Wall clock time and date at job start Sun Mar 29 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 N 1.46902 * 109.46815 * 179.71597 * 3 2 1 5 5 C 1.46905 * 111.00079 * 297.91518 * 4 3 2 6 6 C 1.50704 * 109.46923 * 293.08183 * 5 4 3 7 7 H 1.07996 * 119.99856 * 354.98588 * 6 5 4 8 8 C 1.37873 * 119.99927 * 174.97822 * 6 5 4 9 9 N 1.31515 * 120.00029 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00247 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47236 * 59.99680 * 10 8 6 12 12 H 1.48503 * 109.47469 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47025 * 300.00189 * 10 8 6 14 14 C 1.46897 * 111.00056 * 61.86942 * 4 3 2 15 15 C 1.50697 * 109.47083 * 66.04472 * 14 4 3 16 16 C 1.38614 * 120.07955 * 95.26002 * 15 14 4 17 17 C 1.38869 * 117.97144 * 180.28465 * 16 15 14 18 18 C 1.38617 * 117.96922 * 359.46537 * 17 16 15 19 19 N 1.31928 * 119.84438 * 0.27700 * 18 17 16 20 20 N 1.28353 * 122.18437 * 359.97438 * 19 18 17 21 21 H 1.08992 * 109.47410 * 59.99639 * 1 2 3 22 22 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46821 * 299.99139 * 1 2 3 24 24 H 1.09006 * 109.46843 * 240.00574 * 2 1 3 25 25 H 1.08992 * 109.47410 * 120.00361 * 2 1 3 26 26 H 1.08998 * 109.46735 * 59.72406 * 3 2 1 27 27 H 1.08996 * 109.47324 * 299.71871 * 3 2 1 28 28 H 1.08994 * 109.47300 * 53.08481 * 5 4 3 29 29 H 1.08997 * 109.47038 * 173.08635 * 5 4 3 30 30 H 0.96999 * 120.00062 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.47316 * 306.04274 * 14 4 3 32 32 H 1.09000 * 109.47440 * 186.04414 * 14 4 3 33 33 H 1.08000 * 121.01378 * 0.02889 * 16 15 14 34 34 H 1.08003 * 121.02244 * 179.73829 * 17 16 15 35 35 H 1.07998 * 120.07834 * 180.29668 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0069 5 6 4.0297 0.8025 1.2223 6 6 3.6841 1.6465 2.4220 7 1 3.2046 2.6048 2.2879 8 6 3.9799 1.1951 3.6907 9 7 4.5641 0.0282 3.8539 10 14 3.5508 2.2408 5.1779 11 1 2.0847 2.4739 5.2127 12 1 3.9702 1.5364 6.4161 13 1 4.2571 3.5439 5.0870 14 6 4.0410 0.7940 -1.1990 15 6 3.6881 1.6184 -2.4101 16 6 4.5953 2.5380 -2.9128 17 6 4.2224 3.2786 -4.0268 18 6 2.9705 3.0443 -4.5739 19 7 2.1745 2.1436 -4.0303 20 7 2.5172 1.4626 -2.9976 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6725 1.9577 0.8875 27 1 1.6807 1.9549 -0.8924 28 1 3.5832 -0.1857 1.3324 29 1 5.1127 0.7054 1.1462 30 1 4.7718 -0.2896 4.7465 31 1 3.6072 -0.2011 -1.2979 32 1 5.1249 0.7114 -1.1190 33 1 5.5610 2.6774 -2.4497 34 1 4.8891 4.0116 -4.4566 35 1 2.6476 3.5976 -5.4434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139970710.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:52 Heat of formation + Delta-G solvation = 35.730824 kcal Electronic energy + Delta-G solvation = -16599.585629 eV Core-core repulsion = 14018.255394 eV Total energy + Delta-G solvation = -2581.330234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93081 -39.09244 -34.93755 -34.45545 -33.85750 -32.94955 -29.45438 -27.96095 -26.07969 -25.39217 -23.89602 -23.56228 -20.98838 -18.41767 -18.28437 -17.68103 -17.01098 -16.71701 -16.25051 -15.97090 -15.58834 -15.00126 -14.77906 -14.21238 -14.11801 -13.87131 -13.32248 -12.94325 -12.75248 -12.70131 -12.63054 -12.38922 -12.25872 -12.02326 -11.64449 -11.35426 -11.28730 -11.02961 -10.78364 -10.57868 -10.51658 -8.96339 -8.17574 -6.26309 -0.03296 0.04378 1.41770 1.43846 1.51765 2.40858 2.62427 3.07882 3.15340 3.51584 3.63246 3.80197 3.93418 4.12137 4.16844 4.19246 4.37273 4.48350 4.53112 4.60719 4.72224 4.91161 4.95348 5.03263 5.11332 5.16566 5.24894 5.32481 5.39116 5.42619 5.50772 5.68315 6.06956 6.29420 6.59025 6.88338 7.42399 7.83239 8.92655 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.006549 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.151489 B = 4274.538748 C = 4714.328710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.148 4.148 3 C 0.076 3.924 4 N -0.535 5.535 5 C 0.205 3.795 6 C -0.519 4.519 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.100 3.900 15 C 0.074 3.926 16 C -0.111 4.111 17 C -0.104 4.104 18 C 0.030 3.970 19 N -0.284 5.284 20 N -0.271 5.271 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.064 0.936 28 H -0.017 1.017 29 H 0.008 0.992 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.194 0.806 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 5.690 -14.799 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C -0.052 4.052 4 N -0.258 5.258 5 C 0.080 3.920 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.030 4.030 15 C -0.071 4.071 16 C -0.140 4.140 17 C -0.132 4.132 18 C -0.135 4.135 19 N -0.124 5.124 20 N -0.113 5.113 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.001 0.999 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.185 0.815 34 H 0.211 0.789 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.880 5.270 -14.701 15.730 hybrid contribution 1.042 0.007 1.125 1.534 sum -0.837 5.277 -13.576 14.590 Atomic orbital electron populations 1.21563 0.94283 1.01801 1.01531 1.21943 0.97649 0.98715 1.00395 1.21921 0.87282 0.95604 1.00406 1.62294 1.07813 1.54209 1.01490 1.19456 0.93710 0.92487 0.86390 1.21348 1.38967 1.04266 0.91187 0.92550 1.25783 0.95162 0.96282 1.01907 1.70058 1.43220 1.20507 1.23398 0.85546 0.78760 0.78830 0.78153 1.19688 1.20800 1.19365 1.20949 1.00754 0.94503 0.86778 1.22752 0.92069 0.96092 0.96209 1.22598 1.01666 0.93692 0.96017 1.22884 0.97464 0.98611 0.94275 1.24920 0.92193 0.95456 1.00942 1.72916 1.29954 1.05159 1.04377 1.72884 1.15569 1.19098 1.03764 0.92221 0.92102 0.93224 0.92270 0.94118 0.92685 0.91747 0.99916 0.97383 0.92741 0.93788 0.88547 0.81470 0.78887 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.91 71.98 0.71 -3.73 16 2 C -0.15 -5.87 5.28 30.59 0.16 -5.70 16 3 C 0.08 3.20 4.90 86.30 0.42 3.62 16 4 N -0.53 -23.32 4.69 -905.38 -4.24 -27.57 16 5 C 0.21 10.73 4.53 85.56 0.39 11.11 16 6 C -0.52 -29.28 8.39 25.60 0.21 -29.07 16 7 H 0.06 3.17 7.37 -2.91 -0.02 3.15 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 10 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.10 3.61 5.09 85.56 0.44 4.05 16 15 C 0.07 2.36 5.77 42.63 0.25 2.61 16 16 C -0.11 -2.62 9.85 22.51 0.22 -2.40 16 17 C -0.10 -1.77 10.21 22.51 0.23 -1.54 16 18 C 0.03 0.59 11.31 84.77 0.96 1.55 16 19 N -0.28 -8.52 11.50 -57.26 -0.66 -9.18 16 20 N -0.27 -9.26 9.99 -47.63 -0.48 -9.74 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.29 6.33 -2.38 -0.02 2.27 16 25 H 0.04 1.85 6.29 -2.39 -0.02 1.84 16 26 H 0.05 2.53 6.97 -2.39 -0.02 2.51 16 27 H 0.06 2.62 6.25 -2.39 -0.01 2.60 16 28 H -0.02 -0.95 6.02 -2.39 -0.01 -0.97 16 29 H 0.01 0.45 7.91 -2.39 -0.02 0.43 16 30 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 32 H 0.10 3.21 7.83 -2.39 -0.02 3.19 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -68.23 288.97 2.46 -65.77 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.07 Total: 8.12 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.45 Total: -18.64 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -5.09 Total: -101.61 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.23 2.46 -65.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139970710.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.503 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds