Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38691 * 119.27701 * 2 1 4 4 C 1.38003 * 119.62512 * 179.72939 * 3 2 1 5 5 C 1.41000 * 118.28271 * 0.52738 * 4 3 2 6 6 C 1.41022 * 120.70357 * 179.71082 * 5 4 3 7 7 H 1.08004 * 119.99551 * 152.97871 * 6 5 4 8 8 C 1.39942 * 120.00277 * 332.97706 * 6 5 4 9 9 N 1.30871 * 119.99870 * 348.09468 * 8 6 5 10 10 Si 1.86805 * 120.00254 * 168.10295 * 8 6 5 11 11 H 1.48502 * 109.46674 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47186 * 119.99638 * 10 8 6 13 13 H 1.48497 * 109.46958 * 240.00224 * 10 8 6 14 14 C 1.41705 * 118.59137 * 359.73977 * 5 4 3 15 15 N 1.38085 * 119.90727 * 179.97438 * 14 5 4 16 16 C 1.46901 * 111.00098 * 115.64023 * 15 14 5 17 17 C 1.46900 * 111.00065 * 239.58739 * 15 14 5 18 18 C 1.52996 * 109.47137 * 169.99753 * 17 15 14 19 19 N 1.46907 * 109.47210 * 180.02562 * 18 17 15 20 20 N 1.31964 * 119.27892 * 180.27234 * 2 1 3 21 21 H 1.08994 * 109.47010 * 269.72858 * 1 2 3 22 22 H 1.09000 * 109.46931 * 149.72836 * 1 2 3 23 23 H 1.09002 * 109.47164 * 29.72838 * 1 2 3 24 24 H 1.08000 * 120.18224 * 359.97438 * 3 2 1 25 25 H 1.08000 * 120.85454 * 180.24742 * 4 3 2 26 26 H 0.97000 * 120.00149 * 179.97438 * 9 8 6 27 27 H 1.08993 * 109.47443 * 66.75164 * 16 15 14 28 28 H 1.09002 * 109.47120 * 186.75753 * 16 15 14 29 29 H 1.09001 * 109.46878 * 306.74925 * 16 15 14 30 30 H 1.08994 * 109.47524 * 290.00421 * 17 15 14 31 31 H 1.09008 * 109.46589 * 50.00101 * 17 15 14 32 32 H 1.08998 * 109.47591 * 300.00236 * 18 17 15 33 33 H 1.09008 * 109.47097 * 60.00659 * 18 17 15 34 34 H 1.00901 * 110.99941 * 56.04405 * 19 18 17 35 35 H 1.00888 * 111.00009 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2098 0.0000 4 6 3.5653 1.2181 0.0057 5 6 4.2409 -0.0194 -0.0001 6 6 5.6502 -0.0704 -0.0009 7 1 6.1599 -0.9245 0.4201 8 6 6.3883 0.9857 -0.5470 9 7 5.7875 1.9037 -1.2604 10 14 8.2312 1.0848 -0.2581 11 1 8.6642 -0.0657 0.5751 12 1 8.9396 1.0463 -1.5626 13 1 8.5547 2.3530 0.4437 14 6 3.4738 -1.2108 -0.0058 15 7 4.1075 -2.4377 -0.0121 16 6 3.8222 -3.1839 1.2207 17 6 3.7319 -3.2182 -1.1986 18 6 4.6311 -4.4515 -1.3034 19 7 4.2559 -5.2317 -2.4902 20 7 2.1524 -1.1510 -0.0055 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8924 -0.5096 24 1 1.6365 2.1399 -0.0004 25 1 4.1135 2.1486 0.0098 26 1 6.2991 2.6360 -1.6387 27 1 2.7656 -3.4502 1.2480 28 1 4.4262 -4.0909 1.2444 29 1 4.0632 -2.5643 2.0845 30 1 2.6920 -3.5329 -1.1122 31 1 3.8526 -2.6036 -2.0908 32 1 5.6711 -4.1367 -1.3898 33 1 4.5104 -5.0661 -0.4111 34 1 4.2977 -4.6646 -3.3238 35 1 4.8355 -6.0524 -2.5815 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163690453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = 11.978010 kcal Electronic energy + Delta-G solvation = -16788.242550 eV Core-core repulsion = 14205.882317 eV Total energy + Delta-G solvation = -2582.360234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77462 -38.11762 -36.04657 -35.16555 -32.74132 -31.76999 -29.51642 -28.73424 -27.01545 -25.34330 -23.16390 -22.29325 -21.54536 -19.16413 -17.72469 -17.39442 -16.76629 -16.59087 -16.07876 -15.65515 -15.08742 -14.73076 -14.52825 -14.26486 -14.16576 -13.60189 -13.35564 -13.16084 -13.03887 -12.98609 -12.64326 -12.61126 -12.48702 -12.13977 -11.89852 -11.59249 -11.16402 -10.22698 -10.02014 -9.65369 -9.26215 -9.18568 -8.61212 -6.31667 0.73106 1.02937 1.40111 1.51307 1.55276 2.21443 2.74076 3.02017 3.61742 3.88344 4.05246 4.09878 4.29163 4.44169 4.51655 4.61623 4.63688 4.72279 4.87147 4.93613 4.95392 5.01658 5.07959 5.11382 5.20455 5.31296 5.34448 5.76364 5.84263 6.08143 6.15095 6.30893 6.41093 6.60368 6.72443 6.82680 7.08709 7.72380 8.30737 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.011165 C = 0.007290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.178698 B = 2507.254193 C = 3839.938119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.016 4.016 3 C -0.152 4.152 4 C -0.154 4.154 5 C 0.058 3.942 6 C -0.441 4.441 7 H 0.084 0.916 8 C 0.029 3.971 9 N -0.827 5.827 10 Si 0.985 3.015 11 H -0.257 1.257 12 H -0.268 1.268 13 H -0.265 1.265 14 C 0.149 3.851 15 N -0.467 5.467 16 C 0.041 3.959 17 C 0.082 3.918 18 C 0.077 3.923 19 N -0.853 5.853 20 N -0.503 5.503 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.119 0.881 26 H 0.289 0.711 27 H 0.020 0.980 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.343 0.657 35 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -5.311 0.374 5.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.157 4.157 3 C -0.172 4.172 4 C -0.180 4.180 5 C 0.052 3.948 6 C -0.470 4.470 7 H 0.103 0.897 8 C -0.185 4.185 9 N -0.453 5.453 10 Si 0.806 3.194 11 H -0.180 1.180 12 H -0.193 1.193 13 H -0.189 1.189 14 C -0.083 4.083 15 N -0.190 5.190 16 C -0.107 4.107 17 C -0.046 4.046 18 C -0.054 4.054 19 N -0.384 5.384 20 N -0.215 5.215 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.144 0.856 25 H 0.137 0.863 26 H 0.100 0.900 27 H 0.039 0.961 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.386 -5.881 0.575 5.922 hybrid contribution 1.244 1.273 -0.368 1.818 sum 0.858 -4.608 0.207 4.692 Atomic orbital electron populations 1.20323 0.88387 1.02024 1.01746 1.20871 0.96920 0.87908 1.09964 1.21750 0.94820 0.98407 1.02203 1.21744 0.93437 0.98432 1.04400 1.18492 0.95101 0.90690 0.90542 1.19653 0.91044 1.03623 1.32714 0.89743 1.26862 1.06030 0.93570 0.92062 1.69854 1.40352 1.11025 1.24040 0.85096 0.75754 0.79452 0.79081 1.18013 1.19317 1.18921 1.19665 0.86545 0.90899 1.11152 1.59424 1.55473 1.01159 1.02909 1.22310 0.98878 0.98127 0.91361 1.21782 0.97108 0.93744 0.91983 1.21595 0.96172 0.93148 0.94463 1.58611 1.62356 1.11790 1.05678 1.66920 1.11156 1.31012 1.12398 0.91610 0.92679 0.90573 0.85634 0.86332 0.90043 0.96109 0.89278 0.93228 0.95401 0.94350 0.94930 0.90183 0.84426 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.35 10.15 71.24 0.72 -1.63 16 2 C -0.02 -0.75 6.79 42.65 0.29 -0.46 16 3 C -0.15 -7.09 9.69 22.32 0.22 -6.88 16 4 C -0.15 -8.07 8.77 22.89 0.20 -7.87 16 5 C 0.06 3.13 5.59 -21.06 -0.12 3.01 16 6 C -0.44 -23.32 8.69 23.37 0.20 -23.11 16 7 H 0.08 4.42 7.62 -2.91 -0.02 4.40 16 8 C 0.03 1.43 5.26 85.25 0.45 1.88 16 9 N -0.83 -42.11 10.83 21.83 0.24 -41.87 16 10 Si 0.99 37.53 29.58 68.60 2.03 39.56 16 11 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 12 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 13 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 14 C 0.15 7.60 5.28 134.05 0.71 8.31 16 15 N -0.47 -20.75 3.96 -725.07 -2.87 -23.62 16 16 C 0.04 1.55 9.09 127.69 1.16 2.71 16 17 C 0.08 3.28 4.94 86.30 0.43 3.71 16 18 C 0.08 2.39 6.71 86.30 0.58 2.97 16 19 N -0.85 -21.99 9.62 -186.70 -1.80 -23.78 16 20 N -0.50 -24.91 9.68 -179.57 -1.74 -26.65 16 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 24 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 25 H 0.12 6.37 6.23 -2.91 -0.02 6.35 16 26 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 27 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 28 H 0.09 2.76 6.60 -2.39 -0.02 2.74 16 29 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 30 H 0.03 1.18 8.05 -2.39 -0.02 1.16 16 31 H 0.04 1.70 8.05 -2.38 -0.02 1.68 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 2.29 6.61 -2.38 -0.02 2.27 16 34 H 0.34 8.57 8.99 -89.69 -0.81 7.76 16 35 H 0.36 7.05 9.08 -89.70 -0.81 6.24 16 Total: -1.00 -60.91 292.19 0.18 -60.73 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.52 Total: 33.00 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.84 Total: -17.36 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -6.17 Total: -115.93 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -60.91 0.18 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163690453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.710 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds