Wall clock time and date at job start Sun Mar 29 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47207 * 240.00185 * 2 1 3 5 5 C 1.53001 * 109.47053 * 120.00043 * 2 1 3 6 6 N 1.46495 * 109.47290 * 59.99985 * 5 2 1 7 7 C 1.37935 * 120.00038 * 179.97438 * 6 5 2 8 8 N 1.32611 * 120.23957 * 0.02562 * 7 6 5 9 9 C 1.32239 * 120.09150 * 179.97438 * 8 7 6 10 10 C 1.38975 * 120.56806 * 359.97438 * 9 8 7 11 11 N 1.31718 * 120.47247 * 0.02562 * 10 9 8 12 12 C 1.33908 * 119.89621 * 0.02562 * 11 10 9 13 13 C 1.40816 * 120.27629 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 179.97438 * 13 12 11 15 15 C 1.40118 * 120.00062 * 359.97047 * 13 12 11 16 16 N 1.30729 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47212 * 120.00346 * 17 15 13 20 20 H 1.48497 * 109.47065 * 240.00123 * 17 15 13 21 21 H 1.08996 * 109.47640 * 299.99952 * 1 2 3 22 22 H 1.09001 * 109.47065 * 60.00314 * 1 2 3 23 23 H 1.09004 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46638 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47130 * 299.99746 * 3 2 1 26 26 H 1.09001 * 109.46799 * 60.00073 * 3 2 1 27 27 H 1.09004 * 109.47095 * 299.99365 * 4 2 1 28 28 H 1.08992 * 109.47433 * 59.99937 * 4 2 1 29 29 H 1.09004 * 109.47037 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47096 * 299.99841 * 5 2 1 31 31 H 1.09004 * 109.47084 * 180.02562 * 5 2 1 32 32 H 0.97005 * 119.99837 * 0.02562 * 6 5 2 33 33 H 1.07998 * 119.72196 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.76395 * 179.72244 * 10 9 8 35 35 H 0.97003 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.5516 -2.1024 1.2493 7 6 1.8853 -2.9519 2.2835 8 7 2.6474 -2.5232 3.2805 9 6 2.9651 -3.3399 4.2708 10 6 2.5062 -4.6517 4.2799 11 7 1.7479 -5.1009 3.3010 12 6 1.4156 -4.2903 2.2883 13 6 0.6050 -4.7620 1.2380 14 1 0.3393 -4.1043 0.4236 15 6 0.1430 -6.0848 1.2493 16 7 0.4642 -6.8809 2.2353 17 14 -0.9318 -6.7108 -0.1444 18 1 -1.1482 -5.6216 -1.1302 19 1 -0.2606 -7.8553 -0.8114 20 1 -2.2405 -7.1534 0.4002 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 1.6766 -0.2074 2.1393 31 1 3.1300 -0.7209 1.2495 32 1 0.9942 -2.4198 0.5215 33 1 3.5857 -2.9843 5.0799 34 1 2.7773 -5.3089 5.0929 35 1 0.1441 -7.7965 2.2434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161636759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:46 Heat of formation + Delta-G solvation = 30.692957 kcal Electronic energy + Delta-G solvation = -16729.371153 eV Core-core repulsion = 14147.822460 eV Total energy + Delta-G solvation = -2581.548693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.02811 -37.61424 -33.92900 -33.70866 -31.38794 -29.08184 -27.18339 -27.06498 -25.91941 -25.13327 -21.88695 -21.18353 -18.66607 -17.57086 -16.62837 -15.85251 -15.00675 -14.56468 -14.27380 -14.05914 -13.61958 -13.33177 -13.02404 -12.74503 -12.47132 -12.10093 -11.89036 -11.62871 -11.51224 -11.38956 -11.32142 -10.66768 -10.61963 -10.60711 -10.30679 -10.14834 -9.79780 -9.33247 -9.30428 -8.51176 -7.30049 -6.72223 -6.37773 -4.38179 2.68898 3.06202 3.09192 3.09594 3.29837 3.90362 4.40626 4.77161 4.96491 5.01183 5.11428 5.64212 5.72629 5.73536 5.90150 5.92317 6.00037 6.02326 6.06065 6.12494 6.21885 6.26891 6.31813 6.42880 6.45363 6.59333 6.61580 6.81192 7.04661 7.11249 7.70815 8.01898 8.18339 8.46932 8.66854 8.93012 9.52678 10.04786 10.27602 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.009137 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.340115 B = 3063.581591 C = 4249.567625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.722 5.722 7 C 0.264 3.736 8 N -0.502 5.502 9 C -0.084 4.084 10 C 0.026 3.974 11 N -0.449 5.449 12 C 0.193 3.807 13 C -0.424 4.424 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.715 5.715 17 Si 0.905 3.095 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.402 0.598 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 8.419 -5.662 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.194 4.194 4 C -0.197 4.197 5 C 0.030 3.970 6 N -0.364 5.364 7 C 0.018 3.982 8 N -0.224 5.224 9 C -0.238 4.238 10 C -0.136 4.136 11 N -0.167 5.167 12 C 0.058 3.942 13 C -0.458 4.458 14 H 0.099 0.901 15 C -0.157 4.157 16 N -0.337 5.337 17 Si 0.730 3.270 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.198 1.198 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.240 0.760 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.351 8.301 -5.370 9.893 hybrid contribution -0.567 -0.459 -0.663 0.986 sum -0.917 7.843 -6.034 9.938 Atomic orbital electron populations 1.21852 0.94436 1.02254 1.01201 1.20817 0.96053 0.95600 0.95925 1.21781 1.00989 0.95068 1.01519 1.21853 1.01044 1.00581 0.96267 1.20958 0.97779 0.83040 0.95233 1.43758 1.58555 1.09487 1.24619 1.19330 0.98392 0.90091 0.90432 1.67319 1.15255 1.37252 1.02531 1.22267 1.09070 0.93068 0.99355 1.23134 0.97816 0.94239 0.98457 1.69479 1.13498 1.32693 1.00983 1.19055 0.94431 0.86867 0.93809 1.19232 1.25460 0.96294 1.04837 0.90081 1.26001 0.96196 0.96889 0.96571 1.70108 1.31338 1.05445 1.26807 0.86301 0.79872 0.79601 0.81268 1.18380 1.19820 1.19816 0.92687 0.93070 0.92142 0.92623 0.92734 0.92625 0.92139 0.93067 0.92692 0.93402 0.93404 0.76006 0.86094 0.85937 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.30 37.16 0.31 -1.52 16 2 C -0.08 -1.13 0.78 -154.51 -0.12 -1.25 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.22 16 4 C -0.14 -1.83 8.30 37.16 0.31 -1.52 16 5 C 0.16 2.71 4.58 -4.04 -0.02 2.69 16 6 N -0.72 -14.90 5.01 -59.89 -0.30 -15.20 16 7 C 0.26 6.62 7.51 -154.83 -1.16 5.46 16 8 N -0.50 -12.58 9.71 -11.67 -0.11 -12.69 16 9 C -0.08 -2.02 11.22 -17.10 -0.19 -2.21 16 10 C 0.03 0.66 11.21 -17.33 -0.19 0.47 16 11 N -0.45 -12.62 8.03 -10.79 -0.09 -12.71 16 12 C 0.19 5.27 6.56 -84.61 -0.56 4.72 16 13 C -0.42 -10.94 8.89 -37.90 -0.34 -11.28 16 14 H 0.08 1.90 6.12 -52.49 -0.32 1.58 16 15 C 0.07 1.72 5.50 -17.32 -0.10 1.62 16 16 N -0.71 -18.94 11.48 55.56 0.64 -18.31 16 17 Si 0.91 18.13 29.56 -169.99 -5.03 13.11 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.86 6.86 -51.93 -0.36 0.50 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.86 6.86 -51.93 -0.36 0.51 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.40 7.88 4.15 -40.82 -0.17 7.72 16 33 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 34 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 35 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -29.67 288.12 -7.28 -36.94 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.99 Total: 8.54 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.74 Total: -4.03 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.14 Total: -58.90 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.67 -7.28 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161636759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.637 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds