Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00179 * 2 1 4 4 C 1.52994 * 109.47036 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47115 * 180.02562 * 4 3 2 6 6 C 1.38090 * 120.00434 * 180.02562 * 5 4 3 7 7 N 1.32272 * 119.90081 * 359.97438 * 6 5 4 8 8 C 1.31969 * 121.86048 * 179.97438 * 7 6 5 9 9 C 1.50707 * 119.27220 * 179.97438 * 8 7 6 10 10 C 1.38679 * 121.45222 * 0.25903 * 8 7 6 11 11 C 1.38003 * 119.62514 * 359.48715 * 10 8 7 12 12 C 1.41005 * 118.28160 * 0.49573 * 11 10 8 13 13 C 1.41012 * 120.70599 * 179.73036 * 12 11 10 14 14 H 1.07998 * 120.00466 * 155.09811 * 13 12 11 15 15 C 1.39954 * 120.00009 * 335.09814 * 13 12 11 16 16 N 1.30867 * 119.99905 * 343.25217 * 15 13 12 17 17 Si 1.86798 * 119.99978 * 163.25570 * 15 13 12 18 18 H 1.48498 * 109.47682 * 94.67781 * 17 15 13 19 19 H 1.48508 * 109.47116 * 214.68239 * 17 15 13 20 20 H 1.48503 * 109.47189 * 334.67946 * 17 15 13 21 21 H 1.09001 * 109.47265 * 59.99827 * 1 2 3 22 22 H 1.09001 * 109.47665 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47108 * 299.99951 * 1 2 3 24 24 H 1.00902 * 110.99840 * 236.04649 * 2 1 3 25 25 H 1.08999 * 109.47141 * 59.99975 * 3 2 1 26 26 H 1.09002 * 109.47242 * 300.00293 * 3 2 1 27 27 H 1.08999 * 109.47300 * 59.99920 * 4 3 2 28 28 H 1.09002 * 109.47220 * 300.00154 * 4 3 2 29 29 H 0.97010 * 120.00149 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.47027 * 89.99893 * 9 8 7 31 31 H 1.09004 * 109.47060 * 329.99961 * 9 8 7 32 32 H 1.08999 * 109.47431 * 210.00655 * 9 8 7 33 33 H 1.07999 * 120.18840 * 179.74144 * 10 8 7 34 34 H 1.07999 * 120.85874 * 180.22219 * 11 10 8 35 35 H 0.97005 * 119.99677 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6982 0.0000 6 6 5.4138 2.9143 -0.0010 7 7 6.2445 1.8849 -0.0019 8 6 7.5542 2.0467 -0.0034 9 6 8.4467 0.8323 -0.0038 10 6 8.1274 3.3095 0.0014 11 6 7.3169 4.4265 -0.0029 12 6 5.9195 4.2380 -0.0014 13 6 5.0439 5.3433 0.0000 14 1 4.0431 5.2400 -0.3927 15 6 5.4716 6.5743 0.5104 16 7 6.5338 6.6331 1.2725 17 14 4.5263 8.1332 0.1038 18 1 3.5506 8.4172 1.1866 19 1 5.4746 9.2695 -0.0186 20 1 3.8021 7.9524 -1.1800 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.8740 0.8073 -0.8908 28 1 3.8748 0.8070 0.8891 29 1 3.4395 3.4521 0.0003 30 1 8.6608 0.5391 -1.0316 31 1 7.9453 0.0127 0.5109 32 1 9.3795 1.0667 0.5090 33 1 9.2019 3.4182 0.0043 34 1 7.7420 5.4193 -0.0029 35 1 6.8305 7.4864 1.6260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156897459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 5.173526 kcal Electronic energy + Delta-G solvation = -16201.139263 eV Core-core repulsion = 13618.483965 eV Total energy + Delta-G solvation = -2582.655298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43515 -37.86681 -36.05758 -35.69529 -32.70735 -31.87845 -29.80930 -28.91821 -25.95507 -25.02074 -23.38220 -22.50066 -22.13441 -19.12455 -17.89386 -17.32943 -16.99553 -16.57660 -15.64822 -15.57908 -15.41961 -15.00803 -14.55412 -14.25101 -14.13971 -13.66121 -13.41466 -13.17477 -13.10990 -12.91128 -12.66397 -12.53484 -12.40306 -12.27598 -12.11263 -11.61578 -11.07886 -10.58287 -9.94997 -9.76795 -9.46704 -8.64629 -8.30005 -6.12142 0.91495 1.22486 1.40354 1.49930 1.55516 2.22339 2.61242 2.82100 3.50870 3.77892 3.99045 4.15974 4.23744 4.52421 4.53175 4.56121 4.63803 4.74436 4.85996 4.99468 5.02596 5.04567 5.05808 5.10623 5.20635 5.26633 5.43975 5.79609 5.90620 5.94960 6.14465 6.37937 6.43307 6.76493 6.84736 6.91734 7.14924 7.94992 8.39542 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.008387 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.047388 B = 3337.636565 C = 4993.317447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.701 5.701 3 C 0.061 3.939 4 C 0.156 3.844 5 N -0.726 5.726 6 C 0.297 3.703 7 N -0.541 5.541 8 C 0.019 3.981 9 C -0.068 4.068 10 C -0.198 4.198 11 C -0.147 4.147 12 C -0.004 4.004 13 C -0.481 4.481 14 H 0.081 0.919 15 C 0.033 3.967 16 N -0.833 5.833 17 Si 0.981 3.019 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.258 1.258 21 H 0.028 0.972 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.349 0.651 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 -5.712 -2.940 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.333 5.333 3 C -0.069 4.069 4 C 0.031 3.969 5 N -0.366 5.366 6 C 0.059 3.941 7 N -0.260 5.260 8 C -0.116 4.116 9 C -0.126 4.126 10 C -0.221 4.221 11 C -0.173 4.173 12 C -0.011 4.011 13 C -0.512 4.512 14 H 0.099 0.901 15 C -0.180 4.180 16 N -0.460 5.460 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.181 1.181 21 H 0.046 0.954 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.167 0.833 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.241 0.759 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.131 -6.679 -2.111 9.996 hybrid contribution -0.119 2.296 -0.825 2.443 sum -7.250 -4.383 -2.936 8.967 Atomic orbital electron populations 1.22249 0.86081 1.02975 1.00731 1.60256 1.09216 1.13116 1.50734 1.21957 0.93102 0.90711 1.01144 1.20767 0.92628 0.83507 1.00039 1.43679 1.01888 1.07202 1.83819 1.18690 0.85714 0.89055 1.00674 1.66521 1.04653 1.33978 1.20818 1.20812 0.89463 0.94824 1.06464 1.20343 0.96858 0.93481 1.01897 1.21481 0.99523 0.93353 1.07702 1.21373 0.93223 0.97804 1.04925 1.18272 0.93925 0.91814 0.97136 1.19381 1.00142 0.94518 1.37181 0.90079 1.26674 0.95886 1.03522 0.91950 1.69889 1.23624 1.28599 1.23857 0.85213 0.78529 0.76350 0.79730 1.18915 1.19609 1.18133 0.95357 0.89741 0.91783 0.83305 0.90806 0.94165 0.93979 0.94231 0.75880 0.91380 0.92247 0.90667 0.86461 0.87229 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.70 127.69 1.37 1.89 16 2 N -0.70 -16.48 6.86 -537.15 -3.68 -20.16 16 3 C 0.06 1.66 5.80 86.30 0.50 2.16 16 4 C 0.16 5.53 5.94 86.38 0.51 6.04 16 5 N -0.73 -30.92 5.61 -343.67 -1.93 -32.85 16 6 C 0.30 15.12 7.52 134.05 1.01 16.13 16 7 N -0.54 -26.86 9.44 -179.57 -1.70 -28.55 16 8 C 0.02 0.88 6.79 42.65 0.29 1.17 16 9 C -0.07 -2.40 10.15 71.24 0.72 -1.68 16 10 C -0.20 -9.60 9.69 22.32 0.22 -9.38 16 11 C -0.15 -7.94 8.79 22.89 0.20 -7.74 16 12 C 0.00 -0.24 5.60 -21.06 -0.12 -0.36 16 13 C -0.48 -25.10 8.52 23.37 0.20 -24.90 16 14 H 0.08 3.94 6.68 -2.91 -0.02 3.92 16 15 C 0.03 1.66 5.18 85.25 0.44 2.10 16 16 N -0.83 -43.69 10.96 21.83 0.24 -43.45 16 17 Si 0.98 37.64 29.59 68.60 2.03 39.67 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.35 7.38 8.81 -89.69 -0.79 6.59 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.40 16.38 6.67 -92.70 -0.62 15.76 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.11 6.13 6.26 -2.91 -0.02 6.11 16 35 H 0.29 13.61 8.30 -92.70 -0.77 12.84 16 Total: -1.00 -61.82 294.59 -0.01 -61.83 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -0.31 Total: 38.10 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.34 Total: -14.59 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -7.07 Total: -125.01 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -61.82 -0.01 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156897459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.999 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds