Wall clock time and date at job start Sun Mar 29 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.46918 * 2 1 4 4 C 1.38825 * 119.99379 * 125.00001 * 3 2 1 5 5 C 1.38562 * 118.03792 * 179.97438 * 4 3 2 6 6 C 1.39481 * 117.90383 * 0.02562 * 5 4 3 7 7 N 1.39048 * 120.15523 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99905 * 359.72155 * 7 6 5 9 9 H 1.08999 * 109.47480 * 35.27752 * 8 7 6 10 10 C 1.50696 * 109.47278 * 155.27897 * 8 7 6 11 11 H 1.08002 * 120.00157 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00447 * 179.97438 * 10 8 7 13 13 N 1.31510 * 119.99635 * 359.97438 * 12 10 8 14 14 Si 1.86792 * 120.00210 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47212 * 89.99990 * 14 12 10 16 16 H 1.48498 * 109.47421 * 210.00302 * 14 12 10 17 17 H 1.48504 * 109.47342 * 330.00327 * 14 12 10 18 18 C 1.53008 * 109.47014 * 275.27678 * 8 7 6 19 19 C 1.52999 * 109.47188 * 65.00471 * 18 8 7 20 20 N 1.32484 * 119.68822 * 0.27152 * 6 5 4 21 21 N 1.28351 * 122.06727 * 359.40350 * 20 6 5 22 22 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47428 * 299.99869 * 1 2 3 24 24 H 1.08998 * 109.47290 * 60.00522 * 1 2 3 25 25 H 1.08998 * 109.47428 * 240.00131 * 2 1 3 26 26 H 1.09008 * 109.47298 * 119.99546 * 2 1 3 27 27 H 1.07997 * 120.97653 * 0.02562 * 4 3 2 28 28 H 1.07998 * 121.04215 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00245 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00295 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.46580 * 185.00009 * 18 8 7 32 32 H 1.08993 * 109.47190 * 304.99657 * 18 8 7 33 33 H 1.08995 * 109.47136 * 180.02562 * 19 18 8 34 34 H 1.09001 * 109.46778 * 299.99805 * 19 18 8 35 35 H 1.08998 * 109.47035 * 59.99571 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9137 1.8453 0.9849 5 6 3.3501 3.1598 0.9458 6 6 2.8753 3.9750 -0.0815 7 7 3.2831 5.3016 -0.1657 8 6 4.2090 5.8479 0.8296 9 1 4.9203 5.0769 1.1260 10 6 4.9529 7.0162 0.2359 11 1 4.7561 7.3211 -0.7814 12 6 5.8848 7.6960 0.9912 13 7 6.1242 7.3250 2.2300 14 14 6.8074 9.1437 0.2549 15 1 6.0514 10.3955 0.5130 16 1 8.1528 9.2409 0.8760 17 1 6.9516 8.9456 -1.2098 18 6 3.4221 6.3144 2.0561 19 6 2.7677 5.1076 2.7316 20 7 2.0300 3.4807 -0.9739 21 7 1.6346 2.2602 -0.9350 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.2500 1.1705 1.7582 28 1 4.0363 3.5411 1.6875 29 1 2.9512 5.8667 -0.8809 30 1 6.7800 7.8030 2.7613 31 1 4.0990 6.8010 2.7584 32 1 2.6512 7.0199 1.7464 33 1 2.2068 5.4401 3.6050 34 1 2.0909 4.6210 2.0293 35 1 3.5387 4.4022 3.0412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:59 Heat of formation + Delta-G solvation = 30.244604 kcal Electronic energy + Delta-G solvation = -16562.000365 eV Core-core repulsion = 13980.432230 eV Total energy + Delta-G solvation = -2581.568135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87276 -38.53169 -35.68015 -34.63992 -33.21643 -32.85565 -30.57102 -28.36685 -26.03883 -25.15187 -24.24090 -22.96947 -21.27868 -19.45418 -18.20582 -17.83221 -16.81785 -16.53876 -16.20284 -15.64516 -15.07967 -14.83620 -14.74291 -14.33393 -14.02516 -13.65100 -13.26712 -13.15573 -12.93819 -12.74948 -12.63252 -12.19839 -12.10304 -12.00621 -11.72382 -11.63329 -11.36958 -11.03736 -10.81188 -10.53195 -10.27801 -8.64547 -8.21806 -6.36252 0.07725 0.43807 1.41976 1.44136 1.53041 2.27446 2.50486 2.83744 3.08473 3.54229 3.81608 3.91351 3.99697 4.25683 4.41177 4.46937 4.51362 4.59918 4.62481 4.77050 4.88834 4.99857 5.10934 5.12698 5.18946 5.29045 5.32514 5.43589 5.49535 5.56006 5.64252 5.80650 6.07470 6.34985 6.68926 6.94003 7.34184 8.08925 8.82915 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.049940 B = 0.005692 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.536905 B = 4917.700341 C = 5144.552006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.004 4.004 4 C -0.076 4.076 5 C -0.187 4.187 6 C 0.334 3.666 7 N -0.696 5.696 8 C 0.285 3.715 9 H 0.023 0.977 10 C -0.553 4.553 11 H 0.058 0.942 12 C 0.028 3.972 13 N -0.906 5.906 14 Si 0.962 3.038 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.273 1.273 18 C -0.128 4.128 19 C -0.140 4.140 20 N -0.359 5.359 21 N -0.235 5.235 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.183 0.817 28 H 0.152 0.848 29 H 0.397 0.603 30 H 0.268 0.732 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.038 0.962 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -11.387 1.503 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.156 4.156 4 C -0.103 4.103 5 C -0.220 4.220 6 C 0.090 3.910 7 N -0.325 5.325 8 C 0.181 3.819 9 H 0.040 0.960 10 C -0.591 4.591 11 H 0.076 0.924 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.787 3.213 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.167 4.167 19 C -0.197 4.197 20 N -0.211 5.211 21 N -0.075 5.075 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.125 0.875 27 H 0.200 0.800 28 H 0.170 0.830 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.058 -10.948 0.459 12.521 hybrid contribution 1.338 1.247 0.629 1.934 sum -4.720 -9.701 1.088 10.843 Atomic orbital electron populations 1.21676 0.94376 1.02578 1.01359 1.20382 0.96666 0.87624 1.04533 1.23041 0.98831 0.99656 0.94096 1.22457 0.94316 0.94845 0.98720 1.22373 1.04191 0.95155 1.00296 1.20412 0.90967 0.88017 0.91603 1.45143 1.48700 1.06581 1.32045 1.18596 0.85659 0.92619 0.84997 0.95961 1.21480 1.22769 1.15342 0.99557 0.92381 1.25538 0.97068 0.99592 0.95145 1.69940 1.34122 1.41555 1.08737 0.85493 0.77902 0.79358 0.78500 1.20028 1.20550 1.19801 1.21900 0.98394 0.97174 0.99233 1.22057 0.99695 0.98550 0.99398 1.72870 1.15813 1.07733 1.24673 1.72407 1.17878 0.96695 1.20560 0.89985 0.93558 0.93751 0.89779 0.87534 0.79983 0.83044 0.76873 0.92278 0.89987 0.95230 0.93012 0.94276 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.77 71.98 0.70 -2.04 16 2 C -0.05 -1.04 6.35 29.85 0.19 -0.85 16 3 C 0.00 -0.11 6.26 42.70 0.27 0.16 16 4 C -0.08 -2.09 9.81 22.49 0.22 -1.87 16 5 C -0.19 -6.55 6.79 22.65 0.15 -6.39 16 6 C 0.33 13.59 6.57 133.11 0.87 14.46 16 7 N -0.70 -30.17 5.18 -327.70 -1.70 -31.87 16 8 C 0.28 13.45 2.20 44.25 0.10 13.54 16 9 H 0.02 1.14 6.50 -2.39 -0.02 1.13 16 10 C -0.55 -28.64 8.73 25.60 0.22 -28.42 16 11 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 12 C 0.03 1.43 5.29 84.66 0.45 1.87 16 13 N -0.91 -47.71 11.29 21.45 0.24 -47.47 16 14 Si 0.96 41.23 29.54 68.60 2.03 43.25 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.13 -5.72 5.45 30.60 0.17 -5.56 16 19 C -0.14 -5.19 8.22 71.98 0.59 -4.60 16 20 N -0.36 -14.95 11.54 -55.10 -0.64 -15.59 16 21 N -0.24 -8.75 11.04 -47.57 -0.53 -9.27 16 22 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.04 1.04 7.96 -2.39 -0.02 1.02 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.11 1.41 7.92 -2.38 -0.02 1.39 16 27 H 0.18 3.32 8.00 -2.91 -0.02 3.29 16 28 H 0.15 5.39 4.12 -2.91 -0.01 5.38 16 29 H 0.40 17.05 8.67 -92.71 -0.80 16.25 16 30 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.46 5.37 -2.39 -0.01 1.45 16 35 H 0.06 2.04 6.33 -2.39 -0.02 2.02 16 Total: -1.00 -58.91 282.91 3.64 -55.26 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.30 Total: 25.37 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.94 Total: -19.69 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -2.62 Total: -104.20 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -58.91 3.64 -55.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.508 kcal (2) G-P(sol) polarization free energy of solvation -58.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds