Wall clock time and date at job start Sun Mar 29 2020 22:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 N 1.46901 * 109.47052 * 119.99990 * 2 1 3 5 5 C 1.53001 * 109.46972 * 239.99971 * 2 1 3 6 6 C 1.53007 * 109.46857 * 174.99787 * 5 2 1 7 7 N 1.46496 * 109.46766 * 179.97438 * 6 5 2 8 8 C 1.39088 * 119.99362 * 180.02562 * 7 6 5 9 9 C 1.38742 * 119.66267 * 0.02562 * 8 7 6 10 10 C 1.40778 * 118.66893 * 180.02562 * 9 8 7 11 11 C 1.41547 * 120.98884 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00585 * 23.17553 * 11 10 9 13 13 C 1.40033 * 119.99728 * 203.17595 * 11 10 9 14 14 N 1.30744 * 120.00047 * 17.30585 * 13 11 10 15 15 Si 1.86804 * 119.99977 * 197.30840 * 13 11 10 16 16 H 1.48505 * 109.47124 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47045 * 119.99650 * 15 13 11 18 18 H 1.48499 * 109.47252 * 240.00072 * 15 13 11 19 19 C 1.41184 * 118.01530 * 359.97438 * 10 9 8 20 20 C 1.36555 * 119.14777 * 0.02562 * 19 10 9 21 21 N 1.32097 * 121.26563 * 359.72396 * 20 19 10 22 22 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47115 * 300.00229 * 1 2 3 24 24 H 1.09001 * 109.47067 * 60.00118 * 1 2 3 25 25 H 1.00897 * 111.00086 * 59.99926 * 4 2 1 26 26 H 1.00900 * 110.99975 * 183.95414 * 4 2 1 27 27 H 1.08996 * 109.47209 * 294.99502 * 5 2 1 28 28 H 1.08996 * 109.47200 * 55.00520 * 5 2 1 29 29 H 1.08994 * 109.47274 * 300.00308 * 6 5 2 30 30 H 1.09006 * 109.46700 * 60.00315 * 6 5 2 31 31 H 0.96989 * 120.00556 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.66093 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99971 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.42333 * 179.97438 * 19 10 9 35 35 H 1.07996 * 119.36882 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0532 -1.3044 -2.5095 8 6 5.4164 -1.3418 -2.7831 9 6 6.3074 -0.7227 -1.9184 10 6 7.6825 -0.7729 -2.2157 11 6 8.6345 -0.1577 -1.3678 12 1 8.3955 0.0252 -0.3306 13 6 9.8861 0.2140 -1.8740 14 7 10.0658 0.3133 -3.1652 15 14 11.2990 0.5677 -0.7044 16 1 10.8400 0.3849 0.6961 17 1 12.4187 -0.3669 -0.9837 18 1 11.7617 1.9658 -0.8956 19 6 8.0837 -1.4553 -3.3847 20 6 7.1334 -2.0348 -4.1759 21 7 5.8511 -1.9726 -3.8645 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6961 -1.6479 1.2228 26 1 3.0262 -0.6501 1.2559 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9995 -1.0728 -0.4259 31 1 3.4260 -1.7358 -3.1105 32 1 5.9531 -0.2124 -1.0349 33 1 10.9329 0.5704 -3.5158 34 1 9.1287 -1.5175 -3.6503 35 1 7.4363 -2.5580 -5.0707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159773040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:55 Heat of formation + Delta-G solvation = 13.056560 kcal Electronic energy + Delta-G solvation = -15967.569130 eV Core-core repulsion = 13385.255666 eV Total energy + Delta-G solvation = -2582.313464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.55753 -37.33797 -34.79864 -33.71887 -30.62965 -29.91288 -29.05272 -27.06225 -25.88611 -23.24996 -21.35491 -20.64741 -20.45777 -17.62723 -16.31366 -15.87619 -15.25977 -14.98201 -14.95795 -14.22379 -14.03380 -13.68171 -13.35049 -12.94032 -12.53423 -12.36117 -12.26298 -11.96853 -11.52188 -11.36558 -11.19751 -11.03716 -10.91381 -10.79576 -10.27559 -9.81863 -9.42149 -8.95445 -8.79273 -7.96203 -7.90863 -6.84130 -6.46891 -4.55692 2.78489 3.03675 3.06732 3.09763 3.35343 3.87368 3.98706 4.51363 4.70710 4.79862 4.95629 5.15366 5.36437 5.44826 5.61490 5.69725 5.78926 5.92535 6.00897 6.05082 6.17180 6.22000 6.76930 6.90004 6.95435 7.00828 7.06813 7.27589 7.36272 7.56045 7.83564 8.04607 8.10504 8.44529 8.70532 8.83673 8.90617 9.77957 10.10759 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.005454 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.568103 B = 5132.850093 C = 5949.473280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.083 0.917 4 N -0.846 5.846 5 C -0.165 4.165 6 C 0.141 3.859 7 N -0.745 5.745 8 C 0.395 3.605 9 C -0.336 4.336 10 C 0.155 3.845 11 C -0.456 4.456 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.783 5.783 15 Si 0.910 3.090 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.273 1.273 19 C -0.246 4.246 20 C 0.115 3.885 21 N -0.625 5.625 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.338 0.662 26 H 0.345 0.655 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.388 0.612 32 H 0.096 0.904 33 H 0.281 0.719 34 H 0.123 0.877 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 -0.384 4.498 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.101 0.899 4 N -0.376 5.376 5 C -0.205 4.205 6 C 0.016 3.984 7 N -0.382 5.382 8 C 0.165 3.835 9 C -0.363 4.363 10 C 0.147 3.853 11 C -0.487 4.487 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.408 5.408 15 Si 0.734 3.266 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.270 4.270 20 C -0.034 4.034 21 N -0.349 5.349 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.159 0.841 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.622 -0.067 4.341 11.475 hybrid contribution 1.650 -0.161 -0.027 1.658 sum -8.972 -0.228 4.314 9.958 Atomic orbital electron populations 1.21788 0.94488 1.01854 1.01952 1.21383 0.95370 0.98408 0.87142 0.89885 1.58992 1.16936 1.21200 1.40480 1.22640 0.95928 1.01569 1.00385 1.21055 0.92225 0.96854 0.88310 1.44083 1.04096 1.62850 1.27187 1.17964 0.83637 0.91427 0.90493 1.21110 0.93364 1.16745 1.05043 1.17605 0.90629 0.86431 0.90628 1.19618 0.97117 1.34411 0.97560 0.90228 1.25973 0.99914 0.92747 0.95423 1.69816 1.24796 1.32800 1.13401 0.86244 0.80339 0.78606 0.81455 1.18283 1.19571 1.19876 1.21785 1.00104 1.05460 0.99682 1.21358 0.87762 0.96828 0.97450 1.66745 1.18495 1.28650 1.21008 0.92906 0.91919 0.92266 0.85000 0.84071 0.91624 0.90992 0.92782 0.93296 0.77818 0.88596 0.90756 0.85888 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.49 37.16 0.35 -0.91 16 2 C 0.09 0.92 3.41 -67.71 -0.23 0.69 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 N -0.85 -8.81 9.18 -4.67 -0.04 -8.85 16 5 C -0.17 -1.87 4.97 -26.73 -0.13 -2.01 16 6 C 0.14 2.14 4.66 -4.04 -0.02 2.13 16 7 N -0.75 -14.07 5.73 -60.47 -0.35 -14.42 16 8 C 0.40 9.46 7.65 -154.97 -1.19 8.27 16 9 C -0.34 -8.50 9.12 -38.44 -0.35 -8.85 16 10 C 0.16 4.23 5.61 -106.56 -0.60 3.63 16 11 C -0.46 -12.12 9.12 -37.65 -0.34 -12.47 16 12 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 13 C 0.08 1.97 5.20 -17.34 -0.09 1.88 16 14 N -0.78 -20.07 10.90 55.55 0.61 -19.47 16 15 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 19 C -0.25 -6.54 8.75 -39.07 -0.34 -6.88 16 20 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 21 N -0.63 -15.65 10.37 -12.82 -0.13 -15.78 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.34 3.17 9.00 -39.29 -0.35 2.82 16 26 H 0.35 3.73 7.55 -39.29 -0.30 3.44 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.05 0.75 6.65 -51.93 -0.35 0.41 16 31 H 0.39 6.79 8.60 -40.82 -0.35 6.44 16 32 H 0.10 2.27 6.71 -52.48 -0.35 1.92 16 33 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 34 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 35 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -28.99 291.88 -8.63 -37.62 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -4.94 Total: 15.01 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.14 Total: -11.84 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.08 Total: -58.51 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.99 -8.63 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159773040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.674 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds