Wall clock time and date at job start Sun Mar 29 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31478 * 119.81950 * 2 1 4 4 C 1.32739 * 121.73384 * 180.02562 * 3 2 1 5 5 N 1.38367 * 119.43306 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00317 * 184.99952 * 5 4 3 7 7 C 1.46502 * 119.99852 * 5.00116 * 5 4 3 8 8 C 1.52998 * 109.47505 * 89.99732 * 7 5 4 9 9 N 1.46902 * 109.47267 * 179.97438 * 8 7 5 10 10 C 1.39711 * 121.14071 * 0.02562 * 4 3 2 11 11 C 1.36559 * 119.49193 * 359.95819 * 10 4 3 12 12 C 1.40764 * 119.81468 * 180.02562 * 2 1 3 13 13 C 1.41203 * 120.56907 * 359.70692 * 12 2 1 14 14 H 1.07996 * 119.99826 * 334.87335 * 13 12 2 15 15 C 1.39873 * 119.99948 * 154.87638 * 13 12 2 16 16 N 1.30906 * 119.99751 * 344.00717 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 164.00571 * 15 13 12 18 18 H 1.48502 * 109.47224 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46962 * 120.00011 * 17 15 13 20 20 H 1.48501 * 109.46945 * 240.00332 * 17 15 13 21 21 H 1.09011 * 109.47164 * 269.97895 * 1 2 3 22 22 H 1.08998 * 109.47438 * 29.98103 * 1 2 3 23 23 H 1.09002 * 109.47551 * 149.98142 * 1 2 3 24 24 H 1.08995 * 109.47452 * 90.00425 * 6 5 4 25 25 H 1.09007 * 109.47197 * 210.00051 * 6 5 4 26 26 H 1.09001 * 109.46929 * 329.99728 * 6 5 4 27 27 H 1.09004 * 109.46965 * 210.00226 * 7 5 4 28 28 H 1.09006 * 109.47120 * 329.99422 * 7 5 4 29 29 H 1.08992 * 109.46981 * 300.00300 * 8 7 5 30 30 H 1.09002 * 109.46699 * 60.00513 * 8 7 5 31 31 H 1.00903 * 110.99781 * 179.97438 * 9 8 7 32 32 H 1.00901 * 111.00191 * 303.95425 * 9 8 7 33 33 H 1.07998 * 120.25402 * 179.97438 * 10 4 3 34 34 H 1.07992 * 120.79517 * 180.02562 * 11 10 4 35 35 H 0.96996 * 119.99679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1407 0.0000 4 6 3.4874 1.1850 -0.0005 5 7 4.1267 2.4122 -0.0010 6 6 5.5860 2.4779 -0.1121 7 6 3.3442 3.6458 0.1096 8 6 3.1838 4.0175 1.5850 9 7 2.3997 5.2548 1.6959 10 6 4.2494 0.0141 -0.0016 11 6 3.6199 -1.1978 -0.0013 12 6 2.2068 -1.2213 -0.0005 13 6 1.5090 -2.4489 0.0051 14 1 0.5078 -2.4990 0.4068 15 6 2.1146 -3.5999 -0.5095 16 7 3.1757 -3.4974 -1.2692 17 14 1.4092 -5.2834 -0.1125 18 1 0.2167 -5.1276 0.7587 19 1 1.0158 -5.9648 -1.3720 20 1 2.4339 -6.0961 0.5908 21 1 -0.3634 -0.0004 1.0278 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 5.8681 2.5354 -1.1634 25 1 5.9508 3.3620 0.4108 26 1 6.0248 1.5852 0.3336 27 1 3.8595 4.4510 -0.4141 28 1 2.3610 3.4936 -0.3358 29 1 2.6686 3.2123 2.1086 30 1 4.1670 4.1698 2.0303 31 1 2.2794 5.5213 2.6616 32 1 2.8239 6.0005 1.1648 33 1 5.3281 0.0668 -0.0024 34 1 4.1882 -2.1161 -0.0017 35 1 3.5958 -4.2956 -1.6257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163690838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:28 Heat of formation + Delta-G solvation = 35.229471 kcal Electronic energy + Delta-G solvation = -16528.392963 eV Core-core repulsion = 13947.040988 eV Total energy + Delta-G solvation = -2581.351974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.80665 -36.44587 -34.19540 -33.43373 -31.20885 -30.25495 -28.14650 -26.61540 -25.75901 -23.69190 -21.90981 -20.33761 -19.82559 -17.14312 -16.39317 -15.91206 -15.25410 -14.93656 -14.34888 -13.94433 -13.73340 -13.28225 -12.91196 -12.77556 -12.71096 -11.84211 -11.69259 -11.54302 -11.40376 -11.26267 -11.12098 -11.03861 -10.80272 -10.62242 -10.49224 -9.63586 -9.31880 -8.62259 -8.41355 -8.08209 -7.89652 -6.75338 -6.51297 -4.14496 2.75189 3.00221 3.10924 3.16255 3.31004 3.85159 3.98655 4.71552 4.88466 5.34999 5.52259 5.53549 5.68025 5.78316 5.87145 6.00602 6.12284 6.29687 6.42565 6.49781 6.57409 6.70484 6.74911 6.86259 7.08650 7.19196 7.25540 7.44349 7.49323 7.52302 7.71963 7.94691 8.21728 8.41942 8.65218 8.88447 8.94026 9.78039 10.26998 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038905 B = 0.006441 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.522375 B = 4346.159277 C = 4880.096825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 N -0.511 5.511 4 C 0.282 3.718 5 N -0.628 5.628 6 C 0.111 3.889 7 C 0.146 3.854 8 C 0.048 3.952 9 N -0.847 5.847 10 C -0.208 4.208 11 C -0.092 4.092 12 C 0.034 3.966 13 C -0.452 4.452 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.807 5.807 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.015 0.985 31 H 0.338 0.662 32 H 0.334 0.666 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 7.845 3.049 8.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 N -0.226 5.226 4 C 0.051 3.949 5 N -0.349 5.349 6 C -0.033 4.033 7 C 0.021 3.979 8 C -0.084 4.084 9 N -0.376 5.376 10 C -0.231 4.231 11 C -0.119 4.119 12 C 0.029 3.971 13 C -0.483 4.483 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.434 5.434 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.199 1.199 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.033 0.967 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.883 8.108 2.551 8.706 hybrid contribution 1.345 -1.216 0.554 1.896 sum 3.228 6.891 3.105 8.219 Atomic orbital electron populations 1.20240 0.91202 1.01058 1.00215 1.20762 0.94721 0.87401 1.07364 1.66330 1.07201 1.30969 1.18150 1.17651 0.88448 0.84275 1.04543 1.45380 1.03811 1.02540 1.83196 1.21362 0.80972 1.01232 0.99762 1.20914 0.97572 0.85548 0.93915 1.22270 0.94433 0.92292 0.99417 1.58601 1.55956 1.06651 1.16414 1.20850 0.98283 0.92814 1.11198 1.21269 0.94892 0.96069 0.99654 1.18189 0.92202 0.93134 0.93583 1.19381 1.01652 0.91913 1.35388 0.90172 1.25863 0.94421 1.01233 0.92766 1.69830 1.18564 1.31195 1.23820 0.86293 0.79973 0.81530 0.79102 1.18445 1.20154 1.19941 0.93473 0.93384 0.91419 0.94715 0.93116 0.91779 0.93359 0.89314 0.90638 0.96699 0.85056 0.85453 0.88343 0.85545 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.57 36.00 0.34 -1.17 16 2 C 0.04 0.93 6.86 -81.79 -0.56 0.36 16 3 N -0.51 -12.64 8.94 -8.05 -0.07 -12.72 16 4 C 0.28 6.57 7.37 -155.13 -1.14 5.43 16 5 N -0.63 -11.98 2.97 -181.64 -0.54 -12.52 16 6 C 0.11 1.69 10.26 59.85 0.61 2.30 16 7 C 0.15 2.47 5.72 -4.04 -0.02 2.44 16 8 C 0.05 0.74 7.11 -3.82 -0.03 0.71 16 9 N -0.85 -10.76 9.62 -10.37 -0.10 -10.86 16 10 C -0.21 -4.92 9.19 -39.64 -0.36 -5.29 16 11 C -0.09 -2.40 8.74 -39.01 -0.34 -2.74 16 12 C 0.03 0.91 5.58 -106.64 -0.59 0.31 16 13 C -0.45 -11.84 8.14 -37.85 -0.31 -12.15 16 14 H 0.08 2.01 6.87 -52.49 -0.36 1.65 16 15 C 0.07 1.82 5.19 -17.33 -0.09 1.73 16 16 N -0.81 -20.88 10.94 55.54 0.61 -20.27 16 17 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.07 1.45 6.77 -51.93 -0.35 1.10 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 26 H 0.06 0.98 5.94 -51.93 -0.31 0.67 16 27 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.09 1.75 7.27 -51.93 -0.38 1.37 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.34 3.62 9.08 -39.29 -0.36 3.27 16 32 H 0.33 3.51 8.99 -39.29 -0.35 3.16 16 33 H 0.10 2.06 5.97 -52.49 -0.31 1.75 16 34 H 0.13 3.36 6.25 -52.49 -0.33 3.03 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -29.00 289.39 -8.10 -37.10 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.84 Total: 9.30 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.49 Total: -8.05 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.10 Total: -56.38 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.00 -8.10 -37.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163690838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.327 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds