Wall clock time and date at job start Sun Mar 29 2020 21:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38821 * 119.99048 * 2 1 4 4 C 1.38557 * 118.03881 * 179.97438 * 3 2 1 5 5 C 1.50706 * 121.04892 * 179.97438 * 4 3 2 6 6 C 1.39477 * 117.90691 * 0.02562 * 4 3 2 7 7 N 1.39048 * 120.15903 * 179.97438 * 6 4 3 8 8 C 1.46499 * 119.99905 * 179.72279 * 7 6 4 9 9 C 1.53004 * 109.47198 * 180.27813 * 8 7 6 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00298 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99907 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99860 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99926 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99781 * 15 13 11 19 19 N 1.32494 * 119.68272 * 0.27391 * 6 4 3 20 20 N 1.28352 * 122.07136 * 359.40002 * 19 6 4 21 21 H 1.09003 * 109.46653 * 90.00395 * 1 2 3 22 22 H 1.09003 * 109.46680 * 209.99834 * 1 2 3 23 23 H 1.08996 * 109.47365 * 329.99958 * 1 2 3 24 24 H 1.08000 * 120.97739 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.46958 * 270.02597 * 5 4 3 26 26 H 1.08999 * 109.46494 * 30.02288 * 5 4 3 27 27 H 1.08997 * 109.47148 * 150.02312 * 5 4 3 28 28 H 0.97001 * 120.00245 * 0.02562 * 7 6 4 29 29 H 1.09009 * 109.47454 * 300.27583 * 8 7 6 30 30 H 1.08998 * 109.47492 * 60.27877 * 8 7 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 32 32 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 33 33 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 34 34 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 35 35 H 0.96997 * 120.00401 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1552 0.0005 5 6 4.4065 2.4191 0.0000 6 6 4.1961 -0.0989 0.0005 7 7 5.5828 -0.2009 0.0005 8 6 6.2203 -1.5199 0.0066 9 6 7.7411 -1.3513 0.0123 10 6 8.4068 -2.7288 0.0193 11 6 9.9046 -2.5628 0.0242 12 1 10.3383 -1.5737 0.0229 13 6 10.7214 -3.6736 0.0304 14 7 12.0285 -3.5287 0.0352 15 14 9.9713 -5.3844 0.0319 16 1 9.7781 -5.8414 -1.3678 17 1 10.8802 -6.3228 0.7380 18 1 8.6593 -5.3490 0.7267 19 7 3.4483 -1.1926 -0.0055 20 7 2.1658 -1.1414 -0.0001 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6768 2.1466 -0.0004 25 1 4.6043 2.7233 -1.0278 26 1 3.8579 3.2087 0.5135 27 1 5.3507 2.2393 0.5139 28 1 6.1282 0.6014 0.0009 29 1 5.9123 -2.0683 0.8969 30 1 5.9195 -2.0730 -0.8831 31 1 8.0491 -0.8030 -0.8779 32 1 8.0420 -0.7982 0.9021 33 1 8.0988 -3.2768 0.9097 34 1 8.1059 -3.2824 -0.8703 35 1 12.6031 -4.3102 0.0399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:33 Heat of formation + Delta-G solvation = 36.595613 kcal Electronic energy + Delta-G solvation = -15693.911715 eV Core-core repulsion = 13112.618981 eV Total energy + Delta-G solvation = -2581.292734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01038 -36.92076 -34.55200 -33.98991 -32.64879 -31.15816 -28.36560 -27.73772 -26.57278 -23.93371 -22.22455 -21.76102 -20.29293 -17.71688 -17.39409 -16.67408 -15.58725 -15.10514 -14.75616 -14.64009 -14.18548 -13.69049 -13.60316 -13.04135 -13.02983 -12.82009 -12.67176 -12.34818 -12.23542 -11.89855 -11.08322 -11.01412 -10.95943 -10.43105 -10.01531 -9.88703 -9.80792 -9.70027 -9.45965 -9.22815 -8.55366 -7.82882 -6.06277 -4.05105 0.84409 1.22912 3.19084 3.32265 3.39735 3.44549 3.66114 4.19828 4.41592 4.44998 4.55940 4.71817 4.93563 5.12702 5.23147 5.26852 5.27967 5.41550 5.53177 5.57500 5.67902 5.75010 5.80238 5.96278 6.04979 6.18858 6.45622 6.49849 6.76377 7.14616 7.23533 7.36701 7.54215 7.76194 8.50187 8.97282 8.99717 9.56028 11.06970 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.004336 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.316954 B = 6456.196543 C = 7056.145451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.003 3.997 3 C -0.085 4.085 4 C -0.147 4.147 5 C -0.108 4.108 6 C 0.342 3.658 7 N -0.707 5.707 8 C 0.123 3.877 9 C -0.114 4.114 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.264 1.264 19 N -0.301 5.301 20 N -0.208 5.208 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.408 0.592 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.508 12.090 -0.070 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C -0.113 4.113 4 C -0.163 4.163 5 C -0.165 4.165 6 C 0.099 3.901 7 N -0.341 5.341 8 C 0.000 4.000 9 C -0.152 4.152 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 N -0.152 5.152 20 N -0.050 5.050 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.161 0.839 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.245 0.755 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.254 10.127 -0.070 22.645 hybrid contribution 0.122 0.962 -0.021 0.970 sum -20.132 11.088 -0.091 22.984 Atomic orbital electron populations 1.20483 0.88085 1.03266 1.02827 1.22507 0.98601 0.90390 1.03168 1.21879 0.93030 0.99499 0.96930 1.20588 0.94923 0.95242 1.05545 1.20658 0.99322 0.93556 1.02961 1.20023 0.87639 0.90735 0.91708 1.44820 1.00766 1.10175 1.78325 1.21672 0.93784 0.82589 1.01984 1.21709 0.90664 1.01210 1.01605 1.19490 0.96583 0.91995 0.96729 1.21098 0.88939 0.94890 1.51122 0.91062 1.25027 0.94705 0.99305 0.94430 1.69911 1.03036 1.30279 1.51027 0.86774 0.79622 0.84292 0.78626 1.20209 1.21357 1.18824 1.73056 0.99106 1.24284 1.18747 1.72678 1.00617 1.24831 1.06902 0.90789 0.90542 0.91039 0.83921 0.90434 0.90673 0.91112 0.75469 0.91802 0.91767 0.92211 0.92209 0.96242 0.96680 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.19 36.00 0.37 -0.34 16 2 C 0.00 0.04 6.87 -82.40 -0.57 -0.52 16 3 C -0.09 -0.87 9.58 -39.25 -0.38 -1.24 16 4 C -0.15 -1.68 5.95 -104.04 -0.62 -2.30 16 5 C -0.11 -0.85 9.65 36.01 0.35 -0.50 16 6 C 0.34 5.04 7.55 -154.77 -1.17 3.87 16 7 N -0.71 -10.09 5.63 -60.29 -0.34 -10.43 16 8 C 0.12 2.07 5.72 -4.04 -0.02 2.04 16 9 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 10 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 15 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 19 N -0.30 -5.15 10.74 31.23 0.34 -4.82 16 20 N -0.21 -3.28 11.41 33.61 0.38 -2.90 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 24 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 27 H 0.07 0.55 6.67 -51.93 -0.35 0.20 16 28 H 0.41 4.84 6.58 -40.82 -0.27 4.57 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 34 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -33.04 295.48 -6.98 -40.02 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.19 Total: -1.48 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.72 Total: -14.94 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 1.15 Total: -45.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.04 -6.98 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.612 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds