -13.77 16 13 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 14 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 15 N -0.96 -62.24 13.97 21.65 0.30 -61.93 16 16 Si 0.94 48.34 24.35 68.60 1.67 50.01 16 17 H -0.28 -14.14 6.62 99.48 0.66 -13.48 16 18 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 19 H -0.25 -12.11 6.63 99.48 0.66 -11.45 16 20 C 0.15 6.59 3.18 86.36 0.27 6.87 16 21 N -0.34 -12.06 12.58 -47.38 -0.60 -12.66 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.22 2.72 8.06 -2.91 -0.02 2.70 16 26 H 0.15 4.37 7.30 -2.91 -0.02 4.35 16 27 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 28 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 34 H 0.04 1.81 5.98 -2.39 -0.01 1.80 16 35 H 0.04 2.06 4.50 -2.39 -0.01 2.05 16 Total: -1.00 -76.37 279.48 4.27 -72.10 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.97 Total: 6.93 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.35 Total: -10.70 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.71 Total: -118.34 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.67 Total: 50.01 kcal Total: -76.37 4.27 -72.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932135502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.867 kcal (2) G-P(sol) polarization free energy of solvation -76.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds