Wall clock time and date at job start Sun Mar 29 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46918 * 2 1 4 4 C 1.38825 * 119.99379 * 125.00001 * 3 2 1 5 5 C 1.38562 * 118.03792 * 179.97438 * 4 3 2 6 6 C 1.39481 * 117.90383 * 0.02562 * 5 4 3 7 7 N 1.39048 * 120.15523 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99905 * 359.72155 * 7 6 5 9 9 H 1.08999 * 109.47480 * 35.27752 * 8 7 6 10 10 C 1.50696 * 109.47278 * 155.27897 * 8 7 6 11 11 H 1.08002 * 120.00157 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00447 * 179.97438 * 10 8 7 13 13 N 1.31510 * 119.99635 * 359.97438 * 12 10 8 14 14 Si 1.86792 * 120.00210 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47212 * 89.99990 * 14 12 10 16 16 H 1.48498 * 109.47421 * 210.00302 * 14 12 10 17 17 H 1.48504 * 109.47342 * 330.00327 * 14 12 10 18 18 C 1.53008 * 109.47014 * 275.27678 * 8 7 6 19 19 C 1.52999 * 109.47188 * 65.00471 * 18 8 7 20 20 N 1.32484 * 119.68822 * 0.27152 * 6 5 4 21 21 N 1.28351 * 122.06727 * 359.40350 * 20 6 5 22 22 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47428 * 299.99869 * 1 2 3 24 24 H 1.08998 * 109.47290 * 60.00522 * 1 2 3 25 25 H 1.08998 * 109.47428 * 240.00131 * 2 1 3 26 26 H 1.09008 * 109.47298 * 119.99546 * 2 1 3 27 27 H 1.07997 * 120.97653 * 0.02562 * 4 3 2 28 28 H 1.07998 * 121.04215 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00245 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00295 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46580 * 185.00009 * 18 8 7 32 32 H 1.08993 * 109.47190 * 304.99657 * 18 8 7 33 33 H 1.08995 * 109.47136 * 180.02562 * 19 18 8 34 34 H 1.09001 * 109.46778 * 299.99805 * 19 18 8 35 35 H 1.08998 * 109.47035 * 59.99571 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9137 1.8453 0.9849 5 6 3.3501 3.1598 0.9458 6 6 2.8753 3.9750 -0.0815 7 7 3.2831 5.3016 -0.1657 8 6 4.2090 5.8479 0.8296 9 1 4.9203 5.0769 1.1260 10 6 4.9529 7.0162 0.2359 11 1 4.7561 7.3211 -0.7814 12 6 5.8848 7.6960 0.9912 13 7 6.1242 7.3250 2.2300 14 14 6.8074 9.1437 0.2549 15 1 6.0514 10.3955 0.5130 16 1 8.1528 9.2409 0.8760 17 1 6.9516 8.9456 -1.2098 18 6 3.4221 6.3144 2.0561 19 6 2.7677 5.1076 2.7316 20 7 2.0300 3.4807 -0.9739 21 7 1.6346 2.2602 -0.9350 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.2500 1.1705 1.7582 28 1 4.0363 3.5411 1.6875 29 1 2.9512 5.8667 -0.8809 30 1 6.7800 7.8030 2.7613 31 1 4.0990 6.8010 2.7584 32 1 2.6512 7.0199 1.7464 33 1 2.2068 5.4401 3.6050 34 1 2.0909 4.6210 2.0293 35 1 3.5387 4.4022 3.0412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:00 Heat of formation + Delta-G solvation = 46.047513 kcal Electronic energy + Delta-G solvation = -16561.315099 eV Core-core repulsion = 13980.432230 eV Total energy + Delta-G solvation = -2580.882869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45859 -36.91902 -34.37277 -32.95385 -31.87394 -31.20521 -29.15953 -26.64632 -24.73791 -23.49920 -22.79241 -21.70089 -19.64001 -17.83950 -16.71813 -16.08595 -15.35785 -14.97131 -14.75035 -14.19317 -13.81453 -13.50579 -13.28913 -12.81569 -12.60108 -12.10457 -11.94229 -11.63163 -11.44656 -11.17620 -11.05656 -10.95860 -10.52711 -10.47336 -10.24478 -10.07875 -9.73477 -9.48744 -9.20111 -8.90738 -8.58807 -7.07215 -6.28517 -4.36970 1.45035 1.80749 3.17674 3.25001 3.27974 3.90191 4.23339 4.28160 4.76609 4.98962 5.04623 5.14567 5.33606 5.41307 5.52968 5.58553 5.79161 5.92290 6.03252 6.06817 6.16336 6.24907 6.30156 6.34043 6.60903 6.65227 6.74700 6.80553 7.02581 7.27181 7.54494 7.63333 7.89660 8.07304 8.48166 8.72024 9.30037 9.51692 10.77258 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049940 B = 0.005692 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.536905 B = 4917.700341 C = 5144.552006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.013 4.013 4 C -0.090 4.090 5 C -0.176 4.176 6 C 0.350 3.650 7 N -0.686 5.686 8 C 0.273 3.727 9 H 0.042 0.958 10 C -0.533 4.533 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.135 4.135 19 C -0.153 4.153 20 N -0.331 5.331 21 N -0.207 5.207 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.400 0.600 30 H 0.266 0.734 31 H 0.105 0.895 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -9.529 0.768 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.165 4.165 4 C -0.118 4.118 5 C -0.209 4.209 6 C 0.106 3.894 7 N -0.313 5.313 8 C 0.171 3.829 9 H 0.060 0.940 10 C -0.571 4.571 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.174 4.174 19 C -0.210 4.210 20 N -0.184 5.184 21 N -0.048 5.048 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.173 0.827 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.879 -9.062 -0.257 10.805 hybrid contribution 1.340 0.835 0.858 1.797 sum -4.539 -8.227 0.601 9.415 Atomic orbital electron populations 1.21696 0.94792 1.01094 1.02608 1.20163 0.96373 0.90315 1.02342 1.22249 1.00351 0.98277 0.95589 1.21935 0.95963 0.95544 0.98385 1.22282 1.03887 0.94018 1.00756 1.20284 0.90259 0.88266 0.90604 1.45409 1.48055 1.05826 1.32057 1.18914 0.85675 0.93947 0.84379 0.94017 1.21172 1.22037 1.14317 0.99583 0.91734 1.24861 0.96388 0.97483 0.94771 1.69845 1.33765 1.40696 1.07985 0.86390 0.78991 0.82086 0.79393 1.20411 1.20983 1.19730 1.22069 0.99218 0.96204 0.99889 1.22204 0.99651 0.99868 0.99290 1.72943 1.15104 1.06516 1.23885 1.72446 1.16734 0.96819 1.18819 0.92813 0.93086 0.91675 0.90779 0.90992 0.84548 0.82740 0.76567 0.92386 0.87702 0.94189 0.94578 0.94069 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.77 37.16 0.36 -1.24 16 2 C -0.05 -0.62 6.35 -27.89 -0.18 -0.80 16 3 C -0.01 -0.21 6.26 -82.39 -0.52 -0.72 16 4 C -0.09 -1.39 9.81 -39.24 -0.39 -1.77 16 5 C -0.18 -3.18 6.79 -39.00 -0.26 -3.44 16 6 C 0.35 7.08 6.57 -154.77 -1.02 6.06 16 7 N -0.69 -14.46 5.18 -54.93 -0.28 -14.74 16 8 C 0.27 6.30 2.20 -69.08 -0.15 6.15 16 9 H 0.04 1.03 6.50 -51.93 -0.34 0.70 16 10 C -0.53 -13.48 8.73 -34.44 -0.30 -13.78 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 13 N -0.89 -23.09 11.29 55.43 0.63 -22.47 16 14 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 19 C -0.15 -2.89 8.22 37.16 0.31 -2.59 16 20 N -0.33 -6.84 11.54 31.23 0.36 -6.48 16 21 N -0.21 -3.92 11.04 33.61 0.37 -3.55 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.68 7.92 -51.92 -0.41 0.27 16 27 H 0.14 1.61 8.00 -52.49 -0.42 1.19 16 28 H 0.16 2.81 4.12 -52.49 -0.22 2.59 16 29 H 0.40 8.21 8.67 -40.82 -0.35 7.85 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.78 5.37 -51.93 -0.28 0.51 16 35 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -26.93 282.91 -6.79 -33.72 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.72 Total: 7.89 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.38 Total: -13.61 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 1.07 Total: -47.24 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.93 -6.79 -33.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.772 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds