Wall clock time and date at job start Sun Mar 29 2020 21:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99972 * 2 1 4 4 C 1.53007 * 109.46857 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.38361 * 119.99923 * 179.97438 * 5 4 3 7 7 C 1.39708 * 119.43392 * 359.73551 * 6 5 4 8 8 C 1.36555 * 119.49540 * 180.27864 * 7 6 5 9 9 C 1.41330 * 118.41052 * 359.97438 * 8 7 6 10 10 C 1.41195 * 120.57095 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00266 * 204.90188 * 10 9 8 12 12 C 1.39871 * 119.99966 * 24.89949 * 10 9 8 13 13 N 1.30900 * 120.00083 * 14.68510 * 12 10 9 14 14 Si 1.86806 * 119.99959 * 194.69109 * 12 10 9 15 15 H 1.48499 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47328 * 119.99849 * 14 12 10 17 17 H 1.48502 * 109.46724 * 239.99947 * 14 12 10 18 18 C 1.40752 * 118.85494 * 0.02562 * 9 8 7 19 19 C 1.50701 * 119.81278 * 180.02562 * 18 9 8 20 20 N 1.31477 * 120.37346 * 0.02562 * 18 9 8 21 21 H 1.09003 * 109.46475 * 299.99522 * 1 2 3 22 22 H 1.08992 * 109.46914 * 59.99629 * 1 2 3 23 23 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.00902 * 110.99896 * 236.04635 * 2 1 3 25 25 H 1.08993 * 109.47266 * 60.00514 * 3 2 1 26 26 H 1.08993 * 109.47445 * 299.99959 * 3 2 1 27 27 H 1.09001 * 109.46908 * 60.00388 * 4 3 2 28 28 H 1.08997 * 109.47483 * 299.99731 * 4 3 2 29 29 H 0.97000 * 119.99721 * 0.02562 * 5 4 3 30 30 H 1.07996 * 120.24964 * 0.25045 * 7 6 5 31 31 H 1.08002 * 120.79768 * 179.97438 * 8 7 6 32 32 H 0.97008 * 119.99873 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.47559 * 269.97854 * 19 18 9 34 34 H 1.09003 * 109.47008 * 29.98033 * 19 18 9 35 35 H 1.09002 * 109.46929 * 149.97894 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3305 -0.0006 5 7 4.0500 2.6983 -0.0013 6 6 5.4166 2.9147 -0.0014 7 6 6.2850 1.8203 0.0047 8 6 7.6340 2.0324 0.0104 9 6 8.1051 3.3649 0.0093 10 6 9.4907 3.6367 0.0156 11 1 9.8554 4.5741 0.4088 12 6 10.3910 2.6918 -0.4875 13 7 9.9552 1.6963 -1.2173 14 14 12.2152 2.8504 -0.1177 15 1 12.4474 4.0536 0.7212 16 1 12.6798 1.6420 0.6097 17 1 12.9685 2.9822 -1.3907 18 6 7.1693 4.4163 0.0030 19 6 7.6479 5.8453 0.0012 20 7 5.8801 4.1587 -0.0012 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8306 -0.5261 -0.7814 25 1 1.6461 1.8947 0.8900 26 1 1.6460 1.8948 -0.8899 27 1 3.8741 0.8074 -0.8909 28 1 3.8749 0.8071 0.8891 29 1 3.4396 3.4521 -0.0008 30 1 5.8924 0.8142 0.0054 31 1 8.3244 1.2019 0.0156 32 1 10.5797 1.0412 -1.5665 33 1 7.7590 6.1926 1.0284 34 1 8.6094 5.9058 -0.5088 35 1 6.9215 6.4710 -0.5174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156897115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:33 Heat of formation + Delta-G solvation = 7.352615 kcal Electronic energy + Delta-G solvation = -15967.375001 eV Core-core repulsion = 13384.814196 eV Total energy + Delta-G solvation = -2582.560806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51165 -38.03003 -36.32598 -35.19703 -32.91842 -32.21243 -29.58260 -28.63783 -26.20306 -25.13317 -23.45302 -22.93406 -21.55343 -19.10300 -18.21287 -17.06109 -16.99893 -16.71796 -15.77941 -15.57309 -15.37702 -15.00645 -14.53542 -14.37013 -14.12279 -13.57817 -13.45606 -13.26648 -13.10533 -12.80780 -12.65238 -12.58643 -12.40228 -12.30451 -12.15148 -11.50627 -11.18057 -10.36633 -10.00618 -9.89818 -9.48172 -8.62493 -8.36750 -6.08912 0.88955 1.13830 1.43428 1.56750 1.58356 2.26601 2.48026 2.85120 3.50895 3.76857 3.94610 4.11877 4.19790 4.48377 4.53820 4.61174 4.62781 4.70898 4.76022 4.91978 4.97856 5.02328 5.03301 5.08770 5.22984 5.39631 5.55711 5.67366 5.89683 5.94480 6.03034 6.37101 6.51281 6.65061 6.87308 6.97347 7.15525 7.87770 8.43984 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040878 B = 0.005054 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.801140 B = 5538.596798 C = 6137.107998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.703 5.703 3 C 0.063 3.937 4 C 0.146 3.854 5 N -0.736 5.736 6 C 0.286 3.714 7 C -0.216 4.216 8 C -0.110 4.110 9 C -0.002 4.002 10 C -0.480 4.480 11 H 0.083 0.917 12 C 0.030 3.970 13 N -0.841 5.841 14 Si 0.981 3.019 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.270 1.270 18 C 0.020 3.980 19 C -0.064 4.064 20 N -0.536 5.536 21 H 0.065 0.935 22 H 0.028 0.972 23 H 0.082 0.918 24 H 0.349 0.651 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.396 0.604 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.284 0.716 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.191 -2.484 0.871 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.335 5.335 3 C -0.067 4.067 4 C 0.020 3.980 5 N -0.375 5.375 6 C 0.052 3.948 7 C -0.240 4.240 8 C -0.137 4.137 9 C -0.007 4.007 10 C -0.511 4.511 11 H 0.101 0.899 12 C -0.182 4.182 13 N -0.469 5.469 14 Si 0.803 3.197 15 H -0.179 1.179 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.118 4.118 19 C -0.121 4.121 20 N -0.254 5.254 21 H 0.084 0.916 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.167 0.833 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.230 0.770 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.644 -2.258 1.418 10.973 hybrid contribution 0.988 -0.398 -0.948 1.426 sum -9.655 -2.657 0.471 10.025 Atomic orbital electron populations 1.22244 0.86080 1.02943 1.00796 1.60269 1.09251 1.13201 1.50780 1.21918 0.92610 0.90700 1.01468 1.21009 0.93579 0.82853 1.00514 1.43569 1.01463 1.07139 1.85341 1.18028 0.85710 0.88863 1.02210 1.20991 0.93948 0.97907 1.11113 1.21366 0.94016 0.97771 1.00520 1.18524 0.95037 0.91926 0.95252 1.19610 0.90926 1.03510 1.37030 0.89867 1.26707 1.05812 0.93681 0.91999 1.69880 1.38817 1.12633 1.25572 0.85161 0.76190 0.79448 0.78918 1.17937 1.19369 1.19487 1.21309 0.87164 0.96635 1.06682 1.20241 1.00427 0.90103 1.01335 1.66444 1.17499 1.21569 1.19848 0.91597 0.95350 0.89965 0.83277 0.90311 0.94093 0.93529 0.93062 0.76977 0.86483 0.86611 0.90535 0.91940 0.91452 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.70 127.69 1.37 1.80 16 2 N -0.70 -13.82 6.86 -537.16 -3.68 -17.50 16 3 C 0.06 1.39 5.80 86.31 0.50 1.89 16 4 C 0.15 4.25 5.13 86.38 0.44 4.70 16 5 N -0.74 -26.62 5.70 -344.84 -1.97 -28.58 16 6 C 0.29 13.32 7.64 133.32 1.02 14.34 16 7 C -0.22 -10.42 9.24 22.23 0.21 -10.21 16 8 C -0.11 -5.93 8.73 22.64 0.20 -5.73 16 9 C 0.00 -0.13 5.59 -21.18 -0.12 -0.24 16 10 C -0.48 -25.60 8.16 23.39 0.19 -25.41 16 11 H 0.08 4.22 6.84 -2.91 -0.02 4.20 16 12 C 0.03 1.53 5.22 85.23 0.45 1.98 16 13 N -0.84 -44.33 10.83 21.82 0.24 -44.09 16 14 Si 0.98 38.38 29.58 68.60 2.03 40.41 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 18 C 0.02 1.05 6.86 43.23 0.30 1.34 16 19 C -0.06 -2.71 9.58 71.24 0.68 -2.03 16 20 N -0.54 -26.70 10.29 -179.37 -1.85 -28.54 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.35 6.18 8.81 -89.69 -0.79 5.39 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 1.39 7.91 -2.39 -0.02 1.37 16 28 H 0.05 1.60 7.89 -2.39 -0.02 1.58 16 29 H 0.40 13.11 8.59 -92.71 -0.80 12.32 16 30 H 0.12 5.02 6.64 -2.91 -0.02 5.00 16 31 H 0.12 6.44 6.17 -2.91 -0.02 6.43 16 32 H 0.28 13.59 8.30 -92.70 -0.77 12.82 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.85 6.76 -2.39 -0.02 2.83 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -61.79 292.13 -0.48 -62.27 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.48 Total: 33.63 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 5.23 Total: -17.59 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -7.26 Total: -118.72 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -61.79 -0.48 -62.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156897115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.627 kcal (2) G-P(sol) polarization free energy of solvation -61.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds