Wall clock time and date at job start Sun Mar 29 2020 21:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47455 * 2 1 4 4 N 1.31950 * 120.05746 * 90.00028 * 3 2 1 5 5 C 1.32238 * 120.09199 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.18989 * 359.97438 * 5 4 3 7 7 N 1.32221 * 120.10257 * 359.97438 * 6 5 4 8 8 C 1.32680 * 119.91424 * 0.02562 * 7 6 5 9 9 N 1.38996 * 120.09582 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00036 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.46910 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47015 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00551 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99660 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99617 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46812 * 89.99810 * 17 15 13 19 19 H 1.48493 * 109.47022 * 209.99636 * 17 15 13 20 20 H 1.48499 * 109.47419 * 329.99723 * 17 15 13 21 21 H 1.08996 * 109.47217 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47226 * 299.99885 * 1 2 3 23 23 H 1.09002 * 109.47522 * 59.99940 * 1 2 3 24 24 H 1.09001 * 109.47239 * 239.99647 * 2 1 3 25 25 H 1.09002 * 109.47522 * 120.00060 * 2 1 3 26 26 H 1.08001 * 119.91010 * 180.02562 * 5 4 3 27 27 H 1.08000 * 119.95169 * 179.72187 * 6 5 4 28 28 H 0.97001 * 120.00308 * 180.02562 * 9 8 7 29 29 H 1.08995 * 109.46952 * 300.00375 * 10 9 8 30 30 H 1.08997 * 109.46928 * 60.00293 * 10 9 8 31 31 H 1.08995 * 109.47845 * 300.00105 * 11 10 9 32 32 H 1.09005 * 109.46710 * 60.00803 * 11 10 9 33 33 H 1.08999 * 109.47636 * 300.00748 * 12 11 10 34 34 H 1.09005 * 109.46609 * 60.00960 * 12 11 10 35 35 H 0.97005 * 119.99717 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2527 2.0438 1.1421 5 6 2.6940 3.2903 1.1429 6 6 2.9270 3.9459 -0.0513 7 7 2.7097 3.3284 -1.2001 8 6 2.2669 2.0777 -1.2057 9 7 2.0367 1.4252 -2.4112 10 6 2.2836 2.1183 -3.6781 11 6 1.9540 1.1833 -4.8435 12 6 2.2112 1.9074 -6.1666 13 6 1.8859 0.9868 -7.3145 14 1 1.5316 -0.0147 -7.1199 15 6 2.0417 1.4227 -8.6133 16 7 2.4736 2.6420 -8.8503 17 14 1.6392 0.2813 -10.0362 18 1 0.2127 0.4461 -10.4146 19 1 2.5013 0.6156 -11.1981 20 1 1.8835 -1.1252 -9.6270 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8738 3.7974 2.0793 27 1 3.2831 4.9655 -0.0462 28 1 1.7126 0.5109 -2.4137 29 1 1.6543 3.0064 -3.7350 30 1 3.3319 2.4116 -3.7335 31 1 2.5836 0.2955 -4.7864 32 1 0.9057 0.8897 -4.7883 33 1 1.5813 2.7951 -6.2235 34 1 3.2594 2.2014 -6.2220 35 1 2.5828 2.9488 -9.7640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:26 Heat of formation + Delta-G solvation = 5.430043 kcal Electronic energy + Delta-G solvation = -15820.422022 eV Core-core repulsion = 13237.777847 eV Total energy + Delta-G solvation = -2582.644175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02234 -37.94382 -35.94640 -35.69078 -34.04372 -32.55102 -30.41580 -28.28621 -26.12847 -25.23254 -23.58457 -22.76929 -22.12388 -19.04649 -18.52742 -18.17504 -16.95905 -16.55756 -16.50692 -15.83662 -15.63127 -15.21621 -14.82213 -14.29446 -14.14011 -13.85827 -13.69146 -13.30557 -12.82225 -12.60282 -12.46522 -12.42597 -12.27248 -12.22751 -11.95037 -11.66108 -11.50531 -11.20559 -10.99818 -10.55797 -9.93435 -8.73933 -8.20089 -6.31486 0.05184 0.38572 1.41492 1.42653 1.53662 2.12952 2.42133 2.87464 3.13761 3.33170 3.45922 3.57708 4.10608 4.17977 4.22610 4.27281 4.41840 4.43455 4.50676 4.56907 4.84776 4.95569 4.98937 5.01848 5.12570 5.15476 5.29971 5.43135 5.50921 5.70010 5.83272 6.00060 6.15527 6.23258 6.74800 6.85590 7.11122 7.38130 8.91970 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040514 B = 0.004359 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.951753 B = 6422.269917 C = 7012.341658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C 0.012 3.988 4 N -0.422 5.422 5 C -0.026 4.026 6 C 0.092 3.908 7 N -0.534 5.534 8 C 0.345 3.655 9 N -0.705 5.705 10 C 0.147 3.853 11 C -0.104 4.104 12 C 0.027 3.973 13 C -0.543 4.543 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.261 1.261 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.197 0.803 27 H 0.196 0.804 28 H 0.418 0.582 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.064 0.936 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -2.987 19.289 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.138 4.138 4 N -0.136 5.136 5 C -0.186 4.186 6 C -0.068 4.068 7 N -0.258 5.258 8 C 0.105 3.895 9 N -0.339 5.339 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.011 4.011 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.214 0.786 27 H 0.212 0.788 28 H 0.258 0.742 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.532 -2.763 18.978 19.239 hybrid contribution -0.061 -0.162 -1.080 1.094 sum -1.593 -2.925 17.898 18.206 Atomic orbital electron populations 1.21697 0.93517 1.03180 1.01519 1.20377 0.96905 0.88717 1.04162 1.21867 1.04935 0.99648 0.87314 1.68068 1.07567 1.09861 1.28120 1.23820 1.02420 0.91709 1.00658 1.24019 0.93828 1.01635 0.87289 1.68052 1.17237 1.08520 1.31999 1.19432 0.92187 0.90008 0.87840 1.44708 1.70931 1.16542 1.01765 1.21126 0.99747 0.95101 0.81773 1.21609 1.01310 0.98146 0.93159 1.18910 0.95086 0.95076 0.92038 1.21679 1.44253 1.00160 0.91961 0.91728 1.25998 0.94954 0.96750 1.02208 1.70104 1.47469 1.18776 1.21075 0.85430 0.78192 0.79246 0.78075 1.19812 1.20949 1.18517 0.89760 0.92982 0.93589 0.89716 0.88990 0.78639 0.78755 0.74217 0.93412 0.93413 0.91751 0.91745 0.98892 0.98880 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.89 71.98 0.71 -1.77 16 2 C -0.06 -1.22 5.81 29.84 0.17 -1.04 16 3 C 0.01 0.30 6.07 42.79 0.26 0.56 16 4 N -0.42 -10.61 10.41 -182.77 -1.90 -12.51 16 5 C -0.03 -0.54 11.21 84.62 0.95 0.41 16 6 C 0.09 2.10 11.22 84.63 0.95 3.05 16 7 N -0.53 -16.37 9.73 -192.64 -1.88 -18.24 16 8 C 0.35 10.16 7.46 133.02 0.99 11.16 16 9 N -0.70 -20.46 5.61 -344.72 -1.93 -22.40 16 10 C 0.15 5.19 5.71 86.38 0.49 5.68 16 11 C -0.10 -4.08 5.27 30.60 0.16 -3.92 16 12 C 0.03 1.38 4.97 29.85 0.15 1.53 16 13 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 16 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 17 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 1.45 6.56 -2.39 -0.02 1.43 16 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.42 10.11 6.47 -92.71 -0.60 9.51 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 35 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -68.31 298.70 2.60 -65.70 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.47 Total: 12.33 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.53 Total: -14.08 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -5.43 Total: -109.74 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.31 2.60 -65.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.135 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds