Wall clock time and date at job start Sun Mar 29 2020 21:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38821 * 119.99048 * 2 1 4 4 C 1.38557 * 118.03881 * 179.97438 * 3 2 1 5 5 C 1.50706 * 121.04892 * 179.97438 * 4 3 2 6 6 C 1.39477 * 117.90691 * 0.02562 * 4 3 2 7 7 N 1.39048 * 120.15903 * 179.97438 * 6 4 3 8 8 C 1.46499 * 119.99905 * 179.72279 * 7 6 4 9 9 C 1.53004 * 109.47198 * 180.27813 * 8 7 6 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46940 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00298 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99907 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47136 * 89.99860 * 15 13 11 17 17 H 1.48503 * 109.47098 * 209.99926 * 15 13 11 18 18 H 1.48504 * 109.46915 * 329.99781 * 15 13 11 19 19 N 1.32494 * 119.68272 * 0.27391 * 6 4 3 20 20 N 1.28352 * 122.07136 * 359.40002 * 19 6 4 21 21 H 1.09003 * 109.46653 * 90.00395 * 1 2 3 22 22 H 1.09003 * 109.46680 * 209.99834 * 1 2 3 23 23 H 1.08996 * 109.47365 * 329.99958 * 1 2 3 24 24 H 1.08000 * 120.97739 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.46958 * 270.02597 * 5 4 3 26 26 H 1.08999 * 109.46494 * 30.02288 * 5 4 3 27 27 H 1.08997 * 109.47148 * 150.02312 * 5 4 3 28 28 H 0.97001 * 120.00245 * 0.02562 * 7 6 4 29 29 H 1.09009 * 109.47454 * 300.27583 * 8 7 6 30 30 H 1.08998 * 109.47492 * 60.27877 * 8 7 6 31 31 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 32 32 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 33 33 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 34 34 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 35 35 H 0.96997 * 120.00401 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1552 0.0005 5 6 4.4065 2.4191 0.0000 6 6 4.1961 -0.0989 0.0005 7 7 5.5828 -0.2009 0.0005 8 6 6.2203 -1.5199 0.0066 9 6 7.7411 -1.3513 0.0123 10 6 8.4068 -2.7288 0.0193 11 6 9.9046 -2.5628 0.0242 12 1 10.3383 -1.5737 0.0229 13 6 10.7214 -3.6736 0.0304 14 7 12.0285 -3.5287 0.0352 15 14 9.9713 -5.3844 0.0319 16 1 9.7781 -5.8414 -1.3678 17 1 10.8802 -6.3228 0.7380 18 1 8.6593 -5.3490 0.7267 19 7 3.4483 -1.1926 -0.0055 20 7 2.1658 -1.1414 -0.0001 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6768 2.1466 -0.0004 25 1 4.6043 2.7233 -1.0278 26 1 3.8579 3.2087 0.5135 27 1 5.3507 2.2393 0.5139 28 1 6.1282 0.6014 0.0009 29 1 5.9123 -2.0683 0.8969 30 1 5.9195 -2.0730 -0.8831 31 1 8.0491 -0.8030 -0.8779 32 1 8.0420 -0.7982 0.9021 33 1 8.0988 -3.2768 0.9097 34 1 8.1059 -3.2824 -0.8703 35 1 12.6031 -4.3102 0.0399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637937.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:33 Heat of formation + Delta-G solvation = 14.741565 kcal Electronic energy + Delta-G solvation = -15694.859378 eV Core-core repulsion = 13112.618981 eV Total energy + Delta-G solvation = -2582.240397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.97526 -38.11677 -35.93227 -35.12175 -34.24811 -32.65575 -29.46053 -28.80007 -27.74527 -25.30761 -23.56856 -22.75299 -21.92048 -19.07805 -18.52605 -18.43018 -16.71733 -16.40560 -15.96148 -15.93074 -15.61374 -14.89449 -14.57915 -14.35185 -14.01349 -13.81186 -13.75505 -13.48378 -13.41223 -13.02221 -12.79484 -12.69056 -12.02128 -11.90066 -11.74211 -11.64084 -11.34877 -11.29591 -10.77725 -10.70150 -10.42253 -8.91483 -8.31102 -6.35123 -0.04340 0.29402 1.35972 1.37503 1.49730 2.11682 2.35237 2.69351 3.04626 3.32456 3.65492 3.69034 3.91922 4.10457 4.18733 4.19289 4.45036 4.50087 4.56849 4.72775 4.84911 4.88383 4.90023 4.97812 5.00969 5.03354 5.18805 5.21104 5.40819 5.49408 5.53498 5.62598 6.00197 6.25798 6.55282 6.72627 7.29860 8.00631 8.85379 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.004336 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.316954 B = 6456.196543 C = 7056.145451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.006 3.994 3 C -0.081 4.081 4 C -0.142 4.142 5 C -0.107 4.107 6 C 0.320 3.680 7 N -0.707 5.707 8 C 0.142 3.858 9 C -0.100 4.100 10 C -0.010 4.010 11 C -0.532 4.532 12 H 0.037 0.963 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.249 1.249 19 N -0.349 5.349 20 N -0.256 5.256 21 H 0.087 0.913 22 H 0.069 0.931 23 H 0.103 0.897 24 H 0.189 0.811 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.418 0.582 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.059 13.475 -0.092 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.157 4.157 5 C -0.164 4.164 6 C 0.076 3.924 7 N -0.343 5.343 8 C 0.017 3.983 9 C -0.138 4.138 10 C -0.048 4.048 11 C -0.570 4.570 12 H 0.056 0.944 13 C -0.191 4.191 14 N -0.591 5.591 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.173 1.173 19 N -0.199 5.199 20 N -0.097 5.097 21 H 0.105 0.895 22 H 0.088 0.912 23 H 0.122 0.878 24 H 0.207 0.793 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.841 11.521 -0.093 25.582 hybrid contribution 0.843 0.688 -0.018 1.088 sum -21.998 12.209 -0.111 25.159 Atomic orbital electron populations 1.20635 0.85326 1.04547 1.04027 1.23251 1.00496 0.90246 1.00553 1.22401 0.92604 1.00674 0.95167 1.21028 0.95923 0.95165 1.03619 1.20776 0.99097 0.92412 1.04092 1.20268 0.87413 0.91900 0.92772 1.44521 1.01016 1.09338 1.79443 1.21204 0.92127 0.83980 1.00945 1.21473 0.91877 0.98552 1.01903 1.19443 0.93783 0.94831 0.96769 1.21460 0.91610 0.93532 1.50364 0.94442 1.25974 0.95055 1.03955 0.94146 1.70053 1.04672 1.31707 1.52650 0.85701 0.79272 0.78739 0.79234 1.19175 1.20850 1.17276 1.72884 1.00154 1.26206 1.20620 1.72587 1.00366 1.27123 1.09603 0.89468 0.91221 0.87817 0.79349 0.89218 0.88020 0.91185 0.74209 0.92966 0.92846 0.91902 0.91947 0.96146 0.96251 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.19 71.24 0.73 -0.41 16 2 C 0.01 0.14 6.87 42.70 0.29 0.43 16 3 C -0.08 -1.36 9.58 22.49 0.22 -1.15 16 4 C -0.14 -2.89 5.95 -19.49 -0.12 -3.00 16 5 C -0.11 -1.32 9.65 71.24 0.69 -0.63 16 6 C 0.32 9.22 7.55 133.10 1.00 10.23 16 7 N -0.71 -19.78 5.63 -344.65 -1.94 -21.73 16 8 C 0.14 4.77 5.72 86.38 0.49 5.27 16 9 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 10 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 11 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 12 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 13 C 0.01 0.33 5.47 84.65 0.46 0.79 16 14 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 15 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 19 N -0.35 -12.10 10.74 -55.10 -0.59 -12.69 16 20 N -0.26 -8.07 11.41 -47.57 -0.54 -8.61 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.10 0.69 8.09 -2.39 -0.02 0.67 16 24 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.74 8.11 -2.39 -0.02 0.72 16 27 H 0.07 0.90 6.67 -2.39 -0.02 0.88 16 28 H 0.42 9.50 6.58 -92.71 -0.61 8.89 16 29 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.25 295.48 3.82 -70.44 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.41 Total: 8.16 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 4.30 Total: -22.93 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -2.78 Total: -102.71 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -74.25 3.82 -70.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637937.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.179 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds