Wall clock time and date at job start Sun Mar 29 2020 21:57:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50708 * 109.47141 * 2 1
4 4 C 1.38605 * 120.72090 * 269.72587 * 3 2 1
5 5 N 1.32274 * 119.19306 * 179.71484 * 4 3 2
6 6 C 1.32496 * 120.74375 * 0.56734 * 5 4 3
7 7 N 1.38398 * 119.22077 * 179.72697 * 6 5 4
8 8 C 1.46502 * 119.99758 * 359.97438 * 7 6 5
9 9 H 1.09000 * 109.47074 * 35.00154 * 8 7 6
10 10 C 1.50701 * 109.47075 * 155.00160 * 8 7 6
11 11 H 1.08001 * 119.99881 * 359.97438 * 10 8 7
12 12 C 1.37879 * 120.00384 * 180.02562 * 10 8 7
13 13 N 1.31516 * 119.99749 * 359.97438 * 12 10 8
14 14 Si 1.86796 * 120.00219 * 179.97438 * 12 10 8
15 15 H 1.48500 * 109.47288 * 359.97438 * 14 12 10
16 16 H 1.48500 * 109.46823 * 119.99949 * 14 12 10
17 17 H 1.48505 * 109.47034 * 239.99858 * 14 12 10
18 18 C 1.52998 * 109.47152 * 274.99931 * 8 7 6
19 19 C 1.52998 * 109.47265 * 65.00296 * 18 8 7
20 20 N 1.32498 * 121.55990 * 359.70770 * 6 5 4
21 21 C 1.32273 * 120.74572 * 359.97438 * 20 6 5
22 22 H 1.09002 * 109.47153 * 299.99670 * 1 2 3
23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47261 * 59.99842 * 1 2 3
25 25 H 1.08996 * 109.47853 * 120.00301 * 2 1 3
26 26 H 1.09002 * 109.47153 * 240.00330 * 2 1 3
27 27 H 1.08001 * 120.39799 * 359.97438 * 4 3 2
28 28 H 0.97001 * 120.00254 * 179.97438 * 7 6 5
29 29 H 0.96995 * 120.00504 * 179.97438 * 13 12 10
30 30 H 1.09010 * 109.47007 * 184.99964 * 18 8 7
31 31 H 1.09000 * 109.47199 * 304.99970 * 18 8 7
32 32 H 1.08993 * 109.46994 * 299.99999 * 19 18 8
33 33 H 1.09000 * 109.47279 * 59.99723 * 19 18 8
34 34 H 1.08999 * 109.47317 * 179.97438 * 19 18 8
35 35 H 1.07999 * 120.40249 * 179.97438 * 21 20 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.2737 2.0866 -1.1915
5 7 2.7089 3.3352 -1.1563
6 6 2.9245 3.9449 0.0001
7 7 3.3854 5.2499 0.0002
8 6 3.6295 5.9406 -1.2686
9 1 2.8916 5.6207 -2.0042
10 6 3.5183 7.4289 -1.0598
11 1 3.2883 7.8211 -0.0802
12 6 3.7091 8.2899 -2.1197
13 7 3.9887 7.8123 -3.3128
14 14 3.5705 10.1347 -1.8611
15 1 3.2494 10.4123 -0.4380
16 1 4.8596 10.7821 -2.2137
17 1 2.4917 10.6761 -2.7262
18 6 5.0333 5.5999 -1.7728
19 6 5.1083 4.1079 -2.1032
20 7 2.7091 3.3350 1.1565
21 6 2.2679 2.0885 1.1916
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5139 -0.8900
25 1 1.8934 -0.5138 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 2.1045 1.5931 -2.1372
28 1 3.5467 5.7073 0.8402
29 1 4.1226 8.4179 -4.0585
30 1 5.2486 6.1818 -2.6691
31 1 5.7646 5.8382 -1.0005
32 1 4.8930 3.5260 -1.2071
33 1 4.3770 3.8695 -2.8756
34 1 6.1083 3.8652 -2.4629
35 1 2.0946 1.5966 2.1373
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161047900.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:57:40
Heat of formation + Delta-G solvation = 26.735084 kcal
Electronic energy + Delta-G solvation = -16564.957137 eV
Core-core repulsion = 13983.236818 eV
Total energy + Delta-G solvation = -2581.720319 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 235.138 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.80514 -38.13977 -35.62824 -34.46040 -34.13861 -32.59381 -30.12710 -28.39642
-25.55670 -25.16998 -24.36064 -22.37820 -21.51993 -19.51464 -18.31076 -17.94858
-16.75797 -16.29859 -15.89773 -15.49463 -15.32651 -14.61860 -14.54466 -14.27117
-14.12474 -13.61733 -13.40111 -13.17738 -12.84565 -12.70767 -12.68215 -12.20982
-12.08862 -11.81130 -11.68789 -11.44471 -11.37513 -11.11318 -10.81447 -10.44826
-9.77150 -8.58995 -8.16991 -6.33038 0.43263 0.47487 1.41858 1.43309
1.54930 2.25955 2.48668 3.10075 3.14727 3.53040 3.92421 4.05056
4.16029 4.17935 4.53956 4.58561 4.66405 4.68808 4.76934 4.94911
4.96174 5.10778 5.20213 5.27984 5.43461 5.46168 5.47761 5.55151
5.60693 5.81049 5.85029 6.08438 6.19754 6.42008 6.77431 6.93748
7.35186 7.66876 8.88193
Molecular weight = 235.14amu
Principal moments of inertia in cm(-1)
A = 0.042824 B = 0.005826 C = 0.005635
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.685587 B = 4805.219324 C = 4967.634384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.053 4.053
3 C -0.260 4.260
4 C 0.173 3.827
5 N -0.580 5.580
6 C 0.544 3.456
7 N -0.685 5.685
8 C 0.296 3.704
9 H 0.017 0.983
10 C -0.553 4.553
11 H 0.060 0.940
12 C 0.022 3.978
13 N -0.909 5.909
14 Si 0.967 3.033
15 H -0.268 1.268
16 H -0.276 1.276
17 H -0.280 1.280
18 C -0.121 4.121
19 C -0.113 4.113
20 N -0.602 5.602
21 C 0.180 3.820
22 H 0.048 0.952
23 H 0.074 0.926
24 H 0.043 0.957
25 H 0.087 0.913
26 H 0.081 0.919
27 H 0.180 0.820
28 H 0.403 0.597
29 H 0.266 0.734
30 H 0.075 0.925
31 H 0.025 0.975
32 H 0.030 0.970
33 H 0.046 0.954
34 H 0.038 0.962
35 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.850 -14.170 5.460 15.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.092 4.092
3 C -0.269 4.269
4 C 0.005 3.995
5 N -0.303 5.303
6 C 0.188 3.812
7 N -0.317 5.317
8 C 0.192 3.808
9 H 0.035 0.965
10 C -0.592 4.592
11 H 0.078 0.922
12 C -0.179 4.179
13 N -0.548 5.548
14 Si 0.792 3.208
15 H -0.193 1.193
16 H -0.202 1.202
17 H -0.206 1.206
18 C -0.160 4.160
19 C -0.170 4.170
20 N -0.325 5.325
21 C 0.013 3.987
22 H 0.067 0.933
23 H 0.093 0.907
24 H 0.062 0.938
25 H 0.105 0.895
26 H 0.100 0.900
27 H 0.197 0.803
28 H 0.238 0.762
29 H 0.075 0.925
30 H 0.093 0.907
31 H 0.044 0.956
32 H 0.049 0.951
33 H 0.065 0.935
34 H 0.057 0.943
35 H 0.208 0.792
Dipole moment (debyes) X Y Z Total
from point charges -3.427 -12.989 5.076 14.361
hybrid contribution -0.199 0.591 0.177 0.648
sum -3.626 -12.399 5.253 13.945
Atomic orbital electron populations
1.21767 0.94827 1.02309 1.01376 1.20226 0.95730 0.89182 1.04066
1.21471 1.09841 1.01269 0.94303 1.23342 0.88293 0.88163 0.99672
1.68211 1.20866 1.12640 1.28632 1.19629 0.88630 0.87847 0.85142
1.44847 1.67778 1.08481 1.10624 1.18379 0.92780 0.89494 0.80111
0.96520 1.21600 1.49778 0.91605 0.96186 0.92208 1.25651 0.94158
1.03486 0.94577 1.70020 1.47652 1.36336 1.00752 0.85378 0.77800
0.79310 0.78319 1.19251 1.20197 1.20579 1.21797 0.97904 0.95374
1.00921 1.21603 0.99057 0.96520 0.99834 1.67950 1.22884 1.13356
1.28359 1.23324 0.88105 0.87671 0.99640 0.93296 0.90678 0.93788
0.89457 0.89992 0.80285 0.76172 0.92468 0.90672 0.95574 0.95063
0.93479 0.94306 0.79175
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.19 9.89 71.98 0.71 -1.48 16
2 C -0.05 -0.85 6.11 29.85 0.18 -0.67 16
3 C -0.26 -6.54 5.17 -19.69 -0.10 -6.64 16
4 C 0.17 5.33 11.00 84.71 0.93 6.26 16
5 N -0.58 -23.65 6.37 -197.99 -1.26 -24.91 16
6 C 0.54 23.15 6.99 261.49 1.83 24.98 16
7 N -0.68 -31.74 5.15 -334.01 -1.72 -33.46 16
8 C 0.30 15.50 2.24 44.24 0.10 15.60 16
9 H 0.02 1.00 7.50 -2.39 -0.02 0.98 16
10 C -0.55 -30.49 8.73 25.60 0.22 -30.27 16
11 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16
12 C 0.02 1.19 5.29 84.65 0.45 1.64 16
13 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16
14 Si 0.97 43.08 29.54 68.60 2.03 45.11 16
15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16
16 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16
17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16
18 C -0.12 -6.05 5.45 30.59 0.17 -5.89 16
19 C -0.11 -4.95 8.43 71.98 0.61 -4.35 16
20 N -0.60 -22.40 10.46 -197.99 -2.07 -24.47 16
21 C 0.18 5.02 11.00 84.71 0.93 5.95 16
22 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
24 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16
25 H 0.09 1.08 8.10 -2.39 -0.02 1.07 16
26 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16
27 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16
28 H 0.40 17.83 8.65 -92.71 -0.80 17.03 16
29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16
30 H 0.07 4.15 5.95 -2.38 -0.01 4.14 16
31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.03 1.35 5.60 -2.39 -0.01 1.34 16
33 H 0.05 2.12 7.65 -2.39 -0.02 2.10 16
34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16
Total: -1.00 -63.86 288.87 3.52 -60.33
By element:
Atomic # 1 Polarization: 23.45 SS G_CDS: 0.28 Total: 23.73 kcal
Atomic # 6 Polarization: -0.90 SS G_CDS: 6.03 Total: 5.13 kcal
Atomic # 7 Polarization: -129.49 SS G_CDS: -4.81 Total: -134.30 kcal
Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal
Total: -63.86 3.52 -60.33 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161047900.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.068 kcal
(2) G-P(sol) polarization free energy of solvation -63.856 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds