Wall clock time and date at job start Sun Mar 29 2020 22:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00265 * 2 1 4 4 H 1.48495 * 109.47215 * 240.00404 * 3 2 1 5 5 H 1.48499 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47198 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00640 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00306 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.47898 * 110.99884 * 75.62957 * 10 9 7 12 12 C 1.53990 * 107.05790 * 145.84703 * 11 10 9 13 13 H 1.09004 * 110.31365 * 239.85789 * 12 11 10 14 14 C 1.53004 * 110.39803 * 117.73003 * 12 11 10 15 15 C 1.53001 * 117.49873 * 132.85156 * 14 12 11 16 16 C 1.52993 * 60.00136 * 252.51623 * 15 14 12 17 17 C 1.54597 * 105.14258 * 358.77397 * 12 11 10 18 18 C 1.48532 * 110.99976 * 193.02666 * 10 9 7 19 19 H 1.09004 * 110.67001 * 318.71107 * 18 10 9 20 20 C 1.53000 * 110.67143 * 81.84478 * 18 10 9 21 21 C 1.53000 * 117.49890 * 242.58771 * 20 18 10 22 22 C 1.52991 * 117.50090 * 173.92829 * 20 18 10 23 23 H 0.96995 * 119.99799 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47240 * 59.99569 * 9 7 2 25 25 H 1.09001 * 109.46865 * 300.00134 * 9 7 2 26 26 H 1.08998 * 109.92032 * 26.49424 * 11 10 9 27 27 H 1.09002 * 109.91571 * 265.19222 * 11 10 9 28 28 H 1.09001 * 115.55123 * 278.56823 * 14 12 11 29 29 H 1.08996 * 117.50042 * 0.02562 * 15 14 12 30 30 H 1.09003 * 117.49250 * 145.02387 * 15 14 12 31 31 H 1.09005 * 117.50401 * 252.51220 * 16 15 14 32 32 H 1.09000 * 117.50013 * 107.48973 * 16 15 14 33 33 H 1.08997 * 110.72715 * 96.39716 * 17 12 11 34 34 H 1.09000 * 110.72906 * 219.68881 * 17 12 11 35 35 H 1.09006 * 115.54669 * 28.25296 * 20 18 10 36 36 H 1.08999 * 117.49854 * 0.02562 * 21 20 18 37 37 H 1.09003 * 117.49995 * 145.01373 * 21 20 18 38 38 H 1.09004 * 117.49537 * 214.97442 * 22 20 18 39 39 H 1.09001 * 117.50068 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.8104 -3.7959 1.3370 12 6 3.0433 -5.3061 1.5278 13 1 2.4902 -5.6678 2.3946 14 6 4.5361 -5.5990 1.6916 15 6 4.9531 -6.5232 2.8374 16 6 5.2381 -5.0225 2.9228 17 6 2.5063 -5.9639 0.2359 18 6 1.5246 -4.8982 -0.3131 19 1 0.5646 -4.9591 0.1997 20 6 1.3426 -5.0590 -1.8237 21 6 -0.0888 -5.1344 -2.3588 22 6 0.7853 -6.3906 -2.3304 23 1 -0.4849 0.8400 0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.1313 -3.4251 2.1047 27 1 3.7606 -3.2643 1.3895 28 1 5.1087 -5.6547 0.7658 29 1 4.1640 -6.9229 3.4743 30 1 5.8002 -7.1873 2.6654 31 1 6.2726 -4.6991 2.8070 32 1 4.6365 -4.4345 3.6159 33 1 3.3161 -6.1429 -0.4713 34 1 1.9806 -6.8910 0.4647 35 1 2.0856 -4.5561 -2.4428 36 1 -0.9008 -5.0690 -1.6347 37 1 -0.2875 -4.6814 -3.3301 38 1 1.1612 -6.7637 -3.2831 39 1 0.5486 -7.1525 -1.5876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932898389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:25 Heat of formation + Delta-G solvation = 44.436734 kcal Electronic energy + Delta-G solvation = -16962.959283 eV Core-core repulsion = 14485.546909 eV Total energy + Delta-G solvation = -2477.412374 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.17677 -37.06437 -35.44051 -32.89481 -30.72078 -28.19073 -26.33592 -23.05621 -22.52855 -22.09550 -21.78061 -20.87724 -19.52147 -18.91834 -16.17730 -15.83791 -15.26206 -15.03829 -14.56246 -14.03538 -13.82059 -12.90578 -12.89506 -12.19846 -12.02149 -11.80410 -11.60958 -11.45358 -11.22720 -11.13872 -10.97492 -10.75670 -10.65176 -10.42105 -10.14778 -10.07563 -9.87555 -9.77358 -9.52883 -9.34320 -9.08670 -8.36192 -7.28008 -5.97079 -3.97798 3.36564 3.40108 3.43546 3.95228 4.19158 4.46943 4.73205 4.87705 5.02616 5.07753 5.24521 5.29472 5.37101 5.42675 5.48242 5.60918 5.71581 5.77032 5.80235 5.88686 5.90986 6.01786 6.06004 6.16957 6.23122 6.29065 6.32223 6.44716 6.45887 6.58504 6.67094 6.76659 6.80836 7.30435 7.37087 7.86908 8.11603 8.26302 8.59436 9.10256 9.66048 11.13759 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008458 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.942397 B = 3309.698957 C = 4708.890577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.186 3.814 10 N -0.506 5.506 11 C 0.058 3.942 12 C -0.073 4.073 13 H 0.066 0.934 14 C -0.130 4.130 15 C -0.187 4.187 16 C -0.180 4.180 17 C -0.103 4.103 18 C 0.091 3.909 19 H 0.041 0.959 20 C -0.118 4.118 21 C -0.181 4.181 22 C -0.186 4.186 23 H 0.261 0.739 24 H 0.032 0.968 25 H -0.010 1.010 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -13.071 1.477 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.061 3.939 10 N -0.231 5.231 11 C -0.071 4.071 12 C -0.093 4.093 13 H 0.084 0.916 14 C -0.148 4.148 15 C -0.224 4.224 16 C -0.217 4.217 17 C -0.141 4.141 18 C -0.018 4.018 19 H 0.059 0.941 20 C -0.137 4.137 21 C -0.218 4.218 22 C -0.223 4.223 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.008 0.992 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.371 -12.790 1.095 13.915 hybrid contribution -0.309 0.896 0.639 1.143 sum 5.062 -11.894 1.734 13.042 Atomic orbital electron populations 1.69951 1.06022 1.26722 1.51347 1.24981 0.94841 0.99208 0.95632 0.86587 0.79451 0.82905 0.78617 1.20206 1.21416 1.20349 1.21124 0.93487 0.89948 1.49567 0.92049 1.19881 0.90104 0.87778 0.96154 1.64759 1.31345 1.02262 1.24708 1.22718 1.00225 0.92835 0.91278 1.21693 0.92867 0.96840 0.97852 0.91583 1.22336 0.95941 1.03347 0.93196 1.22994 1.03211 0.93196 1.03035 1.22912 1.01351 0.95742 1.01742 1.22473 0.98741 0.96810 0.96082 1.22229 0.95512 0.91407 0.92620 0.94069 1.22101 0.96695 0.98862 0.96047 1.22963 0.94783 1.01329 1.02721 1.22904 1.05582 0.91546 1.02294 0.92988 0.94966 0.99193 0.94415 0.90725 0.87770 0.89221 0.89359 0.89104 0.88791 0.90793 0.92246 0.87196 0.89206 0.89176 0.89363 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.50 -14.43 9.00 -34.44 -0.31 -14.74 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 4.95 4.53 -4.98 -0.02 4.92 16 10 N -0.51 -11.08 4.91 -224.06 -1.10 -12.18 16 11 C 0.06 1.13 5.86 -2.76 -0.02 1.12 16 12 C -0.07 -1.13 3.15 -89.26 -0.28 -1.41 16 13 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 14 C -0.13 -1.75 4.94 -90.62 -0.45 -2.20 16 15 C -0.19 -2.13 10.19 -26.73 -0.27 -2.40 16 16 C -0.18 -2.26 9.82 -26.73 -0.26 -2.52 16 17 C -0.10 -1.55 5.76 -24.87 -0.14 -1.70 16 18 C 0.09 1.67 2.47 -65.78 -0.16 1.50 16 19 H 0.04 0.80 7.84 -51.93 -0.41 0.39 16 20 C -0.12 -2.01 5.11 -90.62 -0.46 -2.47 16 21 C -0.18 -2.85 10.20 -26.70 -0.27 -3.12 16 22 C -0.19 -2.52 9.94 -26.70 -0.27 -2.79 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.91 7.74 -51.93 -0.40 0.51 16 25 H -0.01 -0.28 7.64 -51.93 -0.40 -0.67 16 26 H 0.04 0.80 7.47 -51.93 -0.39 0.41 16 27 H 0.07 1.50 7.47 -51.93 -0.39 1.12 16 28 H 0.10 1.41 7.87 -51.93 -0.41 1.01 16 29 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.09 7.59 -51.93 -0.39 0.70 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 36 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -29.65 314.49 -10.63 -40.27 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.96 Total: 0.91 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.02 Total: -24.33 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.36 Total: -38.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.65 -10.63 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.707 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds