Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46904 * 2 1 4 4 N 1.31784 * 119.08209 * 90.00505 * 3 2 1 5 5 C 1.32552 * 121.01123 * 179.97438 * 4 3 2 6 6 C 1.38118 * 119.19907 * 359.97438 * 5 4 3 7 7 C 1.39626 * 118.33179 * 359.97438 * 6 5 4 8 8 N 1.38548 * 120.53006 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99968 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47081 * 34.99926 * 9 8 7 11 11 C 1.50695 * 109.47356 * 155.00221 * 9 8 7 12 12 H 1.08011 * 119.99828 * 34.99790 * 11 9 8 13 13 C 1.37874 * 120.00418 * 215.00379 * 11 9 8 14 14 N 1.31518 * 120.00048 * 184.82244 * 13 11 9 15 15 Si 1.86802 * 119.99733 * 4.82795 * 13 11 9 16 16 H 1.48494 * 109.47110 * 84.85994 * 15 13 11 17 17 H 1.48502 * 109.47109 * 204.85965 * 15 13 11 18 18 H 1.48498 * 109.47101 * 324.85949 * 15 13 11 19 19 C 1.53001 * 109.47039 * 275.00352 * 9 8 7 20 20 C 1.52993 * 109.47781 * 65.73460 * 19 9 8 21 21 N 1.31753 * 119.08528 * 270.00097 * 3 2 1 22 22 H 1.09006 * 109.47057 * 299.99628 * 1 2 3 23 23 H 1.08998 * 109.47276 * 59.99538 * 1 2 3 24 24 H 1.09002 * 109.47461 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47057 * 240.00372 * 2 1 3 26 26 H 1.08994 * 109.47528 * 120.00021 * 2 1 3 27 27 H 1.08005 * 120.40052 * 180.02562 * 5 4 3 28 28 H 1.07992 * 120.83264 * 180.02562 * 6 5 4 29 29 H 0.96999 * 119.99522 * 180.02562 * 8 7 6 30 30 H 0.97003 * 119.99404 * 179.97438 * 14 13 11 31 31 H 1.09008 * 109.47137 * 185.73843 * 19 9 8 32 32 H 1.09003 * 109.47150 * 305.73133 * 19 9 8 33 33 H 1.09003 * 109.47046 * 59.99609 * 20 19 9 34 34 H 1.08994 * 109.47864 * 180.02562 * 20 19 9 35 35 H 1.09008 * 109.47098 * 300.00408 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2458 2.0248 1.1517 5 6 2.6879 3.2736 1.1963 6 6 2.9268 3.9465 0.0140 7 6 2.6912 3.2772 -1.1886 8 7 2.9150 3.9090 -2.4011 9 6 3.4032 5.2899 -2.4285 10 1 4.0850 5.4508 -1.5934 11 6 4.1291 5.5405 -3.7251 12 1 3.7891 5.0673 -4.6345 13 6 5.2273 6.3737 -3.7505 14 7 5.8033 6.6678 -4.8957 15 14 5.8973 7.0847 -2.1583 16 1 6.8260 6.1094 -1.5328 17 1 6.6253 8.3464 -2.4473 18 1 4.7730 7.3637 -1.2291 19 6 2.2191 6.2518 -2.3127 20 6 1.5684 6.0967 -0.9368 21 7 2.2457 2.0247 -1.1514 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8599 3.7589 2.1457 28 1 3.2875 4.9643 0.0196 29 1 2.7484 3.4368 -3.2319 30 1 6.5757 7.2544 -4.9135 31 1 2.5701 7.2766 -2.4352 32 1 1.4881 6.0232 -3.0883 33 1 2.2994 6.3254 -0.1613 34 1 0.7246 6.7816 -0.8545 35 1 1.2174 5.0719 -0.8144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = 37.636621 kcal Electronic energy + Delta-G solvation = -16701.846926 eV Core-core repulsion = 14120.599334 eV Total energy + Delta-G solvation = -2581.247593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53131 -37.08812 -33.87553 -33.45582 -32.31243 -30.83183 -29.87697 -27.30749 -24.72016 -23.32923 -22.75933 -21.61946 -19.67448 -18.08185 -17.01534 -16.32007 -15.28325 -14.97932 -14.82255 -14.12672 -13.92146 -13.79672 -13.32236 -13.09534 -12.92967 -12.25003 -12.13730 -12.05985 -11.59499 -11.22919 -11.06960 -10.97920 -10.89554 -10.47020 -10.35422 -10.03699 -9.86873 -9.36728 -9.21622 -8.81552 -8.69969 -7.32630 -6.36500 -4.41363 1.53159 1.93970 3.10711 3.18444 3.20946 3.74613 4.16189 4.33320 4.44461 4.82281 4.99082 5.26770 5.36245 5.43437 5.50026 5.58033 5.78425 5.85172 5.90780 5.92029 6.00175 6.07613 6.19442 6.26688 6.32704 6.49705 6.61646 6.70515 6.91546 7.07149 7.22381 7.41521 7.85457 8.21836 8.40590 8.66194 8.83422 9.22843 10.75336 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035283 B = 0.006858 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.391907 B = 4081.738336 C = 4208.528262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.352 3.648 4 N -0.579 5.579 5 C 0.161 3.839 6 C -0.303 4.303 7 C 0.443 3.557 8 N -0.677 5.677 9 C 0.242 3.758 10 H 0.044 0.956 11 C -0.532 4.532 12 H 0.081 0.919 13 C 0.083 3.917 14 N -0.883 5.883 15 Si 0.872 3.128 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.130 4.130 20 C -0.158 4.158 21 N -0.589 5.589 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.402 0.598 30 H 0.270 0.730 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 -5.908 9.955 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C 0.082 3.918 4 N -0.300 5.300 5 C 0.002 3.998 6 C -0.331 4.331 7 C 0.196 3.804 8 N -0.303 5.303 9 C 0.139 3.861 10 H 0.062 0.938 11 C -0.570 4.570 12 H 0.099 0.901 13 C -0.122 4.122 14 N -0.518 5.518 15 Si 0.698 3.302 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.185 1.185 19 C -0.170 4.170 20 C -0.216 4.216 21 N -0.316 5.316 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.172 0.828 28 H 0.162 0.838 29 H 0.238 0.762 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.163 -6.419 9.813 13.741 hybrid contribution 0.806 1.340 0.347 1.602 sum -6.357 -5.079 10.160 13.017 Atomic orbital electron populations 1.21650 0.94102 1.01807 1.02306 1.20245 0.96363 0.88979 1.03467 1.22681 0.89775 0.96163 0.83151 1.68144 1.20963 1.11148 1.29755 1.22664 0.90101 0.89553 0.97516 1.22444 1.13412 1.04115 0.93168 1.18817 0.86052 0.87589 0.87924 1.45662 1.65964 1.15022 1.03689 1.19296 0.91756 0.76500 0.98561 0.93813 1.20931 1.12876 1.29855 0.93311 0.90082 1.24944 0.95581 0.95381 0.96336 1.69871 1.21641 1.35220 1.25087 0.86939 0.79950 0.79223 0.84103 1.19704 1.20827 1.18537 1.22183 0.98768 1.00763 0.95268 1.22255 0.99786 1.00899 0.98617 1.67798 1.22937 1.09836 1.30986 0.92505 0.92429 0.92004 0.89731 0.89730 0.82751 0.83803 0.76231 0.92017 0.91502 0.92346 0.93137 0.94069 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.16 0.37 -1.22 16 2 C -0.05 -0.66 6.37 -27.88 -0.18 -0.84 16 3 C 0.35 5.99 6.90 -157.24 -1.08 4.91 16 4 N -0.58 -9.82 10.33 -10.81 -0.11 -9.93 16 5 C 0.16 2.59 11.29 -17.28 -0.20 2.39 16 6 C -0.30 -5.38 6.79 -39.11 -0.27 -5.64 16 7 C 0.44 8.62 6.56 -154.77 -1.02 7.60 16 8 N -0.68 -13.77 5.17 -54.91 -0.28 -14.05 16 9 C 0.24 5.26 1.86 -69.09 -0.13 5.13 16 10 H 0.04 0.98 3.67 -51.93 -0.19 0.79 16 11 C -0.53 -13.70 9.05 -34.44 -0.31 -14.01 16 12 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.88 -25.17 13.96 55.43 0.77 -24.40 16 15 Si 0.87 19.85 26.99 -169.99 -4.59 15.26 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.26 -5.54 6.82 56.52 0.39 -5.15 16 19 C -0.13 -2.56 5.59 -26.73 -0.15 -2.71 16 20 C -0.16 -2.68 8.23 37.15 0.31 -2.38 16 21 N -0.59 -11.12 10.37 -9.96 -0.10 -11.22 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 28 H 0.14 2.52 4.12 -52.49 -0.22 2.30 16 29 H 0.40 8.08 8.72 -40.82 -0.36 7.73 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.82 6.39 -51.93 -0.33 0.48 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.92 5.36 -51.92 -0.28 0.65 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -28.33 283.65 -7.54 -35.88 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.75 Total: 8.86 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.75 Total: -4.67 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.27 Total: -59.60 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.59 Total: 15.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.33 -7.54 -35.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.513 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds