Wall clock time and date at job start Sun Mar 29 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47044 * 2 1 4 4 C 1.53006 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46921 * 305.00498 * 4 3 2 6 6 C 1.53002 * 109.47293 * 185.00141 * 4 3 2 7 7 N 1.46507 * 109.46842 * 65.00172 * 4 3 2 8 8 C 1.38821 * 120.00171 * 205.00041 * 7 4 3 9 9 C 1.39965 * 119.96892 * 359.97438 * 8 7 4 10 10 N 1.32126 * 120.31908 * 180.02562 * 9 8 7 11 11 C 1.31933 * 120.27042 * 359.65399 * 10 9 8 12 12 C 1.40682 * 119.93041 * 0.62509 * 11 10 9 13 13 C 1.41269 * 120.15272 * 179.68278 * 12 11 10 14 14 H 1.08001 * 120.00803 * 6.16351 * 13 12 11 15 15 C 1.40055 * 119.99950 * 186.17110 * 13 12 11 16 16 N 1.30738 * 120.00365 * 176.74439 * 15 13 12 17 17 Si 1.86802 * 120.00077 * 356.73919 * 15 13 12 18 18 H 1.48492 * 109.47464 * 180.02562 * 17 15 13 19 19 H 1.48507 * 109.46993 * 300.00361 * 17 15 13 20 20 H 1.48503 * 109.47082 * 60.00105 * 17 15 13 21 21 N 1.32230 * 119.97361 * 180.02562 * 8 7 4 22 22 H 1.08994 * 109.47529 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46457 * 299.99999 * 1 2 3 24 24 H 1.08999 * 109.47086 * 59.99536 * 1 2 3 25 25 H 1.09000 * 109.46717 * 240.00485 * 2 1 3 26 26 H 1.08999 * 109.47086 * 120.00464 * 2 1 3 27 27 H 1.09000 * 109.46968 * 60.00639 * 3 2 1 28 28 H 1.08999 * 109.47558 * 300.00175 * 3 2 1 29 29 H 1.08997 * 109.46788 * 180.02562 * 6 4 3 30 30 H 1.08998 * 109.47017 * 300.00233 * 6 4 3 31 31 H 1.08998 * 109.46836 * 60.00231 * 6 4 3 32 32 H 0.97001 * 119.99904 * 25.00086 * 7 4 3 33 33 H 1.08005 * 119.84331 * 0.02562 * 9 8 7 34 34 H 1.08003 * 120.03595 * 180.29933 * 11 10 9 35 35 H 0.96999 * 119.99762 * 355.07952 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0802 2.8795 0.1251 7 7 4.0579 0.8589 -1.2528 8 6 5.3164 0.2754 -1.3028 9 6 6.1191 0.2453 -0.1566 10 7 7.3183 -0.3080 -0.1964 11 6 7.7670 -0.8431 -1.3158 12 6 6.9718 -0.8137 -2.4759 13 6 7.4503 -1.3794 -3.6787 14 1 8.3836 -1.9227 -3.6863 15 6 6.7144 -1.2354 -4.8616 16 7 7.1874 -1.7035 -5.9869 17 14 5.0567 -0.3748 -4.8315 18 1 4.4850 -0.3535 -6.2018 19 1 4.1364 -1.1048 -3.9229 20 1 5.2307 1.0177 -4.3456 21 7 5.7563 -0.2507 -2.4334 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9564 -0.8899 29 1 5.1702 2.8794 0.1242 30 1 3.7165 3.4691 -0.7164 31 1 3.7173 3.3136 1.0567 32 1 3.5013 0.8804 -2.0470 33 1 5.7566 0.6764 0.7650 34 1 8.7459 -1.2986 -1.3428 35 1 8.0782 -2.0864 -6.0166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161719260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:52 Heat of formation + Delta-G solvation = -11.543696 kcal Electronic energy + Delta-G solvation = -16626.670605 eV Core-core repulsion = 14043.290394 eV Total energy + Delta-G solvation = -2583.380211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28075 -38.62187 -36.12706 -35.20466 -34.11123 -32.32570 -30.06453 -27.88476 -27.38096 -24.62134 -23.60430 -22.42704 -21.62621 -20.34309 -18.57373 -17.85922 -17.19774 -16.26298 -15.93038 -15.68483 -15.32731 -15.09636 -14.77122 -14.43851 -14.24070 -13.56972 -13.43559 -13.11754 -12.95952 -12.94115 -12.83337 -12.42840 -12.05139 -11.85455 -11.72666 -11.51857 -11.46701 -11.35293 -11.03277 -10.67020 -9.72977 -9.13323 -8.69496 -6.93371 0.57850 0.87607 1.54419 1.69198 1.97009 2.33063 2.42447 2.64084 3.55605 3.74426 3.99470 4.05828 4.12252 4.16027 4.29173 4.41305 4.52731 4.64892 4.76903 4.80912 4.85494 4.92250 5.00832 5.03804 5.07761 5.28867 5.29874 5.34573 5.39720 5.44713 5.50149 5.83434 5.96755 6.34771 6.40726 6.73936 7.15279 7.59536 7.85791 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.008475 C = 0.007004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.836911 B = 3303.150187 C = 3996.855138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.115 4.115 4 C 0.147 3.853 5 H 0.081 0.919 6 C -0.163 4.163 7 N -0.714 5.714 8 C 0.401 3.599 9 C -0.152 4.152 10 N -0.402 5.402 11 C -0.122 4.122 12 C 0.230 3.770 13 C -0.484 4.484 14 H 0.078 0.922 15 C 0.017 3.983 16 N -0.815 5.815 17 Si 1.194 2.806 18 H -0.330 1.330 19 H -0.289 1.289 20 H -0.293 1.293 21 N -0.618 5.618 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.396 0.604 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 7.150 10.269 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.153 4.153 4 C 0.042 3.958 5 H 0.099 0.901 6 C -0.222 4.222 7 N -0.348 5.348 8 C 0.158 3.842 9 C -0.314 4.314 10 N -0.113 5.113 11 C -0.290 4.290 12 C 0.104 3.896 13 C -0.518 4.518 14 H 0.096 0.904 15 C -0.201 4.201 16 N -0.437 5.437 17 Si 1.028 2.972 18 H -0.264 1.264 19 H -0.217 1.217 20 H -0.222 1.222 21 N -0.352 5.352 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.231 0.769 33 H 0.181 0.819 34 H 0.159 0.841 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.688 7.547 9.554 18.319 hybrid contribution 1.934 -0.925 0.217 2.154 sum -11.755 6.622 9.771 16.658 Atomic orbital electron populations 1.21737 0.94540 1.01753 1.02431 1.21537 0.96803 0.96935 1.01376 1.21871 0.91774 0.97232 1.04397 1.21248 0.95148 0.94109 0.85251 0.90106 1.22252 1.00828 0.95835 1.03269 1.44704 1.13620 1.62484 1.14015 1.19444 0.87158 0.87291 0.90306 1.22513 0.93841 1.16608 0.98484 1.67570 1.13101 1.03265 1.27373 1.22842 1.02638 1.13285 0.90217 1.19254 0.87432 0.88360 0.94549 1.20791 1.07760 1.29779 0.93424 0.90359 1.28532 1.08147 0.92861 0.90599 1.70652 1.18431 1.26126 1.28508 0.81241 0.69907 0.75931 0.70094 1.26379 1.21708 1.22161 1.66625 1.16856 1.25386 1.26359 0.93111 0.91337 0.92529 0.94135 0.92238 0.87717 0.90883 0.94190 0.92369 0.88925 0.76877 0.81916 0.84063 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.13 -2.58 5.82 30.60 0.18 -2.41 16 3 C -0.12 -1.99 4.75 30.60 0.15 -1.85 16 4 C 0.15 3.43 2.26 44.99 0.10 3.53 16 5 H 0.08 1.93 6.46 -2.39 -0.02 1.92 16 6 C -0.16 -3.44 9.41 71.98 0.68 -2.76 16 7 N -0.71 -23.73 4.69 -324.07 -1.52 -25.26 16 8 C 0.40 17.34 7.64 133.38 1.02 18.36 16 9 C -0.15 -6.41 10.01 85.07 0.85 -5.56 16 10 N -0.40 -19.02 10.47 -192.22 -2.01 -21.04 16 11 C -0.12 -6.16 10.97 85.27 0.94 -5.22 16 12 C 0.23 12.32 6.41 40.15 0.26 12.58 16 13 C -0.48 -26.83 9.59 23.46 0.22 -26.60 16 14 H 0.08 4.33 8.06 -2.91 -0.02 4.31 16 15 C 0.02 0.96 5.52 85.30 0.47 1.43 16 16 N -0.81 -44.53 13.65 21.84 0.30 -44.24 16 17 Si 1.19 57.67 25.46 68.60 1.75 59.41 16 18 H -0.33 -15.55 7.11 99.48 0.71 -14.84 16 19 H -0.29 -13.81 6.95 99.48 0.69 -13.12 16 20 H -0.29 -14.14 6.94 99.48 0.69 -13.45 16 21 N -0.62 -31.20 4.76 -186.01 -0.88 -32.08 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.04 1.03 7.75 -2.39 -0.02 1.01 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.03 7.67 -2.39 -0.02 1.02 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.40 13.02 8.73 -92.71 -0.81 12.21 16 33 H 0.16 5.72 6.07 -2.91 -0.02 5.70 16 34 H 0.14 6.69 8.06 -2.91 -0.02 6.67 16 35 H 0.29 15.00 8.72 -92.71 -0.81 14.19 16 Total: -1.00 -62.42 288.98 3.40 -59.02 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.20 Total: 14.33 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 5.58 Total: -10.16 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -4.12 Total: -122.61 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.75 Total: 59.41 kcal Total: -62.42 3.40 -59.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161719260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.478 kcal (2) G-P(sol) polarization free energy of solvation -62.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds