Wall clock time and date at job start Sun Mar 29 2020 21:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46904 * 2 1 4 4 N 1.31784 * 119.08209 * 90.00505 * 3 2 1 5 5 C 1.32552 * 121.01123 * 179.97438 * 4 3 2 6 6 C 1.38118 * 119.19907 * 359.97438 * 5 4 3 7 7 C 1.39626 * 118.33179 * 359.97438 * 6 5 4 8 8 N 1.38548 * 120.53006 * 179.97438 * 7 6 5 9 9 C 1.46495 * 119.99968 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47081 * 34.99926 * 9 8 7 11 11 C 1.50695 * 109.47356 * 155.00221 * 9 8 7 12 12 H 1.08011 * 119.99828 * 34.99790 * 11 9 8 13 13 C 1.37874 * 120.00418 * 215.00379 * 11 9 8 14 14 N 1.31518 * 120.00048 * 184.82244 * 13 11 9 15 15 Si 1.86802 * 119.99733 * 4.82795 * 13 11 9 16 16 H 1.48494 * 109.47110 * 84.85994 * 15 13 11 17 17 H 1.48502 * 109.47109 * 204.85965 * 15 13 11 18 18 H 1.48498 * 109.47101 * 324.85949 * 15 13 11 19 19 C 1.53001 * 109.47039 * 275.00352 * 9 8 7 20 20 C 1.52993 * 109.47781 * 65.73460 * 19 9 8 21 21 N 1.31753 * 119.08528 * 270.00097 * 3 2 1 22 22 H 1.09006 * 109.47057 * 299.99628 * 1 2 3 23 23 H 1.08998 * 109.47276 * 59.99538 * 1 2 3 24 24 H 1.09002 * 109.47461 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47057 * 240.00372 * 2 1 3 26 26 H 1.08994 * 109.47528 * 120.00021 * 2 1 3 27 27 H 1.08005 * 120.40052 * 180.02562 * 5 4 3 28 28 H 1.07992 * 120.83264 * 180.02562 * 6 5 4 29 29 H 0.96999 * 119.99522 * 180.02562 * 8 7 6 30 30 H 0.97003 * 119.99404 * 179.97438 * 14 13 11 31 31 H 1.09008 * 109.47137 * 185.73843 * 19 9 8 32 32 H 1.09003 * 109.47150 * 305.73133 * 19 9 8 33 33 H 1.09003 * 109.47046 * 59.99609 * 20 19 9 34 34 H 1.08994 * 109.47864 * 180.02562 * 20 19 9 35 35 H 1.09008 * 109.47098 * 300.00408 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2458 2.0248 1.1517 5 6 2.6879 3.2736 1.1963 6 6 2.9268 3.9465 0.0140 7 6 2.6912 3.2772 -1.1886 8 7 2.9150 3.9090 -2.4011 9 6 3.4032 5.2899 -2.4285 10 1 4.0850 5.4508 -1.5934 11 6 4.1291 5.5405 -3.7251 12 1 3.7891 5.0673 -4.6345 13 6 5.2273 6.3737 -3.7505 14 7 5.8033 6.6678 -4.8957 15 14 5.8973 7.0847 -2.1583 16 1 6.8260 6.1094 -1.5328 17 1 6.6253 8.3464 -2.4473 18 1 4.7730 7.3637 -1.2291 19 6 2.2191 6.2518 -2.3127 20 6 1.5684 6.0967 -0.9368 21 7 2.2457 2.0247 -1.1514 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.8599 3.7589 2.1457 28 1 3.2875 4.9643 0.0196 29 1 2.7484 3.4368 -3.2319 30 1 6.5757 7.2544 -4.9135 31 1 2.5701 7.2766 -2.4352 32 1 1.4881 6.0232 -3.0883 33 1 2.2994 6.3254 -0.1613 34 1 0.7246 6.7816 -0.8545 35 1 1.2174 5.0719 -0.8144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:15 Heat of formation + Delta-G solvation = 19.782755 kcal Electronic energy + Delta-G solvation = -16702.621128 eV Core-core repulsion = 14120.599334 eV Total energy + Delta-G solvation = -2582.021794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.89184 -38.63911 -35.22807 -34.87272 -34.09014 -32.24930 -31.21389 -29.03603 -25.88378 -24.95640 -24.20242 -22.91277 -21.19946 -19.79833 -18.50263 -17.90152 -16.90098 -16.41866 -16.22798 -15.62819 -15.29706 -14.87053 -14.75906 -14.69256 -14.30478 -13.81225 -13.78154 -13.24731 -12.89204 -12.73670 -12.59891 -12.39315 -12.01376 -11.91342 -11.87929 -11.75499 -11.40172 -11.12330 -10.84370 -10.55210 -10.06767 -8.82693 -8.40664 -6.50165 0.22342 0.55409 1.32035 1.34030 1.43254 2.23187 2.26578 2.97754 3.03573 3.25953 3.58928 3.95063 4.12976 4.32667 4.34743 4.36997 4.41866 4.46948 4.53928 4.64550 4.81261 4.92062 5.04433 5.09751 5.11675 5.17629 5.21204 5.32907 5.38236 5.49775 5.58096 5.91502 6.06792 6.54127 6.59714 6.80960 7.17735 7.46453 8.74961 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035283 B = 0.006858 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.391907 B = 4081.738336 C = 4208.528262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C 0.342 3.658 4 N -0.582 5.582 5 C 0.170 3.830 6 C -0.312 4.312 7 C 0.427 3.573 8 N -0.689 5.689 9 C 0.252 3.748 10 H 0.046 0.954 11 C -0.535 4.535 12 H 0.041 0.959 13 C 0.027 3.973 14 N -0.934 5.934 15 Si 0.931 3.069 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.230 1.230 19 C -0.128 4.128 20 C -0.148 4.148 21 N -0.608 5.608 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.195 0.805 28 H 0.149 0.851 29 H 0.397 0.603 30 H 0.271 0.729 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -6.159 13.127 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C 0.073 3.927 4 N -0.302 5.302 5 C 0.009 3.991 6 C -0.340 4.340 7 C 0.182 3.818 8 N -0.316 5.316 9 C 0.149 3.851 10 H 0.064 0.936 11 C -0.574 4.574 12 H 0.059 0.941 13 C -0.173 4.173 14 N -0.572 5.572 15 Si 0.754 3.246 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.153 1.153 19 C -0.168 4.168 20 C -0.205 4.205 21 N -0.334 5.334 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.212 0.788 28 H 0.167 0.833 29 H 0.232 0.768 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.943 -6.700 13.014 16.654 hybrid contribution 0.974 1.283 -0.660 1.741 sum -6.969 -5.417 12.355 15.184 Atomic orbital electron populations 1.21608 0.92747 1.03418 1.01357 1.20419 0.97394 0.86809 1.04463 1.23465 0.89024 0.97559 0.82674 1.68279 1.20814 1.11621 1.29512 1.23316 0.88151 0.89078 0.98535 1.22557 1.13995 1.04480 0.93009 1.18996 0.86767 0.88179 0.87891 1.45365 1.67310 1.14683 1.04200 1.19077 0.92312 0.77700 0.96059 0.93589 1.21158 1.13166 1.29099 0.93929 0.94090 1.25801 0.95903 0.95918 0.99719 1.70015 1.22675 1.36836 1.27662 0.85979 0.80044 0.78300 0.80302 1.19573 1.20675 1.15323 1.22076 0.97884 0.99665 0.97150 1.22137 1.00572 1.01042 0.96712 1.67818 1.23473 1.09897 1.32224 0.92817 0.93918 0.89160 0.89385 0.88039 0.78776 0.83319 0.76801 0.91971 0.91937 0.93171 0.91828 0.91985 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.89 71.98 0.71 -1.98 16 2 C -0.05 -1.23 6.37 29.85 0.19 -1.04 16 3 C 0.34 10.97 6.90 138.77 0.96 11.92 16 4 N -0.58 -18.03 10.33 -188.10 -1.94 -19.98 16 5 C 0.17 4.84 11.29 84.56 0.95 5.80 16 6 C -0.31 -10.30 6.79 22.58 0.15 -10.14 16 7 C 0.43 16.18 6.56 133.16 0.87 17.05 16 8 N -0.69 -28.18 5.17 -327.64 -1.69 -29.87 16 9 C 0.25 10.88 1.86 44.24 0.08 10.96 16 10 H 0.05 1.97 3.67 -2.39 -0.01 1.96 16 11 C -0.54 -28.43 9.05 25.60 0.23 -28.20 16 12 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 13 C 0.03 1.46 5.47 84.65 0.46 1.92 16 14 N -0.93 -55.08 13.96 21.45 0.30 -54.78 16 15 Si 0.93 40.32 26.99 68.60 1.85 42.17 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.23 -8.77 6.82 99.48 0.68 -8.09 16 19 C -0.13 -4.90 5.59 30.59 0.17 -4.73 16 20 C -0.15 -4.59 8.23 71.98 0.59 -4.00 16 21 N -0.61 -22.39 10.37 -185.43 -1.92 -24.31 16 22 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.15 4.72 4.12 -2.91 -0.01 4.71 16 29 H 0.40 16.61 8.72 -92.71 -0.81 15.80 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.81 6.39 -2.39 -0.02 1.80 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.48 5.36 -2.38 -0.01 1.47 16 Total: -1.00 -62.21 283.65 2.24 -59.98 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.26 Total: 29.23 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.38 Total: -2.43 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.26 Total: -128.94 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.85 Total: 42.17 kcal Total: -62.21 2.24 -59.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.761 kcal (2) G-P(sol) polarization free energy of solvation -62.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds