Wall clock time and date at job start Sun Mar 29 2020 21:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00179 * 2 1 4 4 C 1.52994 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47115 * 180.02562 * 4 3 2 6 6 C 1.38090 * 120.00434 * 180.02562 * 5 4 3 7 7 N 1.32272 * 119.90081 * 359.97438 * 6 5 4 8 8 C 1.31969 * 121.86048 * 179.97438 * 7 6 5 9 9 C 1.50707 * 119.27220 * 179.97438 * 8 7 6 10 10 C 1.38679 * 121.45222 * 0.25903 * 8 7 6 11 11 C 1.38003 * 119.62514 * 359.48715 * 10 8 7 12 12 C 1.41005 * 118.28160 * 0.49573 * 11 10 8 13 13 C 1.41012 * 120.70599 * 179.73036 * 12 11 10 14 14 H 1.07998 * 120.00466 * 155.09811 * 13 12 11 15 15 C 1.39954 * 120.00009 * 335.09814 * 13 12 11 16 16 N 1.30867 * 119.99905 * 343.25217 * 15 13 12 17 17 Si 1.86798 * 119.99978 * 163.25570 * 15 13 12 18 18 H 1.48498 * 109.47682 * 94.67781 * 17 15 13 19 19 H 1.48508 * 109.47116 * 214.68239 * 17 15 13 20 20 H 1.48503 * 109.47189 * 334.67946 * 17 15 13 21 21 H 1.09001 * 109.47265 * 59.99827 * 1 2 3 22 22 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47108 * 299.99951 * 1 2 3 24 24 H 1.00902 * 110.99840 * 236.04649 * 2 1 3 25 25 H 1.08999 * 109.47141 * 59.99975 * 3 2 1 26 26 H 1.09002 * 109.47242 * 300.00293 * 3 2 1 27 27 H 1.08999 * 109.47300 * 59.99920 * 4 3 2 28 28 H 1.09002 * 109.47220 * 300.00154 * 4 3 2 29 29 H 0.97010 * 120.00149 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.47027 * 89.99893 * 9 8 7 31 31 H 1.09004 * 109.47060 * 329.99961 * 9 8 7 32 32 H 1.08999 * 109.47431 * 210.00655 * 9 8 7 33 33 H 1.07999 * 120.18840 * 179.74144 * 10 8 7 34 34 H 1.07999 * 120.85874 * 180.22219 * 11 10 8 35 35 H 0.97005 * 119.99677 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6982 0.0000 6 6 5.4138 2.9143 -0.0010 7 7 6.2445 1.8849 -0.0019 8 6 7.5542 2.0467 -0.0034 9 6 8.4467 0.8323 -0.0038 10 6 8.1274 3.3095 0.0014 11 6 7.3169 4.4265 -0.0029 12 6 5.9195 4.2380 -0.0014 13 6 5.0439 5.3433 0.0000 14 1 4.0431 5.2400 -0.3927 15 6 5.4716 6.5743 0.5104 16 7 6.5338 6.6331 1.2725 17 14 4.5263 8.1332 0.1038 18 1 3.5506 8.4172 1.1866 19 1 5.4746 9.2695 -0.0186 20 1 3.8021 7.9524 -1.1800 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.8740 0.8073 -0.8908 28 1 3.8748 0.8070 0.8891 29 1 3.4395 3.4521 0.0003 30 1 8.6608 0.5391 -1.0316 31 1 7.9453 0.0127 0.5109 32 1 9.3795 1.0667 0.5090 33 1 9.2019 3.4182 0.0043 34 1 7.7420 5.4193 -0.0029 35 1 6.8305 7.4864 1.6260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156897459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:37 Heat of formation + Delta-G solvation = 24.127807 kcal Electronic energy + Delta-G solvation = -16200.317343 eV Core-core repulsion = 13618.483965 eV Total energy + Delta-G solvation = -2581.833379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.58916 -36.60893 -34.39316 -34.00649 -30.93842 -30.15681 -28.27816 -27.28282 -24.50032 -23.55779 -21.99244 -20.67013 -20.39106 -17.21823 -16.33686 -15.70994 -15.60350 -14.91311 -14.28629 -14.08385 -13.80611 -13.58918 -13.02291 -12.92633 -12.48825 -11.99133 -11.83811 -11.72118 -11.50669 -11.41028 -11.32495 -11.06349 -10.89577 -10.77662 -10.48311 -9.76293 -9.24189 -8.81366 -8.48948 -8.03366 -7.84557 -6.79048 -6.46460 -4.19362 2.73393 3.06172 3.08652 3.12861 3.25121 3.92553 4.00324 4.67212 4.80792 5.17293 5.28480 5.42520 5.51385 5.69506 5.77194 5.80143 5.89092 6.17662 6.38994 6.46025 6.48665 6.50031 6.61331 6.83802 6.92365 7.01666 7.14205 7.25155 7.32365 7.68361 7.81556 8.03532 8.30785 8.55372 8.67895 8.80683 9.02690 9.83078 10.22006 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.008387 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.047388 B = 3337.636565 C = 4993.317447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.692 5.692 3 C 0.046 3.954 4 C 0.149 3.851 5 N -0.731 5.731 6 C 0.309 3.691 7 N -0.528 5.528 8 C 0.026 3.974 9 C -0.074 4.074 10 C -0.186 4.186 11 C -0.124 4.124 12 C 0.029 3.971 13 C -0.456 4.456 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.798 5.798 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.262 1.262 21 H 0.020 0.980 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.342 0.658 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.401 0.599 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 -5.289 -2.522 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.083 4.083 4 C 0.023 3.977 5 N -0.371 5.371 6 C 0.071 3.929 7 N -0.246 5.246 8 C -0.109 4.109 9 C -0.131 4.131 10 C -0.208 4.208 11 C -0.150 4.150 12 C 0.022 3.978 13 C -0.488 4.488 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.424 5.424 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.186 1.186 21 H 0.038 0.962 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.160 0.840 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.114 -6.229 -1.690 8.890 hybrid contribution -0.463 2.279 -0.969 2.519 sum -6.577 -3.950 -2.659 8.120 Atomic orbital electron populations 1.22179 0.87870 1.01631 1.00389 1.60272 1.07541 1.14329 1.50118 1.22184 0.95969 0.89377 1.00813 1.20752 0.90137 0.85558 1.01251 1.43578 1.03068 1.05662 1.84814 1.18380 0.84133 0.89202 1.01208 1.66353 1.04008 1.34177 1.20027 1.19974 0.89151 0.93168 1.08567 1.20288 0.96991 0.95598 1.00269 1.21219 0.98407 0.93570 1.07632 1.21332 0.92598 0.97673 1.03390 1.17910 0.93367 0.90616 0.95878 1.19113 0.99674 0.93748 1.36249 0.90839 1.25801 0.95017 1.00593 0.92720 1.69819 1.22087 1.27466 1.23074 0.86352 0.79971 0.80810 0.79879 1.19717 1.20107 1.18606 0.96167 0.91526 0.91721 0.84046 0.90661 0.95014 0.93590 0.92393 0.76230 0.93278 0.92736 0.92912 0.88779 0.85730 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 60.06 0.64 0.94 16 2 N -0.69 -8.74 6.86 -121.13 -0.83 -9.57 16 3 C 0.05 0.66 5.80 -3.83 -0.02 0.64 16 4 C 0.15 2.67 5.94 -4.05 -0.02 2.64 16 5 N -0.73 -15.49 5.61 -59.98 -0.34 -15.82 16 6 C 0.31 7.74 7.52 -155.02 -1.17 6.57 16 7 N -0.53 -13.10 9.44 -8.11 -0.08 -13.17 16 8 C 0.03 0.61 6.79 -82.37 -0.56 0.05 16 9 C -0.07 -1.38 10.15 36.01 0.37 -1.01 16 10 C -0.19 -4.49 9.69 -39.50 -0.38 -4.87 16 11 C -0.12 -3.25 8.79 -38.62 -0.34 -3.59 16 12 C 0.03 0.78 5.60 -106.47 -0.60 0.18 16 13 C -0.46 -11.71 8.52 -37.89 -0.32 -12.03 16 14 H 0.07 1.77 6.68 -52.49 -0.35 1.41 16 15 C 0.08 1.86 5.18 -17.32 -0.09 1.77 16 16 N -0.80 -20.53 10.96 55.55 0.61 -19.92 16 17 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.34 3.92 8.81 -39.29 -0.35 3.58 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.40 8.10 6.67 -40.82 -0.27 7.83 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.12 3.35 6.26 -52.49 -0.33 3.02 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 294.59 15.07 4.44 4.44 Total: -1.00 -28.59 294.59 -8.80 -37.39 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.08 Total: 12.01 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.49 Total: -8.70 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.63 Total: -58.49 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.59 -8.80 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156897459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.514 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds