Wall clock time and date at job start Sun Mar 29 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03368 * 2 1 4 4 C 1.30846 * 108.20182 * 179.97438 * 3 2 1 5 5 C 1.39875 * 108.19993 * 359.77759 * 4 3 2 6 6 C 1.34941 * 126.03626 * 179.97438 * 2 1 3 7 7 C 1.50708 * 126.13026 * 359.97438 * 6 2 1 8 8 H 1.09000 * 109.87362 * 355.51785 * 7 6 2 9 9 C 1.54317 * 109.88669 * 234.48596 * 7 6 2 10 10 C 1.55401 * 102.89643 * 218.40299 * 9 7 6 11 11 C 1.54903 * 101.73942 * 35.48358 * 10 9 7 12 12 N 1.47441 * 109.88743 * 116.54744 * 7 6 2 13 13 C 1.46894 * 111.00365 * 356.14835 * 12 7 6 14 14 C 1.50699 * 109.47489 * 195.23708 * 13 12 7 15 15 H 1.08003 * 119.99536 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00421 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00191 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47424 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47047 * 120.00060 * 18 16 14 21 21 H 1.48499 * 109.47379 * 240.00098 * 18 16 14 22 22 H 1.08993 * 109.47278 * 270.02640 * 1 2 3 23 23 H 1.09000 * 109.46707 * 30.03183 * 1 2 3 24 24 H 1.09005 * 109.46710 * 150.02668 * 1 2 3 25 25 H 1.08000 * 125.89667 * 180.02562 * 4 3 2 26 26 H 1.08003 * 126.03657 * 180.23778 * 5 4 3 27 27 H 1.08998 * 110.70820 * 336.68890 * 9 7 6 28 28 H 1.09005 * 110.70898 * 99.92783 * 9 7 6 29 29 H 1.08992 * 110.87303 * 277.39379 * 10 9 7 30 30 H 1.09002 * 111.05326 * 153.64932 * 10 9 7 31 31 H 1.09007 * 110.37422 * 204.18542 * 11 10 9 32 32 H 1.09003 * 110.37303 * 81.84791 * 11 10 9 33 33 H 1.08998 * 109.47231 * 315.24000 * 13 12 7 34 34 H 1.09006 * 109.47244 * 75.23756 * 13 12 7 35 35 H 0.97004 * 119.99773 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5259 0.0017 8 1 0.7111 -2.5656 0.0822 9 6 2.4395 -3.2829 1.1832 10 6 2.7475 -4.6791 0.5742 11 6 3.1336 -4.3105 -0.8799 12 7 2.2332 -3.1940 -1.2383 13 6 2.9023 -2.2465 -2.1397 14 6 2.9973 -2.8467 -3.5187 15 1 2.6007 -3.8335 -3.7067 16 6 3.5915 -2.1365 -4.5402 17 7 4.0749 -0.9350 -4.3112 18 14 3.7086 -2.8801 -6.2498 19 1 3.0930 -4.2315 -6.2450 20 1 2.9896 -2.0127 -7.2172 21 1 5.1356 -2.9871 -6.6464 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8897 -0.5143 24 1 -0.3633 -0.8903 -0.5135 25 1 4.4054 1.3711 0.0011 26 1 4.4211 -1.2963 0.0115 27 1 3.3583 -2.7910 1.5024 28 1 1.7382 -3.3680 2.0133 29 1 1.8626 -5.3151 0.5940 30 1 3.5805 -5.1563 1.0904 31 1 2.9681 -5.1594 -1.5433 32 1 4.1741 -3.9888 -0.9263 33 1 2.3284 -1.3210 -2.1849 34 1 3.9041 -2.0349 -1.7657 35 1 4.4933 -0.4354 -5.0298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932272782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:36 Heat of formation + Delta-G solvation = 67.634858 kcal Electronic energy + Delta-G solvation = -17281.967996 eV Core-core repulsion = 14702.021224 eV Total energy + Delta-G solvation = -2579.946771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.42047 -39.52978 -35.13120 -34.16725 -32.65864 -32.00813 -28.64899 -28.19981 -27.54031 -24.57980 -22.71921 -22.12477 -21.70309 -19.97034 -18.64236 -17.72236 -16.72882 -16.49726 -16.12282 -15.92502 -15.30460 -14.95115 -14.57572 -14.44479 -13.79686 -13.54377 -13.41261 -13.22644 -13.06904 -13.00829 -12.69822 -12.43499 -12.23682 -11.90473 -11.78736 -11.57234 -11.47914 -11.23414 -10.59209 -10.15224 -9.26372 -9.03699 -8.16743 -6.27801 0.94970 1.37803 1.38427 1.51822 1.73185 1.94550 2.39620 3.14156 3.39046 3.59723 3.70250 3.87884 3.94132 4.21204 4.35358 4.39888 4.42272 4.63080 4.68502 4.74106 4.86652 4.92609 4.98873 5.06593 5.14191 5.24798 5.29570 5.39915 5.44264 5.66467 5.76921 6.08351 6.16425 6.33243 6.57968 6.79501 6.89999 7.41498 8.92255 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.009849 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.189791 B = 2842.129428 C = 3598.235239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.377 5.377 3 N -0.333 5.333 4 C 0.040 3.960 5 C -0.276 4.276 6 C 0.088 3.912 7 C 0.124 3.876 8 H 0.098 0.902 9 C -0.121 4.121 10 C -0.114 4.114 11 C 0.047 3.953 12 N -0.526 5.526 13 C 0.218 3.782 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.003 3.997 17 N -0.928 5.928 18 Si 0.963 3.037 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.278 1.278 22 H 0.101 0.899 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.197 0.803 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.023 0.977 33 H -0.006 1.006 34 H -0.016 1.016 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -4.032 11.879 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.160 5.160 3 N -0.155 5.155 4 C -0.145 4.145 5 C -0.305 4.305 6 C -0.041 4.041 7 C 0.014 3.986 8 H 0.116 0.884 9 C -0.159 4.159 10 C -0.151 4.151 11 C -0.081 4.081 12 N -0.250 5.250 13 C 0.091 3.909 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.204 1.204 22 H 0.119 0.881 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.214 0.786 26 H 0.148 0.852 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.012 0.988 34 H 0.001 0.999 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.105 -3.059 11.517 13.389 hybrid contribution 1.661 -0.056 -1.047 1.964 sum -4.444 -3.115 10.469 11.792 Atomic orbital electron populations 1.22105 0.72835 1.05021 1.04769 1.48676 1.07557 1.02922 1.56860 1.77132 1.02288 1.09128 1.26995 1.24042 0.95648 0.95363 0.99404 1.21148 0.96508 0.95130 1.17757 1.21610 0.91479 0.91431 0.99608 1.21416 1.00748 0.84656 0.91745 0.88402 1.22879 1.01285 0.95328 0.96456 1.22752 1.02907 0.96410 0.93079 1.22991 0.94006 0.94001 0.97100 1.63974 1.39890 1.10158 1.11025 1.19591 0.90924 0.89747 0.90602 1.21606 1.37072 1.02623 0.95353 0.92397 1.25868 0.95206 0.95264 1.03195 1.70142 1.40218 1.12647 1.33801 0.85428 0.77835 0.78755 0.79169 1.18637 1.20792 1.20353 0.88050 0.89303 0.88859 0.78586 0.85197 0.91512 0.87887 0.89184 0.88809 0.91152 0.95829 0.98850 0.99870 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.48 11.11 127.77 1.42 3.90 16 2 N -0.38 -14.14 4.01 -356.02 -1.43 -15.57 16 3 N -0.33 -13.65 12.58 -57.02 -0.72 -14.37 16 4 C 0.04 1.58 12.03 85.24 1.03 2.60 16 5 C -0.28 -11.35 7.55 21.99 0.17 -11.19 16 6 C 0.09 3.42 3.80 41.41 0.16 3.58 16 7 C 0.12 4.24 3.71 44.51 0.17 4.41 16 8 H 0.10 2.96 6.85 -2.39 -0.02 2.95 16 9 C -0.12 -3.13 6.45 31.87 0.21 -2.93 16 10 C -0.11 -2.83 7.08 32.07 0.23 -2.60 16 11 C 0.05 1.70 6.34 86.77 0.55 2.25 16 12 N -0.53 -22.29 5.11 -869.43 -4.45 -26.74 16 13 C 0.22 11.64 3.21 85.56 0.27 11.91 16 14 C -0.53 -30.64 8.96 25.60 0.23 -30.41 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 18 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.09 2.35 7.13 -2.38 -0.02 2.33 16 25 H 0.20 6.52 8.06 -2.91 -0.02 6.50 16 26 H 0.13 5.40 7.45 -2.91 -0.02 5.38 16 27 H 0.07 1.84 7.21 -2.39 -0.02 1.83 16 28 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.02 0.94 7.54 -2.39 -0.02 0.93 16 33 H -0.01 -0.39 6.58 -2.39 -0.02 -0.41 16 34 H -0.02 -0.94 5.63 -2.38 -0.01 -0.96 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -72.48 282.97 1.67 -70.81 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.07 Total: 13.43 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.88 Total: -17.84 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -6.31 Total: -113.84 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.48 1.67 -70.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932272782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.443 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds