Wall clock time and date at job start Sun Mar 29 2020 21:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38603 * 120.72022 * 269.72089 * 3 2 1 5 5 N 1.32281 * 119.19317 * 179.78184 * 4 3 2 6 6 C 1.32492 * 120.74379 * 0.48198 * 5 4 3 7 7 N 1.38410 * 119.21822 * 179.75048 * 6 5 4 8 8 C 1.46489 * 119.99948 * 0.02562 * 7 6 5 9 9 C 1.53003 * 109.47241 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47410 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47424 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99734 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00570 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99634 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00467 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47030 * 89.99827 * 15 13 11 17 17 H 1.48503 * 109.47155 * 210.00162 * 15 13 11 18 18 H 1.48502 * 109.46846 * 329.99734 * 15 13 11 19 19 N 1.32495 * 121.56091 * 359.77064 * 6 5 4 20 20 C 1.32270 * 120.74385 * 359.97438 * 19 6 5 21 21 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 25 25 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 26 26 H 1.07999 * 120.40366 * 359.97438 * 4 3 2 27 27 H 0.97002 * 119.99756 * 180.02562 * 7 6 5 28 28 H 1.09005 * 109.47383 * 299.99654 * 8 7 6 29 29 H 1.08997 * 109.47480 * 59.99714 * 8 7 6 30 30 H 1.09003 * 109.47089 * 300.00159 * 9 8 7 31 31 H 1.08998 * 109.46828 * 59.99869 * 9 8 7 32 32 H 1.08993 * 109.47361 * 300.00104 * 10 9 8 33 33 H 1.09005 * 109.46684 * 60.00062 * 10 9 8 34 34 H 0.97003 * 119.99922 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.40182 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2739 2.0864 -1.1915 5 7 2.7105 3.3346 -1.1563 6 6 2.9257 3.9444 0.0001 7 7 3.3875 5.2492 0.0001 8 6 3.6320 5.9396 -1.2686 9 6 4.1345 7.3575 -0.9890 10 6 4.3905 8.0784 -2.3140 11 6 4.8849 9.4751 -2.0387 12 1 5.0049 9.8145 -1.0204 13 6 5.1839 10.3197 -3.0865 14 7 5.0373 9.9066 -4.3265 15 14 5.7974 12.0508 -2.7452 16 1 7.2796 12.0419 -2.6550 17 1 5.3739 12.9523 -3.8467 18 1 5.2263 12.5344 -1.4625 19 7 2.7096 3.3348 1.1564 20 6 2.2683 2.0883 1.1916 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.1048 1.5930 -2.1372 27 1 3.5493 5.7064 0.8402 28 1 4.3832 5.3945 -1.8401 29 1 2.7053 5.9883 -1.8403 30 1 3.3837 7.9030 -0.4173 31 1 5.0614 7.3083 -0.4176 32 1 5.1415 7.5329 -2.8853 33 1 3.4638 8.1275 -2.8858 34 1 5.2473 10.5009 -5.0638 35 1 2.0945 1.5966 2.1373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:32 Heat of formation + Delta-G solvation = 8.711582 kcal Electronic energy + Delta-G solvation = -15434.579037 eV Core-core repulsion = 12852.077160 eV Total energy + Delta-G solvation = -2582.501876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90708 -37.94724 -35.93774 -34.88153 -34.56270 -33.02335 -30.11606 -28.21157 -25.80109 -25.25733 -24.08659 -22.30437 -22.14858 -19.05279 -18.72059 -18.26118 -16.66037 -16.52454 -16.07064 -15.75806 -15.57129 -15.31646 -14.64285 -14.28890 -14.23504 -13.90626 -13.71675 -13.42853 -12.83880 -12.75233 -12.55269 -12.37155 -11.89626 -11.79166 -11.76749 -11.60374 -11.45400 -11.20894 -11.02594 -10.56090 -10.00655 -8.91523 -8.20616 -6.31947 0.25273 0.29630 1.40645 1.42056 1.53107 1.94788 2.41437 2.94852 3.12930 3.33320 3.78530 3.87169 4.03805 4.08269 4.17504 4.21582 4.55124 4.61246 4.61758 4.82539 4.89520 4.94568 5.02805 5.14036 5.18658 5.36741 5.40894 5.48686 5.53649 5.69556 5.82524 5.83895 6.16876 6.22658 6.53997 6.84729 7.37264 7.40609 8.91493 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.073386 B = 0.003506 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.452814 B = 7985.016066 C = 8250.422245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.249 4.249 4 C 0.179 3.821 5 N -0.595 5.595 6 C 0.539 3.461 7 N -0.696 5.696 8 C 0.156 3.844 9 C -0.104 4.104 10 C 0.028 3.972 11 C -0.544 4.544 12 H 0.063 0.937 13 C -0.002 4.002 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.263 1.263 19 N -0.590 5.590 20 C 0.183 3.817 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.187 0.813 27 H 0.416 0.584 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.062 0.938 32 H -0.005 1.005 33 H -0.005 1.005 34 H 0.264 0.736 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -20.131 10.212 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.257 4.257 4 C 0.012 3.988 5 N -0.319 5.319 6 C 0.182 3.818 7 N -0.333 5.333 8 C 0.032 3.968 9 C -0.142 4.142 10 C -0.010 4.010 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.791 3.209 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.187 1.187 19 N -0.313 5.313 20 C 0.016 3.984 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.204 0.796 27 H 0.254 0.746 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.133 -18.993 9.850 22.553 hybrid contribution 0.135 0.479 -0.055 0.500 sum -6.998 -18.515 9.795 22.084 Atomic orbital electron populations 1.21778 0.94668 1.02462 1.01541 1.20281 0.95844 0.89084 1.04400 1.21586 1.08439 1.01273 0.94370 1.23392 0.87792 0.87618 0.99966 1.67985 1.21798 1.13212 1.28877 1.19568 0.89226 0.87667 0.85342 1.44272 1.69940 1.09152 1.09959 1.21123 0.99634 0.91919 0.84126 1.21616 1.00555 0.92887 0.99170 1.18895 0.95144 0.94354 0.92558 1.21673 1.44204 0.99137 0.93159 0.91907 1.25999 0.95781 1.03324 0.94827 1.70106 1.49839 1.38098 0.99296 0.85422 0.78689 0.78654 0.78124 1.19763 1.20775 1.18682 1.67934 1.21958 1.13282 1.28117 1.23424 0.87572 0.87500 0.99861 0.93562 0.93128 0.90771 0.89258 0.89748 0.79614 0.74579 0.93023 0.93056 0.91949 0.91917 0.98672 0.98678 0.92726 0.78738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.06 -0.60 6.11 29.85 0.18 -0.42 16 3 C -0.25 -4.58 5.17 -19.69 -0.10 -4.68 16 4 C 0.18 4.15 11.00 84.71 0.93 5.08 16 5 N -0.60 -19.01 9.59 -197.98 -1.90 -20.91 16 6 C 0.54 17.63 8.43 261.48 2.20 19.83 16 7 N -0.70 -23.06 5.70 -351.05 -2.00 -25.06 16 8 C 0.16 5.83 5.65 86.38 0.49 6.31 16 9 C -0.10 -4.28 5.27 30.59 0.16 -4.12 16 10 C 0.03 1.50 4.97 29.85 0.15 1.65 16 11 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 12 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 14 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 15 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 N -0.59 -16.97 10.46 -197.98 -2.07 -19.04 16 20 C 0.18 3.81 11.00 84.71 0.93 4.74 16 21 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.09 0.66 8.10 -2.39 -0.02 0.64 16 25 H 0.08 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.42 12.46 8.59 -92.71 -0.80 11.67 16 28 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.37 302.18 2.96 -66.40 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.27 Total: 12.03 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 6.35 Total: -2.88 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.69 Total: -122.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.37 2.96 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.115 kcal (2) G-P(sol) polarization free energy of solvation -69.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds