Wall clock time and date at job start Sun Mar 29 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47207 * 240.00185 * 2 1 3 5 5 C 1.53001 * 109.47053 * 120.00043 * 2 1 3 6 6 N 1.46495 * 109.47290 * 59.99985 * 5 2 1 7 7 C 1.37935 * 120.00038 * 179.97438 * 6 5 2 8 8 N 1.32611 * 120.23957 * 0.02562 * 7 6 5 9 9 C 1.32239 * 120.09150 * 179.97438 * 8 7 6 10 10 C 1.38975 * 120.56806 * 359.97438 * 9 8 7 11 11 N 1.31718 * 120.47247 * 0.02562 * 10 9 8 12 12 C 1.33908 * 119.89621 * 0.02562 * 11 10 9 13 13 C 1.40816 * 120.27629 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00320 * 179.97438 * 13 12 11 15 15 C 1.40118 * 120.00062 * 359.97047 * 13 12 11 16 16 N 1.30729 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47212 * 120.00346 * 17 15 13 20 20 H 1.48497 * 109.47065 * 240.00123 * 17 15 13 21 21 H 1.08996 * 109.47640 * 299.99952 * 1 2 3 22 22 H 1.09001 * 109.47065 * 60.00314 * 1 2 3 23 23 H 1.09004 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46638 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47130 * 299.99746 * 3 2 1 26 26 H 1.09001 * 109.46799 * 60.00073 * 3 2 1 27 27 H 1.09004 * 109.47095 * 299.99365 * 4 2 1 28 28 H 1.08992 * 109.47433 * 59.99937 * 4 2 1 29 29 H 1.09004 * 109.47037 * 179.97438 * 4 2 1 30 30 H 1.09004 * 109.47096 * 299.99841 * 5 2 1 31 31 H 1.09004 * 109.47084 * 180.02562 * 5 2 1 32 32 H 0.97005 * 119.99837 * 0.02562 * 6 5 2 33 33 H 1.07998 * 119.72196 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.76395 * 179.72244 * 10 9 8 35 35 H 0.97003 * 120.00359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.5516 -2.1024 1.2493 7 6 1.8853 -2.9519 2.2835 8 7 2.6474 -2.5232 3.2805 9 6 2.9651 -3.3399 4.2708 10 6 2.5062 -4.6517 4.2799 11 7 1.7479 -5.1009 3.3010 12 6 1.4156 -4.2903 2.2883 13 6 0.6050 -4.7620 1.2380 14 1 0.3393 -4.1043 0.4236 15 6 0.1430 -6.0848 1.2493 16 7 0.4642 -6.8809 2.2353 17 14 -0.9318 -6.7108 -0.1444 18 1 -1.1482 -5.6216 -1.1302 19 1 -0.2606 -7.8553 -0.8114 20 1 -2.2405 -7.1534 0.4002 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7208 -1.2494 30 1 1.6766 -0.2074 2.1393 31 1 3.1300 -0.7209 1.2495 32 1 0.9942 -2.4198 0.5215 33 1 3.5857 -2.9843 5.0799 34 1 2.7773 -5.3089 5.0929 35 1 0.1441 -7.7965 2.2434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161636759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:46 Heat of formation + Delta-G solvation = 12.965379 kcal Electronic energy + Delta-G solvation = -16730.139878 eV Core-core repulsion = 14147.822460 eV Total energy + Delta-G solvation = -2582.317418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87939 -38.93587 -35.83038 -35.34449 -33.31283 -30.87640 -28.20069 -28.10037 -27.79807 -26.68011 -23.79231 -23.02438 -19.91953 -19.46841 -18.29953 -17.64425 -16.79896 -15.88312 -15.86198 -15.69046 -14.94581 -14.91473 -14.49612 -14.26541 -13.84592 -13.80140 -13.17562 -12.98081 -12.92181 -12.73991 -12.51786 -12.38946 -11.89506 -11.78509 -11.67540 -11.58556 -11.52379 -11.23722 -11.14619 -10.39876 -9.23560 -8.57070 -8.26310 -6.32639 0.80556 1.26571 1.42561 1.54647 1.57851 2.22401 2.76548 2.88316 3.81192 3.89553 3.97396 4.01652 4.25564 4.32981 4.53669 4.56451 4.69946 4.79428 4.91077 4.92890 4.94152 4.98566 5.07266 5.11005 5.13626 5.21457 5.23001 5.32203 5.50012 5.51923 5.82234 6.12880 6.32543 6.70919 6.80730 7.03125 7.63817 8.10501 8.44016 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020251 B = 0.009137 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.340115 B = 3063.581591 C = 4249.567625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.132 4.132 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.711 5.711 7 C 0.259 3.741 8 N -0.516 5.516 9 C -0.084 4.084 10 C 0.005 3.995 11 N -0.485 5.485 12 C 0.157 3.843 13 C -0.444 4.444 14 H 0.097 0.903 15 C 0.021 3.979 16 N -0.756 5.756 17 Si 0.987 3.013 18 H -0.245 1.245 19 H -0.269 1.269 20 H -0.269 1.269 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.406 0.594 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 9.596 -7.449 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.189 4.189 4 C -0.196 4.196 5 C 0.032 3.968 6 N -0.353 5.353 7 C 0.011 3.989 8 N -0.239 5.239 9 C -0.237 4.237 10 C -0.157 4.157 11 N -0.204 5.204 12 C 0.022 3.978 13 C -0.479 4.479 14 H 0.115 0.885 15 C -0.200 4.200 16 N -0.380 5.380 17 Si 0.806 3.194 18 H -0.168 1.168 19 H -0.194 1.194 20 H -0.194 1.194 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.245 0.755 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.013 9.518 -7.156 11.951 hybrid contribution -0.302 -0.767 -0.052 0.826 sum -1.315 8.751 -7.208 11.413 Atomic orbital electron populations 1.21845 0.93865 1.01527 1.02358 1.20795 0.96440 0.96560 0.93916 1.21758 1.01121 0.93330 1.02733 1.21846 1.00890 0.99858 0.97002 1.21096 0.97062 0.81499 0.97149 1.43856 1.57841 1.10224 1.23402 1.19558 0.97870 0.90278 0.91218 1.67434 1.15933 1.37477 1.03031 1.22756 1.08511 0.92724 0.99699 1.23520 0.98052 0.95312 0.98784 1.69411 1.14884 1.34029 1.02079 1.19541 0.95652 0.88050 0.94537 1.19655 1.25674 0.97443 1.05106 0.88509 1.27004 0.97215 0.96598 0.99203 1.70220 1.32621 1.06079 1.29034 0.85087 0.77478 0.79128 0.77674 1.16797 1.19405 1.19396 0.92970 0.90504 0.93784 0.92480 0.90469 0.92482 0.93781 0.90502 0.92973 0.94554 0.94554 0.75540 0.82962 0.83818 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.30 71.98 0.60 -2.72 16 2 C -0.08 -1.92 0.78 -52.18 -0.04 -1.96 16 3 C -0.13 -2.61 8.47 71.98 0.61 -2.00 16 4 C -0.14 -3.31 8.30 71.98 0.60 -2.72 16 5 C 0.16 5.39 4.58 86.38 0.40 5.79 16 6 N -0.71 -29.42 5.01 -343.40 -1.72 -31.14 16 7 C 0.26 13.13 7.51 134.04 1.01 14.14 16 8 N -0.52 -26.01 9.71 -190.82 -1.85 -27.86 16 9 C -0.08 -4.03 11.22 84.81 0.95 -3.07 16 10 C 0.00 0.24 11.21 84.89 0.95 1.19 16 11 N -0.49 -28.02 8.03 -188.05 -1.51 -29.53 16 12 C 0.16 8.77 6.56 40.35 0.26 9.04 16 13 C -0.44 -23.17 8.89 23.36 0.21 -22.97 16 14 H 0.10 4.52 6.12 -2.91 -0.02 4.50 16 15 C 0.02 1.07 5.50 85.31 0.47 1.54 16 16 N -0.76 -40.82 11.48 21.86 0.25 -40.57 16 17 Si 0.99 36.76 29.56 68.60 2.03 38.79 16 18 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.19 6.86 -2.39 -0.02 1.17 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.19 6.86 -2.39 -0.02 1.17 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.41 15.87 4.15 -92.70 -0.38 15.48 16 33 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16 34 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 35 H 0.28 13.60 8.29 -92.71 -0.77 12.83 16 Total: -1.00 -64.75 288.12 3.90 -60.85 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.70 Total: 33.21 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.01 Total: -3.74 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -4.83 Total: -129.10 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -64.75 3.90 -60.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161636759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.812 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds