Wall clock time and date at job start Sun Mar 29 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.52999 * 109.46861 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47302 * 180.02562 * 4 3 2 6 6 C 1.36933 * 119.99642 * 275.25654 * 5 4 3 7 7 H 1.08003 * 120.00404 * 34.00464 * 6 5 4 8 8 C 1.38814 * 119.99997 * 213.99462 * 6 5 4 9 9 N 1.31621 * 119.99953 * 23.49080 * 8 6 5 10 10 Si 1.86798 * 120.00125 * 203.48187 * 8 6 5 11 11 H 1.48505 * 109.46807 * 60.00833 * 10 8 6 12 12 H 1.48502 * 109.46951 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47535 * 300.00632 * 10 8 6 14 14 C 1.46496 * 120.00273 * 95.25647 * 5 4 3 15 15 C 1.50700 * 109.47076 * 270.00281 * 14 5 4 16 16 C 1.38613 * 120.07781 * 95.25873 * 15 14 5 17 17 C 1.38882 * 117.96886 * 180.28316 * 16 15 14 18 18 C 1.38607 * 117.96861 * 359.46757 * 17 16 15 19 19 N 1.31934 * 119.84696 * 0.27219 * 18 17 16 20 20 N 1.28347 * 122.18448 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47402 * 59.99464 * 1 2 3 22 22 H 1.08994 * 109.47351 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46676 * 299.99850 * 1 2 3 24 24 H 1.09004 * 109.46676 * 240.00150 * 2 1 3 25 25 H 1.08992 * 109.47047 * 120.00194 * 2 1 3 26 26 H 1.09004 * 109.47291 * 60.00526 * 3 2 1 27 27 H 1.08992 * 109.47386 * 299.99987 * 3 2 1 28 28 H 1.08997 * 109.47382 * 59.99950 * 4 3 2 29 29 H 1.09003 * 109.47314 * 299.99939 * 4 3 2 30 30 H 0.96993 * 120.00323 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47391 * 149.99979 * 14 5 4 32 32 H 1.09005 * 109.46976 * 29.99825 * 14 5 4 33 33 H 1.08003 * 121.01741 * 0.02562 * 16 15 14 34 34 H 1.07998 * 121.01389 * 179.73688 * 17 16 15 35 35 H 1.08003 * 120.07797 * 180.29585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1837 3.5060 -1.1806 7 1 3.4846 3.3278 -1.9843 8 6 5.2092 4.4271 -1.3444 9 7 6.3002 4.3342 -0.6139 10 14 5.0412 5.7982 -2.6019 11 1 3.8591 6.6331 -2.2687 12 1 6.2641 6.6405 -2.5821 13 1 4.8670 5.2109 -3.9545 14 6 4.4127 3.4748 1.2635 15 6 3.2004 4.1696 1.8278 16 6 2.4080 3.5300 2.7683 17 6 1.2980 4.2085 3.2545 18 6 1.0576 5.4875 2.7777 19 7 1.8708 6.0192 1.8852 20 7 2.8933 5.3900 1.4314 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6767 1.9563 -0.8899 28 1 3.9330 0.9288 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 7.0169 4.9775 -0.7286 31 1 5.2013 4.2062 1.0868 32 1 4.7646 2.7252 1.9724 33 1 2.6442 2.5328 3.1093 34 1 0.6447 3.7550 3.9852 35 1 0.2068 6.0478 3.1363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139971851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:10 Heat of formation + Delta-G solvation = 63.379334 kcal Electronic energy + Delta-G solvation = -16881.688328 eV Core-core repulsion = 14301.557023 eV Total energy + Delta-G solvation = -2580.131305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24669 -36.50152 -34.24853 -32.59653 -32.09265 -31.10325 -28.18638 -26.30316 -24.11254 -23.87126 -22.42108 -20.84839 -20.23949 -16.89608 -16.72045 -16.32739 -15.11205 -14.94822 -14.48817 -14.23996 -13.65007 -13.56036 -13.31714 -12.84207 -12.59718 -12.22827 -11.97822 -11.20936 -11.14176 -10.87601 -10.72545 -10.57465 -10.49906 -10.24180 -10.10640 -9.94616 -9.89543 -9.62394 -8.99825 -8.89212 -8.43621 -6.70245 -5.82200 -3.34111 1.41123 1.60108 3.45601 3.51641 3.61529 4.22717 4.55478 4.78580 5.07790 5.13279 5.19813 5.26605 5.30418 5.42263 5.50779 5.52857 5.67210 5.87305 6.00994 6.07766 6.20942 6.26716 6.29084 6.30044 6.36673 6.51657 6.57429 6.79905 6.88716 6.91238 7.08410 7.55402 7.81907 8.45452 9.11870 9.52613 9.77781 10.28991 11.19264 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.011112 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.976716 B = 2519.144761 C = 3553.022800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.147 3.853 5 N -0.568 5.568 6 C -0.258 4.258 7 H 0.060 0.940 8 C 0.025 3.975 9 N -0.881 5.881 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.180 3.820 15 C 0.080 3.920 16 C -0.123 4.123 17 C -0.132 4.132 18 C 0.004 3.996 19 N -0.251 5.251 20 N -0.223 5.223 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.258 0.742 31 H 0.121 0.879 32 H 0.046 0.954 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 -5.659 7.116 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.020 3.980 5 N -0.286 5.286 6 C -0.388 4.388 7 H 0.078 0.922 8 C -0.176 4.176 9 N -0.522 5.522 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.052 3.948 15 C -0.067 4.067 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.161 4.161 19 N -0.093 5.093 20 N -0.066 5.066 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.010 -4.273 6.108 10.942 hybrid contribution -0.849 -0.497 0.435 1.075 sum -8.859 -4.770 6.542 12.001 Atomic orbital electron populations 1.21762 0.96768 1.00631 1.01491 1.21490 0.95023 0.98132 1.01332 1.22261 0.99621 0.94644 1.01501 1.20961 0.91106 0.86631 0.99267 1.43713 1.75147 1.07922 1.01810 1.18883 1.07920 1.19607 0.92343 0.92223 1.24985 0.93864 1.00602 0.98187 1.69927 1.04467 1.35628 1.42215 0.86454 0.77579 0.82643 0.80666 1.20179 1.21559 1.21008 1.20109 0.91773 0.96688 0.86269 1.24674 1.00038 0.91836 0.90157 1.22310 0.94950 1.00931 0.97169 1.22218 0.97735 0.95934 1.00217 1.24050 1.00536 0.94577 0.96918 1.73064 0.99780 1.29500 1.06916 1.73133 1.08406 1.07434 1.17652 0.93036 0.93442 0.93265 0.92341 0.92652 0.93193 0.92489 0.93129 0.94511 0.93242 0.86225 0.93529 0.84525 0.84685 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.48 5.51 -26.73 -0.15 -2.63 16 4 C 0.15 2.93 5.72 -4.04 -0.02 2.91 16 5 N -0.57 -13.68 2.44 -174.61 -0.43 -14.11 16 6 C -0.26 -7.03 9.48 -15.06 -0.14 -7.17 16 7 H 0.06 1.65 7.93 -52.48 -0.42 1.24 16 8 C 0.02 0.69 4.94 -17.43 -0.09 0.60 16 9 N -0.88 -25.02 11.35 55.49 0.63 -24.39 16 10 Si 0.90 22.54 29.61 -169.99 -5.03 17.50 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.18 4.14 5.67 -5.20 -0.03 4.11 16 15 C 0.08 1.70 6.36 -82.41 -0.52 1.17 16 16 C -0.12 -2.06 8.40 -39.20 -0.33 -2.39 16 17 C -0.13 -1.92 10.21 -39.21 -0.40 -2.32 16 18 C 0.00 0.07 11.31 -17.37 -0.20 -0.12 16 19 N -0.25 -5.31 11.50 30.55 0.35 -4.96 16 20 N -0.22 -5.28 11.43 33.60 0.38 -4.89 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.90 6.52 -51.93 -0.34 0.56 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.12 3.19 5.34 -51.93 -0.28 2.91 16 32 H 0.05 0.95 7.77 -51.93 -0.40 0.55 16 33 H 0.14 1.92 8.06 -52.48 -0.42 1.49 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -30.49 295.92 -6.51 -37.00 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.20 Total: -1.42 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.67 Total: -9.20 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.94 Total: -48.35 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.49 -6.51 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139971851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.380 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds