Wall clock time and date at job start Sun Mar 29 2020 22:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00265 * 2 1 4 4 H 1.48495 * 109.47215 * 240.00404 * 3 2 1 5 5 H 1.48499 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47198 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00640 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00306 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.47898 * 110.99884 * 75.62957 * 10 9 7 12 12 C 1.53990 * 107.05790 * 145.84703 * 11 10 9 13 13 H 1.09004 * 110.31365 * 239.85789 * 12 11 10 14 14 C 1.53004 * 110.39803 * 117.73003 * 12 11 10 15 15 C 1.53001 * 117.49873 * 132.85156 * 14 12 11 16 16 C 1.52993 * 60.00136 * 252.51623 * 15 14 12 17 17 C 1.54597 * 105.14258 * 358.77397 * 12 11 10 18 18 C 1.48532 * 110.99976 * 193.02666 * 10 9 7 19 19 H 1.09004 * 110.67001 * 318.71107 * 18 10 9 20 20 C 1.53000 * 110.67143 * 81.84478 * 18 10 9 21 21 C 1.53000 * 117.49890 * 242.58771 * 20 18 10 22 22 C 1.52991 * 117.50090 * 173.92829 * 20 18 10 23 23 H 0.96995 * 119.99799 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47240 * 59.99569 * 9 7 2 25 25 H 1.09001 * 109.46865 * 300.00134 * 9 7 2 26 26 H 1.08998 * 109.92032 * 26.49424 * 11 10 9 27 27 H 1.09002 * 109.91571 * 265.19222 * 11 10 9 28 28 H 1.09001 * 115.55123 * 278.56823 * 14 12 11 29 29 H 1.08996 * 117.50042 * 0.02562 * 15 14 12 30 30 H 1.09003 * 117.49250 * 145.02387 * 15 14 12 31 31 H 1.09005 * 117.50401 * 252.51220 * 16 15 14 32 32 H 1.09000 * 117.50013 * 107.48973 * 16 15 14 33 33 H 1.08997 * 110.72715 * 96.39716 * 17 12 11 34 34 H 1.09000 * 110.72906 * 219.68881 * 17 12 11 35 35 H 1.09006 * 115.54669 * 28.25296 * 20 18 10 36 36 H 1.08999 * 117.49854 * 0.02562 * 21 20 18 37 37 H 1.09003 * 117.49995 * 145.01373 * 21 20 18 38 38 H 1.09004 * 117.49537 * 214.97442 * 22 20 18 39 39 H 1.09001 * 117.50068 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.8104 -3.7959 1.3370 12 6 3.0433 -5.3061 1.5278 13 1 2.4902 -5.6678 2.3946 14 6 4.5361 -5.5990 1.6916 15 6 4.9531 -6.5232 2.8374 16 6 5.2381 -5.0225 2.9228 17 6 2.5063 -5.9639 0.2359 18 6 1.5246 -4.8982 -0.3131 19 1 0.5646 -4.9591 0.1997 20 6 1.3426 -5.0590 -1.8237 21 6 -0.0888 -5.1344 -2.3588 22 6 0.7853 -6.3906 -2.3304 23 1 -0.4849 0.8400 0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.1313 -3.4251 2.1047 27 1 3.7606 -3.2643 1.3895 28 1 5.1087 -5.6547 0.7658 29 1 4.1640 -6.9229 3.4743 30 1 5.8002 -7.1873 2.6654 31 1 6.2726 -4.6991 2.8070 32 1 4.6365 -4.4345 3.6159 33 1 3.3161 -6.1429 -0.4713 34 1 1.9806 -6.8910 0.4647 35 1 2.0856 -4.5561 -2.4428 36 1 -0.9008 -5.0690 -1.6347 37 1 -0.2875 -4.6814 -3.3301 38 1 1.1612 -6.7637 -3.2831 39 1 0.5486 -7.1525 -1.5876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932898389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:24 Heat of formation + Delta-G solvation = 27.899727 kcal Electronic energy + Delta-G solvation = -16963.676382 eV Core-core repulsion = 14485.546909 eV Total energy + Delta-G solvation = -2478.129473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58970 -38.20250 -36.85538 -34.96641 -32.43534 -29.61877 -28.35863 -24.86006 -23.71027 -23.19610 -22.97230 -22.47221 -20.87177 -20.29040 -18.39556 -17.31479 -16.59701 -16.43369 -16.15863 -15.51131 -15.10161 -14.68552 -14.50827 -13.91052 -13.64177 -13.21772 -13.19412 -12.83034 -12.62424 -12.47057 -12.38153 -12.32776 -12.29342 -11.90885 -11.89599 -11.43452 -11.41595 -11.11574 -11.00842 -10.73185 -10.60755 -10.51954 -9.11128 -8.21311 -6.31846 1.37687 1.41459 1.49445 2.38610 2.89649 2.97243 3.10368 3.31908 3.70106 3.83318 3.88895 4.04036 4.11397 4.20044 4.23300 4.33713 4.45459 4.53714 4.59871 4.65625 4.79672 4.83525 4.85085 4.96825 5.04482 5.06147 5.08467 5.11158 5.21845 5.28440 5.29490 5.33085 5.36780 5.42165 5.49029 5.66193 6.06018 6.33101 6.58631 6.84191 7.37926 8.89453 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008458 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.942397 B = 3309.698957 C = 4708.890577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.207 3.793 10 N -0.517 5.517 11 C 0.058 3.942 12 C -0.063 4.063 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.161 4.161 16 C -0.190 4.190 17 C -0.090 4.090 18 C 0.088 3.912 19 H 0.024 0.976 20 C -0.145 4.145 21 C -0.198 4.198 22 C -0.142 4.142 23 H 0.264 0.736 24 H 0.004 0.996 25 H -0.044 1.044 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -14.770 1.471 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.081 3.919 10 N -0.241 5.241 11 C -0.070 4.070 12 C -0.082 4.082 13 H 0.094 0.906 14 C -0.164 4.164 15 C -0.198 4.198 16 C -0.227 4.227 17 C -0.128 4.128 18 C -0.021 4.021 19 H 0.042 0.958 20 C -0.164 4.164 21 C -0.235 4.235 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.022 0.978 25 H -0.026 1.026 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.954 -14.513 1.089 16.130 hybrid contribution -0.838 1.421 0.645 1.771 sum 6.116 -13.092 1.734 14.554 Atomic orbital electron populations 1.70084 1.07713 1.27909 1.51837 1.25923 0.95765 1.03177 0.94800 0.85454 0.78220 0.77948 0.79119 1.19278 1.20566 1.19309 1.21429 0.93468 0.91295 1.49988 0.92392 1.19451 0.89993 0.89430 0.93063 1.64672 1.30416 1.02874 1.26102 1.22706 0.98625 0.96361 0.89355 1.21589 0.94908 0.93152 0.98530 0.90641 1.22233 0.94304 1.05775 0.94044 1.23071 1.03642 0.92435 1.00641 1.22971 1.01597 0.97153 1.00974 1.22452 0.98162 0.96580 0.95587 1.22344 0.95367 0.90604 0.93755 0.95785 1.22014 0.97014 1.02472 0.94870 1.23012 0.94041 1.03917 1.02522 1.23002 1.01583 0.89997 1.03317 0.92695 0.97806 1.02644 0.97057 0.91761 0.87676 0.88436 0.87285 0.88172 0.89811 0.89917 0.89303 0.88928 0.90246 0.88986 0.86954 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.52 -31.24 9.00 25.60 0.23 -31.01 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.21 11.69 4.53 85.56 0.39 12.08 16 10 N -0.52 -23.58 4.91 -862.78 -4.23 -27.81 16 11 C 0.06 2.34 5.86 86.45 0.51 2.85 16 12 C -0.06 -1.87 3.15 -9.91 -0.03 -1.90 16 13 H 0.08 2.11 7.96 -2.39 -0.02 2.09 16 14 C -0.15 -3.61 4.94 -10.79 -0.05 -3.67 16 15 C -0.16 -3.12 10.19 30.59 0.31 -2.81 16 16 C -0.19 -4.43 9.82 30.59 0.30 -4.13 16 17 C -0.09 -2.54 5.76 31.80 0.18 -2.35 16 18 C 0.09 3.25 2.47 45.26 0.11 3.36 16 19 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 20 C -0.14 -4.92 5.11 -10.80 -0.06 -4.97 16 21 C -0.20 -6.26 10.20 30.62 0.31 -5.94 16 22 C -0.14 -3.49 9.94 30.61 0.30 -3.19 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.00 0.23 7.74 -2.39 -0.02 0.21 16 25 H -0.04 -2.72 7.64 -2.39 -0.02 -2.73 16 26 H 0.01 0.50 7.47 -2.39 -0.02 0.48 16 27 H 0.06 2.69 7.47 -2.39 -0.02 2.67 16 28 H 0.11 2.62 7.87 -2.39 -0.02 2.60 16 29 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 2.22 7.59 -2.39 -0.02 2.21 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 36 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 37 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.67 314.49 2.04 -64.64 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.99 Total: 14.38 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 2.97 Total: -41.15 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.95 Total: -85.71 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.67 2.04 -64.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932898389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.539 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds