Wall clock time and date at job start Sun Mar 29 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.53006 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46921 * 305.00498 * 4 3 2 6 6 C 1.53002 * 109.47293 * 185.00141 * 4 3 2 7 7 N 1.46507 * 109.46842 * 65.00172 * 4 3 2 8 8 C 1.38821 * 120.00171 * 205.00041 * 7 4 3 9 9 C 1.39965 * 119.96892 * 359.97438 * 8 7 4 10 10 N 1.32126 * 120.31908 * 180.02562 * 9 8 7 11 11 C 1.31933 * 120.27042 * 359.65399 * 10 9 8 12 12 C 1.40682 * 119.93041 * 0.62509 * 11 10 9 13 13 C 1.41269 * 120.15272 * 179.68278 * 12 11 10 14 14 H 1.08001 * 120.00803 * 6.16351 * 13 12 11 15 15 C 1.40055 * 119.99950 * 186.17110 * 13 12 11 16 16 N 1.30738 * 120.00365 * 176.74439 * 15 13 12 17 17 Si 1.86802 * 120.00077 * 356.73919 * 15 13 12 18 18 H 1.48492 * 109.47464 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.46993 * 300.00361 * 17 15 13 20 20 H 1.48503 * 109.47082 * 60.00105 * 17 15 13 21 21 N 1.32230 * 119.97361 * 180.02562 * 8 7 4 22 22 H 1.08994 * 109.47529 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46457 * 299.99999 * 1 2 3 24 24 H 1.08999 * 109.47086 * 59.99536 * 1 2 3 25 25 H 1.09000 * 109.46717 * 240.00485 * 2 1 3 26 26 H 1.08999 * 109.47086 * 120.00464 * 2 1 3 27 27 H 1.09000 * 109.46968 * 60.00639 * 3 2 1 28 28 H 1.08999 * 109.47558 * 300.00175 * 3 2 1 29 29 H 1.08997 * 109.46788 * 180.02562 * 6 4 3 30 30 H 1.08998 * 109.47017 * 300.00233 * 6 4 3 31 31 H 1.08998 * 109.46836 * 60.00231 * 6 4 3 32 32 H 0.97001 * 119.99904 * 25.00086 * 7 4 3 33 33 H 1.08005 * 119.84331 * 0.02562 * 9 8 7 34 34 H 1.08003 * 120.03595 * 180.29933 * 11 10 9 35 35 H 0.96999 * 119.99762 * 355.07952 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0802 2.8795 0.1251 7 7 4.0579 0.8589 -1.2528 8 6 5.3164 0.2754 -1.3028 9 6 6.1191 0.2453 -0.1566 10 7 7.3183 -0.3080 -0.1964 11 6 7.7670 -0.8431 -1.3158 12 6 6.9718 -0.8137 -2.4759 13 6 7.4503 -1.3794 -3.6787 14 1 8.3836 -1.9227 -3.6863 15 6 6.7144 -1.2354 -4.8616 16 7 7.1874 -1.7035 -5.9869 17 14 5.0567 -0.3748 -4.8315 18 1 4.4850 -0.3535 -6.2018 19 1 4.1364 -1.1048 -3.9229 20 1 5.2307 1.0177 -4.3456 21 7 5.7563 -0.2507 -2.4334 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 5.1702 2.8794 0.1242 30 1 3.7165 3.4691 -0.7164 31 1 3.7173 3.3136 1.0567 32 1 3.5013 0.8804 -2.0470 33 1 5.7566 0.6764 0.7650 34 1 8.7459 -1.2986 -1.3428 35 1 8.0782 -2.0864 -6.0166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161719260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:52 Heat of formation + Delta-G solvation = 6.091383 kcal Electronic energy + Delta-G solvation = -16625.905891 eV Core-core repulsion = 14043.290394 eV Total energy + Delta-G solvation = -2582.615497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46087 -37.34205 -34.23559 -33.81363 -32.41036 -30.87421 -28.45593 -26.71748 -25.74539 -22.75322 -22.16688 -21.32774 -20.22566 -18.41742 -16.91501 -16.22448 -15.47068 -14.83912 -14.54612 -14.21538 -13.76995 -13.69201 -13.15353 -12.92776 -12.70154 -12.32028 -12.19091 -12.09628 -11.65108 -11.21344 -11.05732 -11.01426 -10.96117 -10.68139 -10.54017 -10.09857 -9.84770 -9.37776 -9.09754 -8.85353 -7.72734 -7.17033 -6.99878 -4.91485 2.51483 2.78571 3.51899 3.64486 3.73479 3.99144 4.35383 4.62826 4.69622 4.99089 4.99360 5.33032 5.40560 5.51330 5.56800 5.59714 5.71032 5.79385 5.86899 5.89666 5.98442 6.01026 6.08438 6.15933 6.29647 6.33411 6.42520 6.58844 6.81299 7.30336 7.33292 7.63603 7.84859 8.09461 8.29370 8.54169 9.03720 9.49719 9.88184 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.008475 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.836911 B = 3303.150187 C = 3996.855138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.124 4.124 4 C 0.155 3.845 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.726 5.726 8 C 0.407 3.593 9 C -0.168 4.168 10 N -0.396 5.396 11 C -0.096 4.096 12 C 0.239 3.761 13 C -0.455 4.455 14 H 0.088 0.912 15 C 0.043 3.957 16 N -0.795 5.795 17 Si 1.160 2.840 18 H -0.334 1.334 19 H -0.288 1.288 20 H -0.289 1.289 21 N -0.600 5.600 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.394 0.606 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 5.522 8.320 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.162 4.162 4 C 0.049 3.951 5 H 0.099 0.901 6 C -0.227 4.227 7 N -0.361 5.361 8 C 0.166 3.834 9 C -0.329 4.329 10 N -0.107 5.107 11 C -0.266 4.266 12 C 0.114 3.886 13 C -0.488 4.488 14 H 0.106 0.894 15 C -0.180 4.180 16 N -0.416 5.416 17 Si 0.996 3.004 18 H -0.268 1.268 19 H -0.216 1.216 20 H -0.218 1.218 21 N -0.333 5.333 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.475 5.920 7.601 14.983 hybrid contribution 1.366 -0.523 0.587 1.576 sum -10.109 5.397 8.189 14.084 Atomic orbital electron populations 1.21769 0.96094 1.01491 1.01448 1.21541 0.95383 0.96689 1.02858 1.21895 0.94304 0.97437 1.02602 1.20864 0.93073 0.93736 0.87440 0.90115 1.22300 1.02408 0.96672 1.01342 1.44389 1.15532 1.64029 1.12188 1.19108 0.85520 0.87751 0.91030 1.21894 0.94772 1.18830 0.97374 1.67521 1.12226 1.03159 1.27759 1.22782 1.01980 1.11711 0.90163 1.19138 0.86775 0.88368 0.94344 1.20799 1.07370 1.27979 0.92637 0.89375 1.27872 1.06696 0.92731 0.90699 1.70646 1.18030 1.24609 1.28355 0.81711 0.71658 0.76848 0.70230 1.26750 1.21579 1.21769 1.66640 1.17033 1.24789 1.24808 0.92895 0.93010 0.92854 0.91372 0.91982 0.90745 0.91548 0.91865 0.92605 0.92215 0.77135 0.85253 0.84793 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.45 5.82 -26.73 -0.16 -1.61 16 3 C -0.12 -1.33 4.75 -26.73 -0.13 -1.46 16 4 C 0.15 2.09 2.26 -67.92 -0.15 1.94 16 5 H 0.08 1.13 6.46 -51.93 -0.34 0.79 16 6 C -0.17 -2.11 9.41 37.16 0.35 -1.76 16 7 N -0.73 -12.93 4.69 -53.78 -0.25 -13.19 16 8 C 0.41 9.15 7.64 -155.03 -1.19 7.96 16 9 C -0.17 -3.75 10.01 -16.78 -0.17 -3.92 16 10 N -0.40 -9.61 10.47 -12.11 -0.13 -9.74 16 11 C -0.10 -2.39 10.97 -16.59 -0.18 -2.58 16 12 C 0.24 6.33 6.41 -84.84 -0.54 5.79 16 13 C -0.45 -12.25 9.59 -37.75 -0.36 -12.61 16 14 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16 16 N -0.80 -21.30 13.65 55.55 0.76 -20.54 16 17 Si 1.16 28.27 25.46 -169.99 -4.33 23.94 16 18 H -0.33 -8.05 7.11 56.52 0.40 -7.65 16 19 H -0.29 -6.98 6.95 56.52 0.39 -6.59 16 20 H -0.29 -7.10 6.94 56.52 0.39 -6.71 16 21 N -0.60 -15.30 4.76 -10.15 -0.05 -15.35 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.93 7.75 -51.93 -0.40 0.52 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.39 6.90 8.73 -40.82 -0.36 6.54 16 33 H 0.13 2.51 6.07 -52.48 -0.32 2.19 16 34 H 0.13 3.11 8.06 -52.48 -0.42 2.68 16 35 H 0.29 7.26 8.72 -40.82 -0.36 6.91 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -29.16 288.98 -7.11 -36.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.21 Total: 2.51 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.25 Total: -8.26 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.33 Total: -58.81 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: -4.33 Total: 23.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.16 -7.11 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161719260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.357 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds