Wall clock time and date at job start Sun Mar 29 2020 21:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47204 * 2 1 4 4 N 1.31947 * 120.05289 * 270.02382 * 3 2 1 5 5 C 1.32249 * 120.08695 * 179.97438 * 4 3 2 6 6 C 1.38208 * 120.18599 * 359.97438 * 5 4 3 7 7 N 1.32222 * 120.10489 * 359.78445 * 6 5 4 8 8 C 1.32676 * 119.91097 * 0.46952 * 7 6 5 9 9 N 1.39004 * 120.09191 * 179.78964 * 8 7 6 10 10 C 1.46502 * 120.00178 * 359.72001 * 9 8 7 11 11 H 1.09001 * 109.46581 * 35.00318 * 10 9 8 12 12 C 1.50700 * 109.46969 * 154.99519 * 10 9 8 13 13 H 1.07998 * 120.00370 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99824 * 180.02562 * 12 10 9 15 15 N 1.31523 * 120.00027 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99983 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 60.00067 * 16 14 12 18 18 H 1.48504 * 109.47024 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46769 * 299.99484 * 16 14 12 20 20 C 1.52992 * 109.47005 * 275.00182 * 10 9 8 21 21 C 1.52997 * 109.47482 * 64.99872 * 20 10 9 22 22 H 1.08996 * 109.47145 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46689 * 300.00033 * 1 2 3 24 24 H 1.09000 * 109.47520 * 59.99183 * 1 2 3 25 25 H 1.09000 * 109.46647 * 240.00435 * 2 1 3 26 26 H 1.08995 * 109.46956 * 120.00393 * 2 1 3 27 27 H 1.07993 * 119.90379 * 179.97438 * 5 4 3 28 28 H 1.07994 * 119.94541 * 180.02562 * 6 5 4 29 29 H 0.97001 * 120.00119 * 179.71636 * 9 8 7 30 30 H 0.96993 * 119.99651 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47103 * 304.99625 * 20 10 9 32 32 H 1.08998 * 109.46862 * 185.00437 * 20 10 9 33 33 H 1.09002 * 109.47153 * 59.99783 * 21 20 10 34 34 H 1.09001 * 109.46832 * 299.99974 * 21 20 10 35 35 H 1.09004 * 109.47261 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2522 2.0439 -1.1421 5 6 2.6926 3.2910 -1.1429 6 6 2.9239 3.9470 0.0514 7 7 2.7016 3.3313 1.2002 8 6 2.2646 2.0786 1.2057 9 7 2.0339 1.4262 2.4112 10 6 2.2790 2.1199 3.6782 11 1 2.0266 3.1747 3.5695 12 6 1.4255 1.5081 4.7591 13 1 0.7668 0.6846 4.5259 14 6 1.4857 1.9996 6.0459 15 7 2.2876 3.0027 6.3298 16 14 0.4284 1.2408 7.3859 17 1 0.7729 -0.1960 7.5343 18 1 0.6758 1.9448 8.6698 19 1 -1.0046 1.3710 7.0189 20 6 3.7553 1.9848 4.0561 21 6 4.6153 2.7144 3.0222 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.8719 3.7980 -2.0793 28 1 3.2831 4.9654 0.0462 29 1 1.7105 0.5117 2.4137 30 1 2.3296 3.3487 7.2350 31 1 4.0298 0.9302 4.0779 32 1 3.9199 2.4234 5.0403 33 1 4.3408 3.7691 3.0005 34 1 4.4506 2.2757 2.0381 35 1 5.6671 2.6186 3.2918 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:29 Heat of formation + Delta-G solvation = 23.207292 kcal Electronic energy + Delta-G solvation = -16953.271804 eV Core-core repulsion = 14371.398508 eV Total energy + Delta-G solvation = -2581.873295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.91518 -38.11656 -35.86587 -35.06430 -33.42347 -32.34054 -30.37453 -28.45168 -25.95692 -25.13115 -23.94680 -22.64555 -21.53520 -19.52502 -18.16430 -17.77276 -16.80511 -16.71827 -16.22482 -15.59786 -15.22930 -14.83633 -14.53358 -14.44022 -13.95120 -13.52726 -13.22310 -13.16429 -12.85793 -12.69836 -12.42503 -12.33986 -12.14202 -12.10055 -11.94446 -11.85881 -11.51287 -11.04449 -10.73837 -10.43945 -9.72339 -8.42807 -8.14973 -6.31536 0.21916 0.58032 1.43773 1.44606 1.52316 2.34586 2.60152 3.03669 3.14217 3.45916 3.69767 3.75192 4.22894 4.33452 4.46715 4.51074 4.55543 4.58732 4.61875 4.79311 4.92620 5.02218 5.10151 5.16171 5.28589 5.33964 5.47674 5.50900 5.60128 5.78670 5.87632 6.11168 6.36424 6.52845 6.78056 6.98678 7.32866 7.44307 8.89114 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028143 B = 0.007935 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.675753 B = 3527.699213 C = 4172.009340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.005 4.005 4 N -0.420 5.420 5 C -0.039 4.039 6 C 0.089 3.911 7 N -0.523 5.523 8 C 0.353 3.647 9 N -0.692 5.692 10 C 0.290 3.710 11 H 0.012 0.988 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.120 4.120 21 C -0.116 4.116 22 H 0.084 0.916 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.193 0.807 28 H 0.189 0.811 29 H 0.406 0.594 30 H 0.265 0.735 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.034 0.966 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -2.820 -11.106 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.155 4.155 4 N -0.134 5.134 5 C -0.200 4.200 6 C -0.072 4.072 7 N -0.246 5.246 8 C 0.112 3.888 9 N -0.321 5.321 10 C 0.186 3.814 11 H 0.030 0.970 12 C -0.590 4.590 13 H 0.082 0.918 14 C -0.180 4.180 15 N -0.549 5.549 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.160 4.160 21 C -0.173 4.173 22 H 0.103 0.897 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.210 0.790 28 H 0.206 0.794 29 H 0.244 0.756 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.137 -2.602 -10.730 11.042 hybrid contribution -0.443 -0.215 0.994 1.109 sum -0.306 -2.817 -9.736 10.140 Atomic orbital electron populations 1.21671 0.93783 1.02946 1.01241 1.20287 0.96757 0.89084 1.03590 1.21741 1.06622 0.99638 0.87512 1.67986 1.07557 1.09808 1.28055 1.23662 1.04082 0.91970 1.00324 1.23978 0.94193 1.01400 0.87655 1.68279 1.16741 1.08446 1.31147 1.19502 0.91278 0.89973 0.88022 1.45217 1.68330 1.15893 1.02697 1.18338 0.92056 0.91920 0.79113 0.97009 1.21560 1.24532 1.18562 0.94339 0.91818 1.25660 0.96561 0.95226 1.00573 1.70019 1.38111 1.25803 1.20937 0.85528 0.78961 0.78735 0.77895 1.19232 1.20993 1.19881 1.21786 0.96632 0.97545 1.00004 1.21625 0.97588 1.00088 0.98005 0.89746 0.94255 0.92843 0.89000 0.90530 0.79009 0.79424 0.75636 0.92615 0.95312 0.91028 0.93805 0.94692 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.73 16 2 C -0.06 -1.58 5.81 29.85 0.17 -1.41 16 3 C -0.01 -0.17 6.07 42.79 0.26 0.09 16 4 N -0.42 -13.44 10.41 -182.77 -1.90 -15.34 16 5 C -0.04 -1.09 11.21 84.62 0.95 -0.14 16 6 C 0.09 2.71 11.22 84.63 0.95 3.66 16 7 N -0.52 -20.57 6.64 -192.64 -1.28 -21.84 16 8 C 0.35 13.80 6.00 133.02 0.80 14.60 16 9 N -0.69 -28.93 5.06 -327.76 -1.66 -30.59 16 10 C 0.29 14.48 2.25 44.24 0.10 14.58 16 11 H 0.01 0.69 7.55 -2.39 -0.02 0.68 16 12 C -0.55 -29.13 8.73 25.60 0.22 -28.91 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 14 C 0.02 1.08 5.29 84.65 0.45 1.53 16 15 N -0.91 -51.14 11.30 21.45 0.24 -50.90 16 16 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 21 C -0.12 -4.95 8.45 71.98 0.61 -4.34 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 2.00 6.56 -2.39 -0.02 1.99 16 27 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.41 15.37 6.53 -92.71 -0.61 14.76 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 33 H 0.04 1.94 7.68 -2.39 -0.02 1.92 16 34 H 0.03 1.45 5.60 -2.39 -0.01 1.44 16 35 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -61.61 285.52 3.29 -58.32 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.48 Total: 25.04 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.39 Total: -8.74 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -4.60 Total: -118.67 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -61.61 3.29 -58.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.525 kcal (2) G-P(sol) polarization free energy of solvation -61.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds