Wall clock time and date at job start Sun Mar 29 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31478 * 119.81950 * 2 1 4 4 C 1.32739 * 121.73384 * 180.02562 * 3 2 1 5 5 N 1.38367 * 119.43306 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00317 * 184.99952 * 5 4 3 7 7 C 1.46502 * 119.99852 * 5.00116 * 5 4 3 8 8 C 1.52998 * 109.47505 * 89.99732 * 7 5 4 9 9 N 1.46902 * 109.47267 * 179.97438 * 8 7 5 10 10 C 1.39711 * 121.14071 * 0.02562 * 4 3 2 11 11 C 1.36559 * 119.49193 * 359.95819 * 10 4 3 12 12 C 1.40764 * 119.81468 * 180.02562 * 2 1 3 13 13 C 1.41203 * 120.56907 * 359.70692 * 12 2 1 14 14 H 1.07996 * 119.99826 * 334.87335 * 13 12 2 15 15 C 1.39873 * 119.99948 * 154.87638 * 13 12 2 16 16 N 1.30906 * 119.99751 * 344.00717 * 15 13 12 17 17 Si 1.86797 * 120.00021 * 164.00571 * 15 13 12 18 18 H 1.48502 * 109.47224 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46962 * 120.00011 * 17 15 13 20 20 H 1.48501 * 109.46945 * 240.00332 * 17 15 13 21 21 H 1.09011 * 109.47164 * 269.97895 * 1 2 3 22 22 H 1.08998 * 109.47438 * 29.98103 * 1 2 3 23 23 H 1.09002 * 109.47551 * 149.98142 * 1 2 3 24 24 H 1.08995 * 109.47452 * 90.00425 * 6 5 4 25 25 H 1.09007 * 109.47197 * 210.00051 * 6 5 4 26 26 H 1.09001 * 109.46929 * 329.99728 * 6 5 4 27 27 H 1.09004 * 109.46965 * 210.00226 * 7 5 4 28 28 H 1.09006 * 109.47120 * 329.99422 * 7 5 4 29 29 H 1.08992 * 109.46981 * 300.00300 * 8 7 5 30 30 H 1.09002 * 109.46699 * 60.00513 * 8 7 5 31 31 H 1.00903 * 110.99781 * 179.97438 * 9 8 7 32 32 H 1.00901 * 111.00191 * 303.95425 * 9 8 7 33 33 H 1.07998 * 120.25402 * 179.97438 * 10 4 3 34 34 H 1.07992 * 120.79517 * 180.02562 * 11 10 4 35 35 H 0.96996 * 119.99679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1407 0.0000 4 6 3.4874 1.1850 -0.0005 5 7 4.1267 2.4122 -0.0010 6 6 5.5860 2.4779 -0.1121 7 6 3.3442 3.6458 0.1096 8 6 3.1838 4.0175 1.5850 9 7 2.3997 5.2548 1.6959 10 6 4.2494 0.0141 -0.0016 11 6 3.6199 -1.1978 -0.0013 12 6 2.2068 -1.2213 -0.0005 13 6 1.5090 -2.4489 0.0051 14 1 0.5078 -2.4990 0.4068 15 6 2.1146 -3.5999 -0.5095 16 7 3.1757 -3.4974 -1.2692 17 14 1.4092 -5.2834 -0.1125 18 1 0.2167 -5.1276 0.7587 19 1 1.0158 -5.9648 -1.3720 20 1 2.4339 -6.0961 0.5908 21 1 -0.3634 -0.0004 1.0278 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 5.8681 2.5354 -1.1634 25 1 5.9508 3.3620 0.4108 26 1 6.0248 1.5852 0.3336 27 1 3.8595 4.4510 -0.4141 28 1 2.3610 3.4936 -0.3358 29 1 2.6686 3.2123 2.1086 30 1 4.1670 4.1698 2.0303 31 1 2.2794 5.5213 2.6616 32 1 2.8239 6.0005 1.1648 33 1 5.3281 0.0668 -0.0024 34 1 4.1882 -2.1161 -0.0017 35 1 3.5958 -4.2956 -1.6257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163690838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:28 Heat of formation + Delta-G solvation = 16.485755 kcal Electronic energy + Delta-G solvation = -16529.205751 eV Core-core repulsion = 13947.040988 eV Total energy + Delta-G solvation = -2582.164763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60315 -37.97401 -35.74628 -35.02321 -33.00029 -32.08490 -29.52254 -28.37864 -27.35365 -25.30925 -23.49103 -22.08208 -21.51030 -19.04865 -17.99407 -17.32270 -16.86466 -16.41758 -15.89821 -15.46591 -15.27146 -14.84390 -14.46064 -14.41832 -14.06863 -13.60897 -13.44441 -13.19387 -12.96225 -12.83404 -12.71798 -12.60813 -12.54335 -12.17294 -11.99640 -11.49408 -11.15056 -10.24974 -9.94349 -9.79410 -9.59147 -8.59824 -8.27859 -6.07197 0.89484 1.14981 1.42509 1.55812 1.57754 2.26014 2.40981 2.84445 3.74060 3.82035 4.06006 4.11611 4.28986 4.49858 4.53032 4.58425 4.65677 4.75279 4.78166 4.94443 5.01478 5.05126 5.08749 5.21795 5.23548 5.38725 5.57761 5.66682 5.93054 6.03480 6.21161 6.50960 6.59155 6.65104 6.82107 6.97015 7.07555 7.90106 8.43531 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038905 B = 0.006441 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.522375 B = 4346.159277 C = 4880.096825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.019 3.981 3 N -0.525 5.525 4 C 0.284 3.716 5 N -0.630 5.630 6 C 0.105 3.895 7 C 0.145 3.855 8 C 0.062 3.938 9 N -0.851 5.851 10 C -0.216 4.216 11 C -0.110 4.110 12 C -0.001 4.001 13 C -0.481 4.481 14 H 0.081 0.919 15 C 0.032 3.968 16 N -0.841 5.841 17 Si 0.980 3.020 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.268 1.268 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.351 0.649 32 H 0.350 0.650 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 8.916 3.409 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 N -0.242 5.242 4 C 0.052 3.948 5 N -0.350 5.350 6 C -0.038 4.038 7 C 0.020 3.980 8 C -0.070 4.070 9 N -0.384 5.384 10 C -0.240 4.240 11 C -0.136 4.136 12 C -0.006 4.006 13 C -0.512 4.512 14 H 0.099 0.901 15 C -0.181 4.181 16 N -0.469 5.469 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.195 1.195 20 H -0.193 1.193 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.395 9.237 2.915 9.978 hybrid contribution 1.273 -1.350 0.429 1.905 sum 3.668 7.887 3.345 9.319 Atomic orbital electron populations 1.20208 0.89217 1.01402 1.01114 1.21291 0.96406 0.87363 1.06874 1.66474 1.07996 1.30607 1.19078 1.18058 0.88307 0.86035 1.02433 1.45685 1.05499 1.01651 1.82185 1.21614 0.78472 1.02826 1.00928 1.20999 0.96293 0.85462 0.95197 1.21951 0.95015 0.92347 0.97725 1.58486 1.55730 1.06348 1.17799 1.21083 0.99677 0.92313 1.10932 1.21287 0.95005 0.96539 1.00804 1.18535 0.92875 0.94124 0.95116 1.19580 1.02113 0.92740 1.36735 0.90068 1.26684 0.94651 1.04709 0.92013 1.69888 1.19833 1.32534 1.24606 0.85187 0.79256 0.76474 0.78959 1.18034 1.19479 1.19312 0.92194 0.92372 0.91565 0.93739 0.89584 0.92028 0.90008 0.92413 0.94338 0.95010 0.83608 0.83651 0.85852 0.86878 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.71 9.57 71.23 0.68 -2.03 16 2 C 0.02 0.98 6.86 43.23 0.30 1.28 16 3 N -0.53 -26.22 8.94 -179.37 -1.60 -27.82 16 4 C 0.28 13.20 7.37 133.32 0.98 14.18 16 5 N -0.63 -22.90 2.97 -728.58 -2.17 -25.06 16 6 C 0.10 2.86 10.26 127.77 1.31 4.17 16 7 C 0.14 4.61 5.72 86.38 0.49 5.10 16 8 C 0.06 1.79 7.11 86.30 0.61 2.40 16 9 N -0.85 -19.59 9.62 -186.72 -1.80 -21.39 16 10 C -0.22 -10.30 9.19 22.23 0.20 -10.10 16 11 C -0.11 -5.87 8.74 22.64 0.20 -5.68 16 12 C 0.00 -0.08 5.58 -21.17 -0.12 -0.20 16 13 C -0.48 -25.81 8.14 23.39 0.19 -25.62 16 14 H 0.08 4.17 6.87 -2.91 -0.02 4.15 16 15 C 0.03 1.62 5.19 85.23 0.44 2.06 16 16 N -0.84 -44.45 10.94 21.82 0.24 -44.21 16 17 Si 0.98 38.61 29.59 68.60 2.03 40.64 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 22 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.07 2.87 6.77 -2.39 -0.02 2.86 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.77 8.07 -2.38 -0.02 1.75 16 26 H 0.06 1.72 5.94 -2.39 -0.01 1.71 16 27 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 28 H 0.06 2.22 7.27 -2.38 -0.02 2.20 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.35 6.69 9.08 -89.69 -0.81 5.87 16 32 H 0.35 6.25 8.99 -89.69 -0.81 5.44 16 33 H 0.12 5.09 5.97 -2.91 -0.02 5.07 16 34 H 0.11 6.25 6.25 -2.91 -0.02 6.23 16 35 H 0.28 13.63 8.30 -92.71 -0.77 12.86 16 Total: -1.00 -63.73 289.39 1.49 -62.23 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.51 Total: 30.04 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.30 Total: -14.43 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -5.33 Total: -118.48 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -63.73 1.49 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163690838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.720 kcal (2) G-P(sol) polarization free energy of solvation -63.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds