Wall clock time and date at job start Sun Mar 29 2020 22:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46870 * 2 1 4 4 N 1.46901 * 109.46586 * 181.44835 * 3 2 1 5 5 C 1.46900 * 111.00228 * 75.81028 * 4 3 2 6 6 C 1.50700 * 109.47587 * 195.92711 * 5 4 3 7 7 H 1.08003 * 119.99407 * 355.45588 * 6 5 4 8 8 C 1.37876 * 120.00054 * 175.45724 * 6 5 4 9 9 N 1.31516 * 120.00084 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99757 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47242 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47203 * 120.00194 * 10 8 6 13 13 H 1.48508 * 109.46940 * 240.00141 * 10 8 6 14 14 C 1.46904 * 110.99834 * 199.75941 * 4 3 2 15 15 C 1.50704 * 109.46967 * 66.05188 * 14 4 3 16 16 C 1.38918 * 121.00905 * 269.71352 * 15 14 4 17 17 C 1.38574 * 117.96943 * 179.78933 * 16 15 14 18 18 N 1.31953 * 119.84579 * 0.49488 * 17 16 15 19 19 N 1.28347 * 122.18117 * 359.74429 * 18 17 16 20 20 C 1.31962 * 122.18135 * 0.02562 * 19 18 17 21 21 H 1.08990 * 109.46934 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47076 * 300.00168 * 1 2 3 23 23 H 1.09000 * 109.46597 * 59.99698 * 1 2 3 24 24 H 1.08997 * 109.47076 * 239.99832 * 2 1 3 25 25 H 1.08999 * 109.46720 * 119.99524 * 2 1 3 26 26 H 1.09001 * 109.47578 * 61.45543 * 3 2 1 27 27 H 1.08994 * 109.47233 * 301.44820 * 3 2 1 28 28 H 1.09005 * 109.46894 * 315.93032 * 5 4 3 29 29 H 1.09006 * 109.47369 * 75.92237 * 5 4 3 30 30 H 0.96992 * 119.99802 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47013 * 186.04495 * 14 4 3 32 32 H 1.08998 * 109.47541 * 306.04854 * 14 4 3 33 33 H 1.08003 * 121.02004 * 0.02562 * 16 15 14 34 34 H 1.08003 * 120.07607 * 180.22197 * 17 16 15 35 35 H 1.08000 * 120.07387 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5086 1.4426 -0.0350 5 6 4.0032 1.1176 -1.3795 6 6 5.4611 0.7438 -1.3019 7 1 5.9881 0.8178 -0.3620 8 6 6.1219 0.3074 -2.4305 9 7 5.4802 0.2178 -3.5749 10 14 7.9291 -0.1553 -2.3343 11 1 8.4153 0.0342 -0.9440 12 1 8.0978 -1.5769 -2.7288 13 1 8.7112 0.7098 -3.2538 14 6 4.0461 2.7294 0.4268 15 6 3.7224 2.9140 1.8871 16 6 2.5482 3.5399 2.2862 17 6 2.3118 3.6722 3.6452 18 7 3.1960 3.2178 4.5129 19 7 4.2831 2.6439 4.1440 20 6 4.5897 2.4702 2.8723 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6982 1.9488 0.9027 27 1 1.6556 1.9637 -0.8767 28 1 3.4343 0.2801 -1.7833 29 1 3.8845 1.9845 -2.0297 30 1 5.9452 -0.0888 -4.3689 31 1 5.1274 2.7415 0.2901 32 1 3.5979 3.5385 -0.1498 33 1 1.8393 3.9087 1.5596 34 1 1.4080 4.1501 3.9934 35 1 5.5139 1.9822 2.6002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139982875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:57 Heat of formation + Delta-G solvation = 30.356452 kcal Electronic energy + Delta-G solvation = -16471.156299 eV Core-core repulsion = 13889.593014 eV Total energy + Delta-G solvation = -2581.563284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96796 -38.93789 -35.04025 -34.92858 -33.56419 -33.16253 -29.35333 -28.27616 -25.87345 -25.41184 -24.10270 -22.74019 -21.41750 -18.67159 -18.40132 -17.65237 -17.02340 -16.77634 -16.18669 -15.74520 -15.60803 -15.33687 -14.90082 -14.33818 -14.09018 -13.83150 -13.37317 -13.20233 -12.97881 -12.65498 -12.58843 -12.34181 -12.04785 -11.88162 -11.74326 -11.42343 -11.31258 -10.98559 -10.80715 -10.67190 -10.55966 -9.05950 -8.19554 -6.28441 -0.18473 0.04381 1.41097 1.43333 1.55268 2.40600 2.60066 3.12874 3.26072 3.31522 3.57938 3.64320 3.79992 3.94821 4.06992 4.21929 4.45357 4.51561 4.60759 4.66487 4.69206 4.81009 4.85544 4.94425 5.10976 5.15901 5.17787 5.28166 5.34103 5.36896 5.43595 5.67844 6.07450 6.30742 6.58925 6.87184 7.41234 7.75243 8.91317 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.007535 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.850295 B = 3715.197714 C = 4697.552303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.049 3.951 4 N -0.539 5.539 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.101 3.899 15 C -0.067 4.067 16 C -0.110 4.110 17 C 0.047 3.953 18 N -0.283 5.283 19 N -0.276 5.276 20 C 0.052 3.948 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.013 0.987 29 H -0.033 1.033 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.176 0.824 34 H 0.211 0.789 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 6.302 8.692 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.078 4.078 4 N -0.264 5.264 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.208 1.208 13 H -0.206 1.206 14 C -0.027 4.027 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.118 4.118 18 N -0.125 5.125 19 N -0.117 5.117 20 C -0.113 4.113 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.044 0.956 28 H 0.031 0.969 29 H -0.016 1.016 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.193 0.807 34 H 0.227 0.773 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.090 5.679 10.451 14.385 hybrid contribution 0.424 0.274 -2.649 2.697 sum -7.667 5.953 7.802 12.453 Atomic orbital electron populations 1.21676 0.93554 1.02277 1.02252 1.21445 0.96697 0.96314 1.01009 1.22291 0.87603 0.97447 1.00496 1.62051 1.07678 1.29216 1.27433 1.19411 0.95005 0.93626 0.83553 1.21519 0.95716 1.43322 0.95213 0.91718 1.25818 1.02860 0.95683 0.94997 1.70073 1.38302 1.48531 1.00579 0.85442 0.79630 0.77691 0.78531 1.18627 1.20832 1.20554 1.20884 1.01697 0.91084 0.89015 1.21143 0.94935 0.94655 0.97123 1.22689 0.96568 0.96455 0.98235 1.24827 1.00360 0.96059 0.90518 1.72839 0.98803 1.07274 1.33545 1.72947 1.11412 1.10206 1.17096 1.24336 1.01122 0.96074 0.89730 0.92049 0.91372 0.92602 0.94419 0.92704 0.89588 0.95578 0.96921 1.01567 0.92785 0.89914 0.93172 0.80651 0.77272 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.12 -3.73 6.06 30.60 0.19 -3.55 16 3 C 0.05 1.59 4.84 86.30 0.42 2.01 16 4 N -0.54 -21.25 4.37 -905.34 -3.96 -25.21 16 5 C 0.21 10.48 4.55 85.56 0.39 10.87 16 6 C -0.52 -28.03 8.53 25.60 0.22 -27.81 16 7 H 0.06 3.41 7.43 -2.91 -0.02 3.39 16 8 C 0.00 0.25 5.46 84.65 0.46 0.71 16 9 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 10 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.10 3.40 5.01 85.56 0.43 3.83 16 15 C -0.07 -1.90 4.97 -19.62 -0.10 -2.00 16 16 C -0.11 -2.37 8.12 22.51 0.18 -2.19 16 17 C 0.05 0.98 11.31 84.75 0.96 1.94 16 18 N -0.28 -8.29 11.50 -57.27 -0.66 -8.95 16 19 N -0.28 -9.02 11.50 -57.27 -0.66 -9.68 16 20 C 0.05 1.62 11.03 84.75 0.93 2.55 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 1.43 6.72 -2.39 -0.02 1.41 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.28 5.04 -2.39 -0.01 2.26 16 27 H 0.03 0.85 8.00 -2.39 -0.02 0.83 16 28 H 0.01 0.70 6.52 -2.38 -0.02 0.68 16 29 H -0.03 -1.79 8.05 -2.38 -0.02 -1.81 16 30 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.08 3.07 6.98 -2.39 -0.02 3.06 16 32 H 0.05 1.56 8.09 -2.39 -0.02 1.54 16 33 H 0.18 2.66 7.70 -2.91 -0.02 2.64 16 34 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.17 5.14 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -65.13 292.84 2.89 -62.23 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.06 Total: 6.95 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.79 Total: -16.21 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -4.99 Total: -98.27 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -65.13 2.89 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139982875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.589 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds