Wall clock time and date at job start Sun Mar 29 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 N 1.46901 * 109.47052 * 119.99990 * 2 1 3 5 5 C 1.53001 * 109.46972 * 239.99971 * 2 1 3 6 6 C 1.53007 * 109.46857 * 174.99787 * 5 2 1 7 7 N 1.46496 * 109.46766 * 179.97438 * 6 5 2 8 8 C 1.39088 * 119.99362 * 180.02562 * 7 6 5 9 9 C 1.38742 * 119.66267 * 0.02562 * 8 7 6 10 10 C 1.40778 * 118.66893 * 180.02562 * 9 8 7 11 11 C 1.41547 * 120.98884 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00585 * 23.17553 * 11 10 9 13 13 C 1.40033 * 119.99728 * 203.17595 * 11 10 9 14 14 N 1.30744 * 120.00047 * 17.30585 * 13 11 10 15 15 Si 1.86804 * 119.99977 * 197.30840 * 13 11 10 16 16 H 1.48505 * 109.47124 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47045 * 119.99650 * 15 13 11 18 18 H 1.48499 * 109.47252 * 240.00072 * 15 13 11 19 19 C 1.41184 * 118.01530 * 359.97438 * 10 9 8 20 20 C 1.36555 * 119.14777 * 0.02562 * 19 10 9 21 21 N 1.32097 * 121.26563 * 359.72396 * 20 19 10 22 22 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47115 * 300.00229 * 1 2 3 24 24 H 1.09001 * 109.47067 * 60.00118 * 1 2 3 25 25 H 1.00897 * 111.00086 * 59.99926 * 4 2 1 26 26 H 1.00900 * 110.99975 * 183.95414 * 4 2 1 27 27 H 1.08996 * 109.47209 * 294.99502 * 5 2 1 28 28 H 1.08996 * 109.47200 * 55.00520 * 5 2 1 29 29 H 1.08994 * 109.47274 * 300.00308 * 6 5 2 30 30 H 1.09006 * 109.46700 * 60.00315 * 6 5 2 31 31 H 0.96989 * 120.00556 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.66093 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99971 * 180.02562 * 14 13 11 34 34 H 1.07999 * 120.42333 * 179.97438 * 19 10 9 35 35 H 1.07996 * 119.36882 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7213 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0532 -1.3044 -2.5095 8 6 5.4164 -1.3418 -2.7831 9 6 6.3074 -0.7227 -1.9184 10 6 7.6825 -0.7729 -2.2157 11 6 8.6345 -0.1577 -1.3678 12 1 8.3955 0.0252 -0.3306 13 6 9.8861 0.2140 -1.8740 14 7 10.0658 0.3133 -3.1652 15 14 11.2990 0.5677 -0.7044 16 1 10.8400 0.3849 0.6961 17 1 12.4187 -0.3669 -0.9837 18 1 11.7617 1.9658 -0.8956 19 6 8.0837 -1.4553 -3.3847 20 6 7.1334 -2.0348 -4.1759 21 7 5.8511 -1.9726 -3.8645 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6961 -1.6479 1.2228 26 1 3.0262 -0.6501 1.2559 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9995 -1.0728 -0.4259 31 1 3.4260 -1.7358 -3.1105 32 1 5.9531 -0.2124 -1.0349 33 1 10.9329 0.5704 -3.5158 34 1 9.1287 -1.5175 -3.6503 35 1 7.4363 -2.5580 -5.0707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159773040.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:54 Heat of formation + Delta-G solvation = -6.485993 kcal Electronic energy + Delta-G solvation = -15968.416559 eV Core-core repulsion = 13385.255666 eV Total energy + Delta-G solvation = -2583.160893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36944 -38.44805 -36.40991 -35.44199 -32.57766 -31.29617 -29.95851 -28.58522 -27.84644 -24.59671 -23.10661 -22.40800 -21.46557 -19.47621 -17.79739 -17.20162 -16.76539 -16.61988 -16.16829 -15.89329 -15.38561 -15.13968 -14.76684 -14.48843 -14.17141 -14.04385 -13.33896 -13.16120 -12.87326 -12.76132 -12.70944 -12.50975 -12.06319 -11.96597 -11.79262 -11.73724 -11.26402 -10.65926 -9.95048 -9.87322 -9.64979 -8.72030 -8.26830 -6.56744 0.95372 1.16497 1.39091 1.54498 1.59100 2.18772 2.49739 2.78985 3.68835 3.79057 3.82165 4.02145 4.16897 4.23063 4.48346 4.55852 4.58832 4.88480 4.90342 4.94352 4.99517 5.03036 5.06620 5.18673 5.28165 5.30137 5.34582 5.60320 5.89503 6.09864 6.24617 6.36517 6.53426 6.56562 6.85060 6.88927 7.02983 7.85826 8.25650 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.005454 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.568103 B = 5132.850093 C = 5949.473280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.076 0.924 4 N -0.850 5.850 5 C -0.150 4.150 6 C 0.139 3.861 7 N -0.733 5.733 8 C 0.394 3.606 9 C -0.356 4.356 10 C 0.127 3.873 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.039 3.961 14 N -0.811 5.811 15 Si 0.988 3.012 16 H -0.257 1.257 17 H -0.261 1.261 18 H -0.263 1.263 19 C -0.271 4.271 20 C 0.115 3.885 21 N -0.636 5.636 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.344 0.656 26 H 0.342 0.658 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.398 0.602 32 H 0.102 0.898 33 H 0.292 0.708 34 H 0.113 0.887 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 -0.281 5.137 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.094 0.906 4 N -0.380 5.380 5 C -0.190 4.190 6 C 0.014 3.986 7 N -0.369 5.369 8 C 0.162 3.838 9 C -0.383 4.383 10 C 0.119 3.881 11 C -0.518 4.518 12 H 0.097 0.903 13 C -0.178 4.178 14 N -0.436 5.436 15 Si 0.808 3.192 16 H -0.180 1.180 17 H -0.186 1.186 18 H -0.188 1.188 19 C -0.296 4.296 20 C -0.034 4.034 21 N -0.360 5.360 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.232 0.768 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.231 0.033 4.983 12.287 hybrid contribution 1.746 -0.186 -0.253 1.774 sum -9.485 -0.153 4.730 10.600 Atomic orbital electron populations 1.21752 0.92996 1.02453 1.02427 1.21388 0.96448 0.97825 0.86410 0.90565 1.59006 1.16701 1.21797 1.40514 1.22544 0.92658 1.02418 1.01334 1.21239 0.94919 0.95661 0.86741 1.44200 1.02306 1.62280 1.28159 1.18257 0.85551 0.90290 0.89745 1.21225 0.93198 1.17953 1.05963 1.18019 0.91816 0.86997 0.91302 1.19900 0.98599 1.35654 0.97670 0.90255 1.26881 1.01981 0.91829 0.97133 1.69852 1.26071 1.32542 1.15159 0.85081 0.76469 0.78886 0.78805 1.18041 1.18585 1.18773 1.21763 0.99974 1.07246 1.00627 1.21761 0.87696 0.96093 0.97871 1.66900 1.18355 1.29298 1.21495 0.92237 0.91957 0.91328 0.84242 0.84500 0.90727 0.90293 0.93896 0.93390 0.76764 0.87947 0.89679 0.86938 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.49 71.98 0.68 -1.44 16 2 C 0.09 1.72 3.41 44.92 0.15 1.87 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 N -0.85 -16.46 9.18 -168.67 -1.55 -18.01 16 5 C -0.15 -3.09 4.97 30.60 0.15 -2.94 16 6 C 0.14 4.09 4.66 86.38 0.40 4.49 16 7 N -0.73 -26.98 5.73 -345.23 -1.98 -28.96 16 8 C 0.39 18.82 7.65 132.90 1.02 19.84 16 9 C -0.36 -18.36 9.12 23.01 0.21 -18.15 16 10 C 0.13 7.08 5.61 -21.12 -0.12 6.97 16 11 C -0.49 -26.46 9.12 23.52 0.21 -26.24 16 12 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 13 C 0.04 1.95 5.20 85.29 0.44 2.40 16 14 N -0.81 -41.91 10.90 21.84 0.24 -41.67 16 15 Si 0.99 37.26 29.59 68.60 2.03 39.29 16 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 17 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 19 C -0.27 -14.77 8.75 22.60 0.20 -14.57 16 20 C 0.12 5.78 11.10 84.26 0.94 6.71 16 21 N -0.64 -31.66 10.37 -194.47 -2.02 -33.67 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.34 5.86 9.00 -89.70 -0.81 5.05 16 26 H 0.34 7.08 7.55 -89.69 -0.68 6.41 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.38 7.93 -2.39 -0.02 1.36 16 30 H 0.05 1.44 6.65 -2.38 -0.02 1.43 16 31 H 0.40 13.25 8.60 -92.72 -0.80 12.45 16 32 H 0.10 4.96 6.71 -2.91 -0.02 4.94 16 33 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 34 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 35 H 0.14 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -62.15 291.88 -0.15 -62.30 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -1.16 Total: 41.79 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.29 Total: -21.06 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.31 Total: -122.32 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -62.15 -0.15 -62.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159773040.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.811 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds