Wall clock time and date at job start Sun Mar 29 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.52999 * 109.46861 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47302 * 180.02562 * 4 3 2 6 6 C 1.36933 * 119.99642 * 275.25654 * 5 4 3 7 7 H 1.08003 * 120.00404 * 34.00464 * 6 5 4 8 8 C 1.38814 * 119.99997 * 213.99462 * 6 5 4 9 9 N 1.31621 * 119.99953 * 23.49080 * 8 6 5 10 10 Si 1.86798 * 120.00125 * 203.48187 * 8 6 5 11 11 H 1.48505 * 109.46807 * 60.00833 * 10 8 6 12 12 H 1.48502 * 109.46951 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47535 * 300.00632 * 10 8 6 14 14 C 1.46496 * 120.00273 * 95.25647 * 5 4 3 15 15 C 1.50700 * 109.47076 * 270.00281 * 14 5 4 16 16 C 1.38613 * 120.07781 * 95.25873 * 15 14 5 17 17 C 1.38882 * 117.96886 * 180.28316 * 16 15 14 18 18 C 1.38607 * 117.96861 * 359.46757 * 17 16 15 19 19 N 1.31934 * 119.84696 * 0.27219 * 18 17 16 20 20 N 1.28347 * 122.18448 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47402 * 59.99464 * 1 2 3 22 22 H 1.08994 * 109.47351 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46676 * 299.99850 * 1 2 3 24 24 H 1.09004 * 109.46676 * 240.00150 * 2 1 3 25 25 H 1.08992 * 109.47047 * 120.00194 * 2 1 3 26 26 H 1.09004 * 109.47291 * 60.00526 * 3 2 1 27 27 H 1.08992 * 109.47386 * 299.99987 * 3 2 1 28 28 H 1.08997 * 109.47382 * 59.99950 * 4 3 2 29 29 H 1.09003 * 109.47314 * 299.99939 * 4 3 2 30 30 H 0.96993 * 120.00323 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47391 * 149.99979 * 14 5 4 32 32 H 1.09005 * 109.46976 * 29.99825 * 14 5 4 33 33 H 1.08003 * 121.01741 * 0.02562 * 16 15 14 34 34 H 1.07998 * 121.01389 * 179.73688 * 17 16 15 35 35 H 1.08003 * 120.07797 * 180.29585 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1837 3.5060 -1.1806 7 1 3.4846 3.3278 -1.9843 8 6 5.2092 4.4271 -1.3444 9 7 6.3002 4.3342 -0.6139 10 14 5.0412 5.7982 -2.6019 11 1 3.8591 6.6331 -2.2687 12 1 6.2641 6.6405 -2.5821 13 1 4.8670 5.2109 -3.9545 14 6 4.4127 3.4748 1.2635 15 6 3.2004 4.1696 1.8278 16 6 2.4080 3.5300 2.7683 17 6 1.2980 4.2085 3.2545 18 6 1.0576 5.4875 2.7777 19 7 1.8708 6.0192 1.8852 20 7 2.8933 5.3900 1.4314 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6767 1.9563 -0.8899 28 1 3.9330 0.9288 -0.8908 29 1 3.9337 0.9285 0.8891 30 1 7.0169 4.9775 -0.7286 31 1 5.2013 4.2062 1.0868 32 1 4.7646 2.7252 1.9724 33 1 2.6442 2.5328 3.1093 34 1 0.6447 3.7550 3.9852 35 1 0.2068 6.0478 3.1363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139971851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:09 Heat of formation + Delta-G solvation = 44.546972 kcal Electronic energy + Delta-G solvation = -16882.504961 eV Core-core repulsion = 14301.557023 eV Total energy + Delta-G solvation = -2580.947937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69142 -38.16367 -35.65389 -34.09429 -33.65053 -32.80627 -29.63406 -28.08340 -25.74585 -25.27997 -23.82242 -22.33954 -21.75002 -18.80391 -18.18115 -17.60018 -16.86395 -16.35610 -16.11666 -15.74544 -15.48116 -14.93454 -14.79155 -14.12882 -13.95740 -13.62914 -13.33344 -13.11183 -12.82011 -12.58205 -12.44985 -12.13413 -11.99301 -11.88480 -11.72753 -11.54019 -11.37923 -10.94152 -10.58967 -10.47086 -10.27877 -8.64861 -7.86684 -5.42229 0.09556 0.24648 1.39820 1.46870 1.54488 2.49383 2.81050 3.23915 3.42444 3.73292 3.86850 3.95351 4.03569 4.14469 4.28042 4.31503 4.41286 4.54797 4.60782 4.82727 4.86798 4.97713 5.00945 5.05400 5.07494 5.18883 5.34092 5.40124 5.48814 5.52460 5.61446 5.65990 5.72612 6.43462 7.13413 7.83493 8.08060 8.30283 9.09722 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.011112 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.976716 B = 2519.144761 C = 3553.022800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.584 5.584 6 C -0.259 4.259 7 H 0.044 0.956 8 C -0.016 4.016 9 N -0.905 5.905 10 Si 0.939 3.061 11 H -0.294 1.294 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.183 3.817 15 C 0.063 3.937 16 C -0.121 4.121 17 C -0.108 4.108 18 C 0.013 3.987 19 N -0.297 5.297 20 N -0.283 5.283 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.253 0.747 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.169 0.831 34 H 0.193 0.807 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -7.298 9.345 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.019 3.981 5 N -0.304 5.304 6 C -0.389 4.389 7 H 0.062 0.938 8 C -0.215 4.215 9 N -0.548 5.548 10 Si 0.768 3.232 11 H -0.221 1.221 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.055 3.945 15 C -0.085 4.085 16 C -0.151 4.151 17 C -0.137 4.137 18 C -0.153 4.153 19 N -0.136 5.136 20 N -0.125 5.125 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.187 0.813 34 H 0.211 0.789 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.438 -5.910 8.328 14.602 hybrid contribution -0.249 -0.005 -0.090 0.265 sum -10.687 -5.914 8.237 14.732 Atomic orbital electron populations 1.21735 0.95338 1.02034 1.01275 1.21448 0.96220 0.95375 1.02321 1.22054 0.97579 0.96959 0.99898 1.21096 0.92632 0.84697 0.99667 1.43846 1.75733 1.09488 1.01302 1.18905 1.06909 1.19760 0.93345 0.93790 1.25430 0.94049 1.02173 0.99806 1.70012 1.04912 1.36192 1.43713 0.85786 0.76586 0.80849 0.79933 1.22086 1.21339 1.19883 1.19876 0.91903 0.96343 0.86386 1.24342 0.99989 0.91973 0.92199 1.22595 0.94736 1.02116 0.95609 1.22811 0.96838 0.94578 0.99442 1.24842 1.00131 0.95737 0.94628 1.72932 1.00636 1.30634 1.09437 1.72981 1.10446 1.09150 1.19929 0.94110 0.91232 0.92676 0.92420 0.90619 0.93065 0.95766 0.94615 0.92086 0.93800 0.90318 0.91374 0.81323 0.78938 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.12 -2.92 5.93 30.59 0.18 -2.74 16 3 C -0.13 -4.26 5.51 30.59 0.17 -4.09 16 4 C 0.14 5.67 5.72 86.38 0.49 6.17 16 5 N -0.58 -28.61 2.44 -706.34 -1.73 -30.33 16 6 C -0.26 -14.60 9.48 84.03 0.80 -13.80 16 7 H 0.04 2.56 7.93 -2.91 -0.02 2.53 16 8 C -0.02 -0.93 4.94 84.86 0.42 -0.51 16 9 N -0.90 -53.47 11.35 21.65 0.25 -53.23 16 10 Si 0.94 48.11 29.61 68.60 2.03 50.14 16 11 H -0.29 -15.73 7.11 99.48 0.71 -15.02 16 12 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 14 C 0.18 8.52 5.67 85.63 0.49 9.00 16 15 C 0.06 2.66 6.36 42.63 0.27 2.93 16 16 C -0.12 -3.61 8.40 22.51 0.19 -3.43 16 17 C -0.11 -2.57 10.21 22.51 0.23 -2.34 16 18 C 0.01 0.37 11.31 84.77 0.96 1.33 16 19 N -0.30 -12.37 11.50 -57.26 -0.66 -13.03 16 20 N -0.28 -13.64 11.43 -47.62 -0.54 -14.18 16 21 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.71 6.52 -2.38 -0.02 1.70 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.06 2.08 7.83 -2.39 -0.02 2.07 16 30 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.08 4.38 5.34 -2.39 -0.01 4.37 16 32 H 0.07 2.75 7.77 -2.38 -0.02 2.73 16 33 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.20 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.33 295.92 5.31 -66.01 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.06 Total: 4.57 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.91 Total: -9.96 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -2.68 Total: -110.77 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -71.33 5.31 -66.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139971851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.560 kcal (2) G-P(sol) polarization free energy of solvation -71.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds