Wall clock time and date at job start Sun Mar 29 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46883 * 2 1 4 4 C 1.38817 * 119.98894 * 124.97948 * 3 2 1 5 5 C 1.38572 * 118.03354 * 179.70501 * 4 3 2 6 6 C 1.39474 * 117.90351 * 0.56762 * 5 4 3 7 7 N 1.39050 * 120.15544 * 179.71567 * 6 5 4 8 8 C 1.46499 * 119.99939 * 359.72770 * 7 6 5 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47116 * 59.99479 * 15 13 11 17 17 H 1.48490 * 109.47381 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46756 * 300.00079 * 15 13 11 19 19 N 1.32490 * 119.68819 * 359.44257 * 6 5 4 20 20 N 1.28348 * 122.06950 * 0.27351 * 19 6 5 21 21 H 1.09003 * 109.47149 * 60.00096 * 1 2 3 22 22 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47152 * 299.99985 * 1 2 3 24 24 H 1.09003 * 109.47091 * 240.00413 * 2 1 3 25 25 H 1.08994 * 109.47378 * 120.00038 * 2 1 3 26 26 H 1.07998 * 120.98482 * 359.97438 * 4 3 2 27 27 H 1.07997 * 121.04425 * 180.28871 * 5 4 3 28 28 H 0.97000 * 119.99640 * 179.72122 * 7 6 5 29 29 H 1.09002 * 109.47391 * 59.99794 * 8 7 6 30 30 H 1.09001 * 109.46813 * 299.99850 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 33 33 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 34 34 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 35 35 H 0.97000 * 119.99425 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9134 1.8453 0.9851 5 6 3.3543 3.1584 0.9428 6 6 2.8750 3.9751 -0.0812 7 7 3.2820 5.3021 -0.1647 8 6 4.2118 5.8469 0.8278 9 6 4.4940 7.3166 0.5093 10 6 5.4654 7.8854 1.5455 11 6 5.7439 9.3328 1.2316 12 1 5.2752 9.8001 0.3781 13 6 6.5970 10.0605 2.0338 14 7 7.1674 9.4915 3.0734 15 14 6.9417 11.8548 1.6451 16 1 5.6710 12.6225 1.6834 17 1 7.8846 12.4069 2.6506 18 1 7.5437 11.9613 0.2918 19 7 2.0343 3.4792 -0.9771 20 7 1.6346 2.2603 -0.9351 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.2488 1.1710 1.7591 27 1 4.0437 3.5385 1.6821 28 1 2.9504 5.8670 -0.8801 29 1 5.1443 5.2832 0.8000 30 1 3.7696 5.7691 1.8210 31 1 4.9360 7.3948 -0.4839 32 1 3.5614 7.8800 0.5374 33 1 5.0239 7.8073 2.5389 34 1 6.3981 7.3219 1.5170 35 1 7.7673 10.0036 3.6380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:53 Heat of formation + Delta-G solvation = 13.211923 kcal Electronic energy + Delta-G solvation = -15422.528288 eV Core-core repulsion = 12840.221561 eV Total energy + Delta-G solvation = -2582.306727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91229 -38.17453 -35.94568 -35.13661 -33.77733 -32.84640 -30.52986 -28.18166 -26.24459 -25.03420 -24.21635 -22.64772 -21.94423 -18.95054 -18.53220 -18.05243 -16.69491 -16.54646 -16.48159 -15.84421 -15.71448 -14.90833 -14.85935 -14.38082 -14.23494 -13.86911 -13.73562 -13.21193 -12.81942 -12.73164 -12.56416 -12.38815 -12.12377 -11.86092 -11.76133 -11.47784 -11.34095 -11.22527 -11.03723 -10.55298 -10.44593 -8.95670 -8.21461 -6.31657 -0.04198 0.28003 1.40847 1.42650 1.50611 2.01996 2.41121 2.70981 3.12682 3.40388 3.70329 3.82093 3.83017 4.08909 4.18709 4.18980 4.42176 4.50817 4.55129 4.66154 4.87038 4.92335 4.94064 5.02929 5.10359 5.13971 5.25942 5.34785 5.47890 5.50183 5.70816 5.83197 5.98053 6.23798 6.53668 6.84750 7.37604 7.94458 8.90008 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.081591 B = 0.003445 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.093378 B = 8126.761601 C = 8376.680385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C 0.003 3.997 4 C -0.066 4.066 5 C -0.187 4.187 6 C 0.326 3.674 7 N -0.711 5.711 8 C 0.137 3.863 9 C -0.106 4.106 10 C 0.028 3.972 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.268 1.268 19 N -0.349 5.349 20 N -0.235 5.235 21 H 0.044 0.956 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.188 0.812 27 H 0.161 0.839 28 H 0.408 0.592 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 -17.834 -2.652 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.095 4.095 5 C -0.220 4.220 6 C 0.083 3.917 7 N -0.344 5.344 8 C 0.013 3.987 9 C -0.144 4.144 10 C -0.009 4.009 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.786 3.214 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.193 1.193 19 N -0.199 5.199 20 N -0.075 5.075 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.205 0.795 27 H 0.179 0.821 28 H 0.244 0.756 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.392 -17.431 -3.721 20.147 hybrid contribution 1.149 1.297 0.940 1.972 sum -8.243 -16.134 -2.782 18.330 Atomic orbital electron populations 1.21688 0.94438 1.02651 1.01427 1.20427 0.96636 0.87709 1.04769 1.23141 0.98210 0.99591 0.93913 1.22553 0.93356 0.95323 0.98229 1.22200 1.04311 0.95196 1.00337 1.20348 0.91532 0.87700 0.92093 1.44609 1.49713 1.07274 1.32784 1.21474 0.91821 0.94422 0.91020 1.21588 0.99817 0.92997 1.00001 1.18904 0.93662 0.94599 0.93784 1.21659 1.27108 0.97554 1.12083 0.92260 1.25915 0.95685 1.03138 0.94866 1.70066 1.31324 1.38515 1.17174 0.85558 0.78262 0.79461 0.78127 1.19320 1.20863 1.19325 1.72879 1.15109 1.07736 1.24224 1.72503 1.17646 0.96654 1.20679 0.93698 0.90123 0.93437 0.89644 0.87323 0.79523 0.82110 0.75602 0.91493 0.91525 0.92230 0.92234 0.98202 0.98196 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.77 71.98 0.70 -1.45 16 2 C -0.06 -0.81 6.35 29.85 0.19 -0.62 16 3 C 0.00 0.07 6.26 42.71 0.27 0.33 16 4 C -0.07 -1.27 9.81 22.49 0.22 -1.05 16 5 C -0.19 -4.48 9.42 22.65 0.21 -4.26 16 6 C 0.33 9.68 7.75 133.10 1.03 10.71 16 7 N -0.71 -20.76 5.73 -344.66 -1.97 -22.73 16 8 C 0.14 4.16 4.92 86.38 0.42 4.58 16 9 C -0.11 -3.96 5.27 30.59 0.16 -3.80 16 10 C 0.03 1.39 4.97 29.85 0.15 1.54 16 11 C -0.55 -30.03 9.11 25.60 0.23 -29.80 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 15 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 N -0.35 -11.50 11.54 -55.10 -0.64 -12.13 16 20 N -0.23 -7.05 11.05 -47.56 -0.53 -7.57 16 21 H 0.04 0.85 7.96 -2.39 -0.02 0.84 16 22 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 0.87 7.92 -2.39 -0.02 0.86 16 26 H 0.19 1.88 8.00 -2.91 -0.02 1.85 16 27 H 0.16 3.32 6.84 -2.91 -0.02 3.30 16 28 H 0.41 11.61 8.60 -92.71 -0.80 10.81 16 29 H 0.07 1.98 7.95 -2.39 -0.02 1.96 16 30 H 0.07 1.97 7.97 -2.39 -0.02 1.95 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -66.71 299.84 3.51 -63.20 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.28 Total: 11.83 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.06 Total: -23.23 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -2.85 Total: -97.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -66.71 3.51 -63.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.414 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds