Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38691 * 119.27701 * 2 1 4 4 C 1.38003 * 119.62512 * 179.72939 * 3 2 1 5 5 C 1.41000 * 118.28271 * 0.52738 * 4 3 2 6 6 C 1.41022 * 120.70357 * 179.71082 * 5 4 3 7 7 H 1.08004 * 119.99551 * 152.97871 * 6 5 4 8 8 C 1.39942 * 120.00277 * 332.97706 * 6 5 4 9 9 N 1.30871 * 119.99870 * 348.09468 * 8 6 5 10 10 Si 1.86805 * 120.00254 * 168.10295 * 8 6 5 11 11 H 1.48502 * 109.46674 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47186 * 119.99638 * 10 8 6 13 13 H 1.48497 * 109.46958 * 240.00224 * 10 8 6 14 14 C 1.41705 * 118.59137 * 359.73977 * 5 4 3 15 15 N 1.38085 * 119.90727 * 179.97438 * 14 5 4 16 16 C 1.46901 * 111.00098 * 115.64023 * 15 14 5 17 17 C 1.46900 * 111.00065 * 239.58739 * 15 14 5 18 18 C 1.52996 * 109.47137 * 169.99753 * 17 15 14 19 19 N 1.46907 * 109.47210 * 180.02562 * 18 17 15 20 20 N 1.31964 * 119.27892 * 180.27234 * 2 1 3 21 21 H 1.08994 * 109.47010 * 269.72858 * 1 2 3 22 22 H 1.09000 * 109.46931 * 149.72836 * 1 2 3 23 23 H 1.09002 * 109.47164 * 29.72838 * 1 2 3 24 24 H 1.08000 * 120.18224 * 359.97438 * 3 2 1 25 25 H 1.08000 * 120.85454 * 180.24742 * 4 3 2 26 26 H 0.97000 * 120.00149 * 179.97438 * 9 8 6 27 27 H 1.08993 * 109.47443 * 66.75164 * 16 15 14 28 28 H 1.09002 * 109.47120 * 186.75753 * 16 15 14 29 29 H 1.09001 * 109.46878 * 306.74925 * 16 15 14 30 30 H 1.08994 * 109.47524 * 290.00421 * 17 15 14 31 31 H 1.09008 * 109.46589 * 50.00101 * 17 15 14 32 32 H 1.08998 * 109.47591 * 300.00236 * 18 17 15 33 33 H 1.09008 * 109.47097 * 60.00659 * 18 17 15 34 34 H 1.00901 * 110.99941 * 56.04405 * 19 18 17 35 35 H 1.00888 * 111.00009 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2098 0.0000 4 6 3.5653 1.2181 0.0057 5 6 4.2409 -0.0194 -0.0001 6 6 5.6502 -0.0704 -0.0009 7 1 6.1599 -0.9245 0.4201 8 6 6.3883 0.9857 -0.5470 9 7 5.7875 1.9037 -1.2604 10 14 8.2312 1.0848 -0.2581 11 1 8.6642 -0.0657 0.5751 12 1 8.9396 1.0463 -1.5626 13 1 8.5547 2.3530 0.4437 14 6 3.4738 -1.2108 -0.0058 15 7 4.1075 -2.4377 -0.0121 16 6 3.8222 -3.1839 1.2207 17 6 3.7319 -3.2182 -1.1986 18 6 4.6311 -4.4515 -1.3034 19 7 4.2559 -5.2317 -2.4902 20 7 2.1524 -1.1510 -0.0055 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6365 2.1399 -0.0004 25 1 4.1135 2.1486 0.0098 26 1 6.2991 2.6360 -1.6387 27 1 2.7656 -3.4502 1.2480 28 1 4.4262 -4.0909 1.2444 29 1 4.0632 -2.5643 2.0845 30 1 2.6920 -3.5329 -1.1122 31 1 3.8526 -2.6036 -2.0908 32 1 5.6711 -4.1367 -1.3898 33 1 4.5104 -5.0661 -0.4111 34 1 4.2977 -4.6646 -3.3238 35 1 4.8355 -6.0524 -2.5815 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163690453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = 30.819583 kcal Electronic energy + Delta-G solvation = -16787.425519 eV Core-core repulsion = 14205.882317 eV Total energy + Delta-G solvation = -2581.543202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.96134 -36.47288 -34.19742 -33.79660 -30.92328 -29.99924 -27.76805 -27.23234 -25.35977 -23.60214 -21.49675 -20.52469 -19.84341 -17.27078 -16.13041 -15.61073 -15.35183 -14.99093 -14.37500 -13.93166 -13.54409 -13.23255 -12.89897 -12.75927 -12.49641 -11.90138 -11.70018 -11.49283 -11.46394 -11.36581 -10.98931 -10.92075 -10.86027 -10.48187 -10.36290 -9.77309 -9.35672 -8.50085 -8.36491 -8.11577 -7.47457 -7.35703 -6.78647 -4.38867 2.56839 2.89432 3.04340 3.10827 3.17604 3.88808 4.51884 4.60419 5.18859 5.45526 5.56555 5.71174 5.77572 6.05841 6.07329 6.10064 6.24577 6.34304 6.39776 6.46247 6.51020 6.56362 6.63495 6.89286 6.97961 7.12057 7.19105 7.29129 7.58241 7.63309 7.72700 7.88763 8.02907 8.32216 8.62413 8.72345 8.95257 9.61183 10.10816 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.011165 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.178698 B = 2507.254193 C = 3839.938119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.147 4.147 4 C -0.132 4.132 5 C 0.090 3.910 6 C -0.415 4.415 7 H 0.091 0.909 8 C 0.067 3.933 9 N -0.797 5.797 10 Si 0.914 3.086 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.273 1.273 14 C 0.158 3.842 15 N -0.456 5.456 16 C 0.035 3.965 17 C 0.072 3.928 18 C 0.063 3.937 19 N -0.853 5.853 20 N -0.488 5.488 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.130 0.870 26 H 0.281 0.719 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.339 0.661 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -4.612 0.278 4.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C -0.168 4.168 4 C -0.159 4.159 5 C 0.084 3.916 6 C -0.445 4.445 7 H 0.109 0.891 8 C -0.150 4.150 9 N -0.423 5.423 10 Si 0.738 3.262 11 H -0.182 1.182 12 H -0.200 1.200 13 H -0.198 1.198 14 C -0.074 4.074 15 N -0.178 5.178 16 C -0.113 4.113 17 C -0.056 4.056 18 C -0.068 4.068 19 N -0.382 5.382 20 N -0.200 5.200 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.599 -5.162 0.484 5.220 hybrid contribution 1.436 1.066 -0.317 1.816 sum 0.837 -4.097 0.167 4.185 Atomic orbital electron populations 1.20274 0.91866 1.00705 1.00211 1.20035 0.94483 0.88333 1.11894 1.21442 0.95413 0.96892 1.03004 1.21705 0.92301 0.98909 1.02957 1.18116 0.94222 0.89779 0.89476 1.19563 0.90875 1.02769 1.31249 0.89105 1.26065 1.01570 0.94423 0.92969 1.69811 1.38430 1.10428 1.23588 0.86162 0.81647 0.79316 0.79068 1.18177 1.20012 1.19824 1.19359 0.86243 0.89916 1.11898 1.59411 1.55543 1.01426 1.01379 1.22313 0.98644 0.97461 0.92922 1.21871 0.96985 0.92968 0.93766 1.21807 0.97496 0.94547 0.92913 1.58671 1.61889 1.11388 1.06274 1.66770 1.11224 1.30288 1.11696 0.93391 0.92871 0.93002 0.88449 0.85209 0.90835 0.95518 0.92524 0.92251 0.93966 0.91764 0.94677 0.91398 0.84872 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.15 36.01 0.37 -0.99 16 2 C -0.01 -0.16 6.79 -82.37 -0.56 -0.72 16 3 C -0.15 -3.45 9.69 -39.50 -0.38 -3.84 16 4 C -0.13 -3.40 8.77 -38.62 -0.34 -3.73 16 5 C 0.09 2.38 5.59 -106.47 -0.60 1.78 16 6 C -0.41 -10.71 8.69 -37.89 -0.33 -11.04 16 7 H 0.09 2.32 7.62 -52.48 -0.40 1.92 16 8 C 0.07 1.63 5.26 -17.32 -0.09 1.54 16 9 N -0.80 -19.97 10.83 55.55 0.60 -19.37 16 10 Si 0.91 18.33 29.58 -169.99 -5.03 13.30 16 11 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 14 C 0.16 3.95 5.28 -155.03 -0.82 3.13 16 15 N -0.46 -10.05 3.96 -180.53 -0.71 -10.76 16 16 C 0.03 0.67 9.09 60.07 0.55 1.21 16 17 C 0.07 1.44 4.94 -3.83 -0.02 1.42 16 18 C 0.06 1.02 6.71 -3.82 -0.03 0.99 16 19 N -0.85 -11.76 9.62 -10.36 -0.10 -11.86 16 20 N -0.49 -12.04 9.68 -8.11 -0.08 -12.12 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 24 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 25 H 0.13 3.37 6.23 -52.49 -0.33 3.05 16 26 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 27 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.06 0.93 6.60 -51.93 -0.34 0.59 16 29 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 30 H 0.04 0.89 8.05 -51.93 -0.42 0.48 16 31 H 0.06 1.39 8.05 -51.92 -0.42 0.97 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.05 6.61 -51.92 -0.34 0.71 16 34 H 0.34 4.45 8.99 -39.29 -0.35 4.10 16 35 H 0.34 3.76 9.08 -39.30 -0.36 3.40 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -27.99 292.19 -8.21 -36.19 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.04 Total: 10.45 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.25 Total: -10.24 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.29 Total: -54.11 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.99 -8.21 -36.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163690453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.014 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds