Wall clock time and date at job start Sun Mar 29 2020 21:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47455 * 2 1 4 4 N 1.31950 * 120.05746 * 90.00028 * 3 2 1 5 5 C 1.32238 * 120.09199 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.18989 * 359.97438 * 5 4 3 7 7 N 1.32221 * 120.10257 * 359.97438 * 6 5 4 8 8 C 1.32680 * 119.91424 * 0.02562 * 7 6 5 9 9 N 1.38996 * 120.09582 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00036 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46910 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47015 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00551 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99660 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99617 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46812 * 89.99810 * 17 15 13 19 19 H 1.48493 * 109.47022 * 209.99636 * 17 15 13 20 20 H 1.48499 * 109.47419 * 329.99723 * 17 15 13 21 21 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47226 * 299.99885 * 1 2 3 23 23 H 1.09002 * 109.47522 * 59.99940 * 1 2 3 24 24 H 1.09001 * 109.47239 * 239.99647 * 2 1 3 25 25 H 1.09002 * 109.47522 * 120.00060 * 2 1 3 26 26 H 1.08001 * 119.91010 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.95169 * 179.72187 * 6 5 4 28 28 H 0.97001 * 120.00308 * 180.02562 * 9 8 7 29 29 H 1.08995 * 109.46952 * 300.00375 * 10 9 8 30 30 H 1.08997 * 109.46928 * 60.00293 * 10 9 8 31 31 H 1.08995 * 109.47845 * 300.00105 * 11 10 9 32 32 H 1.09005 * 109.46710 * 60.00803 * 11 10 9 33 33 H 1.08999 * 109.47636 * 300.00748 * 12 11 10 34 34 H 1.09005 * 109.46609 * 60.00960 * 12 11 10 35 35 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2527 2.0438 1.1421 5 6 2.6940 3.2903 1.1429 6 6 2.9270 3.9459 -0.0513 7 7 2.7097 3.3284 -1.2001 8 6 2.2669 2.0777 -1.2057 9 7 2.0367 1.4252 -2.4112 10 6 2.2836 2.1183 -3.6781 11 6 1.9540 1.1833 -4.8435 12 6 2.2112 1.9074 -6.1666 13 6 1.8859 0.9868 -7.3145 14 1 1.5316 -0.0147 -7.1199 15 6 2.0417 1.4227 -8.6133 16 7 2.4736 2.6420 -8.8503 17 14 1.6392 0.2813 -10.0362 18 1 0.2127 0.4461 -10.4146 19 1 2.5013 0.6156 -11.1981 20 1 1.8835 -1.1252 -9.6270 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8738 3.7974 2.0793 27 1 3.2831 4.9655 -0.0462 28 1 1.7126 0.5109 -2.4137 29 1 1.6543 3.0064 -3.7350 30 1 3.3319 2.4116 -3.7335 31 1 2.5836 0.2955 -4.7864 32 1 0.9057 0.8897 -4.7883 33 1 1.5813 2.7951 -6.2235 34 1 3.2594 2.2014 -6.2220 35 1 2.5828 2.9488 -9.7640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:27 Heat of formation + Delta-G solvation = 25.333357 kcal Electronic energy + Delta-G solvation = -15819.558949 eV Core-core repulsion = 13237.777847 eV Total energy + Delta-G solvation = -2581.781102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01066 -36.66489 -34.98479 -33.96901 -32.52255 -31.14799 -29.24597 -26.61362 -25.11615 -23.73807 -22.24587 -21.79483 -20.47368 -17.90094 -17.22298 -16.28361 -16.05719 -15.31654 -14.71769 -14.53244 -14.34619 -14.03445 -13.98734 -13.26337 -12.53623 -12.31222 -12.18498 -11.84953 -11.63579 -11.36030 -11.21156 -11.08479 -10.85975 -10.72001 -10.59031 -10.09231 -9.71453 -9.53973 -9.16215 -8.89738 -8.39111 -7.65384 -6.03774 -4.06843 1.02750 1.42010 3.25706 3.29594 3.36113 3.39120 3.86459 4.20536 4.41231 4.47370 4.54610 4.98753 5.07551 5.20390 5.26822 5.32189 5.37762 5.63843 5.68646 5.75040 5.76791 5.91504 6.07326 6.14962 6.28270 6.58218 6.66756 6.93007 7.16277 7.23411 7.61164 7.73643 7.75443 7.94856 8.13299 8.36142 8.99706 9.57488 11.07514 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040514 B = 0.004359 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.951753 B = 6422.269917 C = 7012.341658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C 0.015 3.985 4 N -0.405 5.405 5 C -0.036 4.036 6 C 0.101 3.899 7 N -0.500 5.500 8 C 0.367 3.633 9 N -0.707 5.707 10 C 0.126 3.874 11 C -0.122 4.122 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.408 0.592 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -1.738 18.205 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 C -0.136 4.136 4 N -0.119 5.119 5 C -0.196 4.196 6 C -0.060 4.060 7 N -0.224 5.224 8 C 0.126 3.874 9 N -0.338 5.338 10 C 0.003 3.997 11 C -0.160 4.160 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.178 0.822 27 H 0.182 0.818 28 H 0.246 0.754 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.106 -1.491 17.854 17.951 hybrid contribution -0.227 -0.657 -0.871 1.115 sum -1.333 -2.147 16.983 17.170 Atomic orbital electron populations 1.21737 0.94213 1.02099 1.02411 1.20278 0.96416 0.90224 1.03289 1.21517 1.05588 0.98577 0.87955 1.67958 1.06800 1.08899 1.28223 1.23184 1.04739 0.92324 0.99368 1.23448 0.94252 1.00358 0.87939 1.68085 1.16504 1.07797 1.29977 1.19260 0.90960 0.89667 0.87506 1.45044 1.69853 1.16193 1.02750 1.21635 1.01081 0.96012 0.80994 1.21904 1.00516 0.98259 0.95365 1.19013 0.97380 0.95674 0.89157 1.21205 1.44511 0.99462 0.90947 0.92659 1.25024 0.95209 0.95149 0.99021 1.69962 1.46271 1.16726 1.20323 0.86583 0.78274 0.81083 0.81997 1.20643 1.21186 1.19878 0.91825 0.92315 0.92536 0.90697 0.89822 0.82225 0.81836 0.75360 0.91910 0.91934 0.92781 0.92777 0.96286 0.96281 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.06 -0.66 5.81 -27.89 -0.16 -0.83 16 3 C 0.01 0.19 6.07 -82.15 -0.50 -0.30 16 4 N -0.41 -5.45 10.41 -9.12 -0.09 -5.55 16 5 C -0.04 -0.42 11.21 -17.39 -0.19 -0.61 16 6 C 0.10 1.23 11.22 -17.40 -0.20 1.03 16 7 N -0.50 -7.76 9.73 -12.24 -0.12 -7.88 16 8 C 0.37 5.50 7.46 -154.72 -1.15 4.35 16 9 N -0.71 -10.38 5.61 -60.31 -0.34 -10.72 16 10 C 0.13 2.18 5.71 -4.04 -0.02 2.16 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 12 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.41 5.14 6.47 -40.82 -0.26 4.88 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -31.52 298.70 -8.11 -39.62 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.22 Total: 0.19 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.55 Total: -10.60 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.18 Total: -50.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.52 -8.11 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.957 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds