Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00082 * 2 1 4 4 C 1.52998 * 109.47234 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47208 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99479 * 269.99809 * 5 4 3 7 7 C 1.39077 * 120.00496 * 89.99663 * 5 4 3 8 8 C 1.38740 * 119.65983 * 185.00064 * 7 5 4 9 9 C 1.40786 * 118.67083 * 179.72382 * 8 7 5 10 10 C 1.41552 * 120.99480 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99509 * 23.19492 * 10 9 8 12 12 C 1.40020 * 120.00040 * 203.18812 * 10 9 8 13 13 N 1.30748 * 120.00106 * 17.30012 * 12 10 9 14 14 Si 1.86801 * 120.00074 * 197.29961 * 12 10 9 15 15 H 1.48507 * 109.46919 * 59.99839 * 14 12 10 16 16 H 1.48497 * 109.47395 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47097 * 300.00146 * 14 12 10 18 18 C 1.41186 * 118.01177 * 0.02562 * 9 8 7 19 19 C 1.36553 * 119.14755 * 359.97438 * 18 9 8 20 20 N 1.32107 * 121.26849 * 0.02562 * 19 18 9 21 21 H 1.09004 * 109.47085 * 299.99571 * 1 2 3 22 22 H 1.09000 * 109.47212 * 59.99789 * 1 2 3 23 23 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99541 * 236.04909 * 2 1 3 25 25 H 1.09006 * 109.46859 * 60.00064 * 3 2 1 26 26 H 1.09003 * 109.47289 * 300.00338 * 3 2 1 27 27 H 1.08994 * 109.47124 * 59.99786 * 4 3 2 28 28 H 1.09003 * 109.47009 * 300.00204 * 4 3 2 29 29 H 1.08998 * 109.47266 * 269.99599 * 6 5 4 30 30 H 1.08996 * 109.47352 * 30.00105 * 6 5 4 31 31 H 1.08997 * 109.46707 * 150.00203 * 6 5 4 32 32 H 1.08006 * 120.66794 * 359.74271 * 8 7 5 33 33 H 0.96999 * 120.00193 * 180.02562 * 13 12 10 34 34 H 1.07997 * 120.42835 * 179.97438 * 18 9 8 35 35 H 1.08002 * 119.37061 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6983 0.0000 6 6 4.3119 3.3828 -1.2686 7 6 4.2996 3.3469 1.2046 8 6 4.6973 4.6760 1.1992 9 6 4.9387 5.3139 2.4309 10 6 5.3469 6.6683 2.4827 11 1 5.1268 7.3304 1.6583 12 6 6.0357 7.1496 3.6027 13 7 6.5971 6.3117 4.4347 14 14 6.1525 8.9887 3.9082 15 1 4.7871 9.5536 4.0566 16 1 6.9277 9.2359 5.1504 17 1 6.8350 9.6387 2.7606 18 6 4.7627 4.5619 3.6128 19 6 4.3685 3.2579 3.5189 20 7 4.1504 2.6902 2.3461 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8305 -0.5261 -0.7815 25 1 1.6459 1.8948 0.8900 26 1 1.6459 1.8948 -0.8900 27 1 3.8740 0.8074 -0.8908 28 1 3.8748 0.8071 0.8891 29 1 5.3363 3.1843 -1.5837 30 1 3.6208 3.0174 -2.0281 31 1 4.1736 4.4560 -1.1375 32 1 4.8189 5.2109 0.2688 33 1 7.0740 6.6451 5.2108 34 1 4.9376 5.0122 4.5787 35 1 4.2323 2.6794 4.4207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163720705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = 38.622087 kcal Electronic energy + Delta-G solvation = -16241.327819 eV Core-core repulsion = 13660.122960 eV Total energy + Delta-G solvation = -2581.204860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.64039 -36.65972 -35.01681 -33.78452 -30.71725 -29.69984 -28.39018 -25.98978 -25.52485 -23.76359 -21.97585 -21.10402 -19.97569 -17.47703 -16.01262 -15.78619 -15.26931 -14.95590 -14.46816 -14.06297 -13.82753 -13.50689 -13.38241 -12.88516 -12.57038 -12.40100 -12.06265 -11.72296 -11.52273 -11.35712 -11.34809 -11.11587 -10.78136 -10.63166 -10.25139 -9.77190 -9.36212 -8.71549 -8.38283 -7.93099 -7.82117 -6.80227 -6.35765 -4.53004 2.83452 3.04231 3.06521 3.09162 3.37909 3.73798 3.90082 4.53249 4.73728 5.23884 5.33949 5.45971 5.56581 5.60199 5.77463 5.78103 5.86251 5.96686 6.06731 6.20212 6.31477 6.47404 6.79116 6.93161 7.01044 7.02491 7.10922 7.31449 7.41148 7.59789 7.77386 7.96300 8.14742 8.41614 8.67533 8.85919 8.93761 9.81260 10.13521 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042955 B = 0.005385 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.690260 B = 5198.839654 C = 5449.626470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.691 5.691 3 C 0.045 3.955 4 C 0.143 3.857 5 N -0.629 5.629 6 C 0.108 3.892 7 C 0.397 3.603 8 C -0.336 4.336 9 C 0.156 3.844 10 C -0.458 4.458 11 H 0.078 0.922 12 C 0.080 3.920 13 N -0.784 5.784 14 Si 0.910 3.090 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.244 4.244 19 C 0.115 3.885 20 N -0.614 5.614 21 H 0.064 0.936 22 H 0.017 0.983 23 H 0.064 0.936 24 H 0.335 0.665 25 H 0.077 0.923 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.282 0.718 34 H 0.123 0.877 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -4.923 -6.921 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.322 5.322 3 C -0.085 4.085 4 C 0.018 3.982 5 N -0.347 5.347 6 C -0.036 4.036 7 C 0.168 3.832 8 C -0.363 4.363 9 C 0.148 3.852 10 C -0.489 4.489 11 H 0.096 0.904 12 C -0.140 4.140 13 N -0.409 5.409 14 Si 0.734 3.266 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.269 4.269 19 C -0.034 4.034 20 N -0.337 5.337 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.152 0.848 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.652 -5.930 -6.131 10.232 hybrid contribution 0.185 2.036 -0.726 2.170 sum -5.466 -3.894 -6.857 9.595 Atomic orbital electron populations 1.22157 0.88083 1.01369 1.00315 1.60304 1.07471 1.14950 1.49436 1.22472 0.97117 0.88417 1.00507 1.20965 0.91176 0.83926 1.02170 1.45897 1.71895 1.14210 1.02721 1.21426 0.99160 0.98276 0.84756 1.17910 0.91968 0.88166 0.85151 1.21177 1.23133 0.94026 0.97917 1.17582 0.85010 0.92536 0.90113 1.19541 1.31775 0.95066 1.02509 0.90366 1.25951 0.92931 1.00313 0.94794 1.69800 1.23033 1.36915 1.11130 0.86343 0.79421 0.82313 0.78496 1.18748 1.20241 1.18944 1.21792 1.09819 0.95502 0.99779 1.21382 0.96034 0.92983 0.93043 1.66773 1.30454 1.39328 0.97134 0.91697 0.96476 0.91703 0.84789 0.90458 0.96218 0.93062 0.89008 0.94383 0.93022 0.91246 0.88322 0.90677 0.85948 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.06 0.64 0.99 16 2 N -0.69 -9.16 6.86 -121.13 -0.83 -9.99 16 3 C 0.05 0.71 6.01 -3.82 -0.02 0.68 16 4 C 0.14 2.40 5.73 -4.04 -0.02 2.37 16 5 N -0.63 -12.21 2.99 -181.79 -0.54 -12.75 16 6 C 0.11 1.71 10.28 59.85 0.62 2.32 16 7 C 0.40 9.49 7.37 -154.99 -1.14 8.34 16 8 C -0.34 -8.49 9.07 -38.43 -0.35 -8.84 16 9 C 0.16 4.24 5.61 -106.55 -0.60 3.64 16 10 C -0.46 -12.18 9.12 -37.65 -0.34 -12.52 16 11 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 12 C 0.08 1.99 5.20 -17.35 -0.09 1.90 16 13 N -0.78 -20.14 10.90 55.55 0.61 -19.54 16 14 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 18 C -0.24 -6.49 8.75 -39.07 -0.34 -6.84 16 19 C 0.11 2.86 11.10 -18.04 -0.20 2.66 16 20 N -0.61 -15.18 9.05 -12.82 -0.12 -15.29 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.34 3.71 8.82 -39.29 -0.35 3.36 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.09 1.77 7.30 -51.93 -0.38 1.39 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.66 8.07 -51.93 -0.42 0.25 16 31 H 0.07 1.14 5.98 -51.93 -0.31 0.83 16 32 H 0.10 2.33 6.03 -52.48 -0.32 2.01 16 33 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 34 H 0.12 3.30 6.16 -52.49 -0.32 2.98 16 35 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -29.07 293.18 -8.37 -37.44 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.02 Total: 7.61 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.85 Total: -5.29 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.88 Total: -57.58 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.07 -8.37 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163720705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.062 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds