Wall clock time and date at job start Sun Mar 29 2020 22:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00082 * 2 1 4 4 C 1.52998 * 109.47234 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47208 * 180.02562 * 4 3 2 6 6 C 1.46505 * 119.99479 * 269.99809 * 5 4 3 7 7 C 1.39077 * 120.00496 * 89.99663 * 5 4 3 8 8 C 1.38740 * 119.65983 * 185.00064 * 7 5 4 9 9 C 1.40786 * 118.67083 * 179.72382 * 8 7 5 10 10 C 1.41552 * 120.99480 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99509 * 23.19492 * 10 9 8 12 12 C 1.40020 * 120.00040 * 203.18812 * 10 9 8 13 13 N 1.30748 * 120.00106 * 17.30012 * 12 10 9 14 14 Si 1.86801 * 120.00074 * 197.29961 * 12 10 9 15 15 H 1.48507 * 109.46919 * 59.99839 * 14 12 10 16 16 H 1.48497 * 109.47395 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47097 * 300.00146 * 14 12 10 18 18 C 1.41186 * 118.01177 * 0.02562 * 9 8 7 19 19 C 1.36553 * 119.14755 * 359.97438 * 18 9 8 20 20 N 1.32107 * 121.26849 * 0.02562 * 19 18 9 21 21 H 1.09004 * 109.47085 * 299.99571 * 1 2 3 22 22 H 1.09000 * 109.47212 * 59.99789 * 1 2 3 23 23 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99541 * 236.04909 * 2 1 3 25 25 H 1.09006 * 109.46859 * 60.00064 * 3 2 1 26 26 H 1.09003 * 109.47289 * 300.00338 * 3 2 1 27 27 H 1.08994 * 109.47124 * 59.99786 * 4 3 2 28 28 H 1.09003 * 109.47009 * 300.00204 * 4 3 2 29 29 H 1.08998 * 109.47266 * 269.99599 * 6 5 4 30 30 H 1.08996 * 109.47352 * 30.00105 * 6 5 4 31 31 H 1.08997 * 109.46707 * 150.00203 * 6 5 4 32 32 H 1.08006 * 120.66794 * 359.74271 * 8 7 5 33 33 H 0.96999 * 120.00193 * 180.02562 * 13 12 10 34 34 H 1.07997 * 120.42835 * 179.97438 * 18 9 8 35 35 H 1.08002 * 119.37061 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6983 0.0000 6 6 4.3119 3.3828 -1.2686 7 6 4.2996 3.3469 1.2046 8 6 4.6973 4.6760 1.1992 9 6 4.9387 5.3139 2.4309 10 6 5.3469 6.6683 2.4827 11 1 5.1268 7.3304 1.6583 12 6 6.0357 7.1496 3.6027 13 7 6.5971 6.3117 4.4347 14 14 6.1525 8.9887 3.9082 15 1 4.7871 9.5536 4.0566 16 1 6.9277 9.2359 5.1504 17 1 6.8350 9.6387 2.7606 18 6 4.7627 4.5619 3.6128 19 6 4.3685 3.2579 3.5189 20 7 4.1504 2.6902 2.3461 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8305 -0.5261 -0.7815 25 1 1.6459 1.8948 0.8900 26 1 1.6459 1.8948 -0.8900 27 1 3.8740 0.8074 -0.8908 28 1 3.8748 0.8071 0.8891 29 1 5.3363 3.1843 -1.5837 30 1 3.6208 3.0174 -2.0281 31 1 4.1736 4.4560 -1.1375 32 1 4.8189 5.2109 0.2688 33 1 7.0740 6.6451 5.2108 34 1 4.9376 5.0122 4.5787 35 1 4.2323 2.6794 4.4207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163720705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:19 Heat of formation + Delta-G solvation = 20.029041 kcal Electronic energy + Delta-G solvation = -16242.134074 eV Core-core repulsion = 13660.122960 eV Total energy + Delta-G solvation = -2582.011115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44658 -38.08276 -36.42463 -35.60761 -32.61595 -31.22183 -29.98008 -27.76448 -26.99488 -25.06545 -23.40862 -22.96347 -21.68700 -19.29347 -17.64704 -17.22297 -16.75767 -16.59820 -15.95583 -15.84665 -15.21661 -15.03996 -14.77782 -14.34550 -14.18029 -13.83654 -13.71329 -13.13045 -13.01712 -12.79030 -12.74376 -12.64797 -12.44339 -12.05524 -11.87025 -11.70792 -11.21251 -10.42972 -9.91522 -9.76020 -9.42370 -8.68232 -8.10206 -6.53800 0.99556 1.19365 1.39271 1.51494 1.62646 2.19031 2.29499 2.81968 3.42936 3.83481 4.02925 4.12692 4.21569 4.46975 4.49090 4.54358 4.61222 4.69003 4.84043 4.88519 4.94707 4.99955 5.06050 5.10793 5.15423 5.29295 5.35901 5.64915 5.87184 5.97195 6.10040 6.44577 6.47883 6.52069 6.79259 6.87969 7.02726 7.89473 8.28048 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042955 B = 0.005385 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.690260 B = 5198.839654 C = 5449.626470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.700 5.700 3 C 0.061 3.939 4 C 0.143 3.857 5 N -0.628 5.628 6 C 0.103 3.897 7 C 0.396 3.604 8 C -0.358 4.358 9 C 0.127 3.873 10 C -0.491 4.491 11 H 0.079 0.921 12 C 0.039 3.961 13 N -0.813 5.813 14 Si 0.988 3.012 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.257 1.257 18 C -0.270 4.270 19 C 0.114 3.886 20 N -0.623 5.623 21 H 0.050 0.950 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.352 0.648 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.292 0.708 34 H 0.111 0.889 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -5.056 -8.262 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.332 5.332 3 C -0.070 4.070 4 C 0.019 3.981 5 N -0.346 5.346 6 C -0.040 4.040 7 C 0.165 3.835 8 C -0.384 4.384 9 C 0.119 3.881 10 C -0.521 4.521 11 H 0.098 0.902 12 C -0.178 4.178 13 N -0.438 5.438 14 Si 0.807 3.193 15 H -0.184 1.184 16 H -0.189 1.189 17 H -0.181 1.181 18 C -0.295 4.295 19 C -0.036 4.036 20 N -0.346 5.346 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.105 0.895 24 H 0.170 0.830 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.021 -6.105 -7.527 11.410 hybrid contribution 0.277 1.948 -0.376 2.003 sum -5.744 -4.158 -7.903 10.618 Atomic orbital electron populations 1.22200 0.86761 1.02781 1.00146 1.60224 1.08805 1.13609 1.50609 1.22153 0.96047 0.89643 0.99193 1.21070 0.91996 0.82458 1.02588 1.46187 1.70976 1.15126 1.02288 1.21648 1.00856 0.97635 0.83872 1.18203 0.90655 0.88144 0.86480 1.21333 1.24360 0.94958 0.97774 1.17994 0.85598 0.93388 0.91095 1.19840 1.33097 0.95307 1.03867 0.90244 1.26863 0.91759 1.05354 0.93813 1.69850 1.23066 1.39289 1.11567 0.85178 0.79558 0.75646 0.78871 1.18446 1.18921 1.18142 1.21754 1.12067 0.96438 0.99250 1.21740 0.94926 0.92705 0.94181 1.66922 1.30988 1.39315 0.97401 0.93119 0.95359 0.89515 0.82990 0.94245 0.95007 0.89423 0.91706 0.93355 0.89255 0.92291 0.87416 0.89755 0.87127 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.70 127.69 1.37 1.99 16 2 N -0.70 -17.07 6.86 -537.13 -3.68 -20.76 16 3 C 0.06 1.79 6.01 86.30 0.52 2.31 16 4 C 0.14 4.55 5.73 86.38 0.49 5.04 16 5 N -0.63 -23.66 2.99 -729.06 -2.18 -25.84 16 6 C 0.10 3.02 10.28 127.77 1.31 4.34 16 7 C 0.40 19.06 7.37 132.90 0.98 20.04 16 8 C -0.36 -18.47 9.07 23.01 0.21 -18.26 16 9 C 0.13 7.15 5.61 -21.11 -0.12 7.03 16 10 C -0.49 -26.75 9.12 23.52 0.21 -26.53 16 11 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 12 C 0.04 1.98 5.20 85.29 0.44 2.42 16 13 N -0.81 -42.43 10.90 21.84 0.24 -42.19 16 14 Si 0.99 37.58 29.59 68.60 2.03 39.61 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 16 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 17 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 18 C -0.27 -14.87 8.75 22.60 0.20 -14.67 16 19 C 0.11 5.81 11.10 84.26 0.94 6.74 16 20 N -0.62 -31.20 9.05 -194.47 -1.76 -32.96 16 21 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.35 6.69 8.82 -89.69 -0.79 5.90 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.06 2.45 7.30 -2.39 -0.02 2.43 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.06 1.87 5.98 -2.39 -0.01 1.86 16 32 H 0.11 5.18 6.03 -2.91 -0.02 5.17 16 33 H 0.29 13.65 8.29 -92.71 -0.77 12.88 16 34 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 35 H 0.14 6.24 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -64.16 293.18 1.49 -62.67 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.29 Total: 29.01 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 6.55 Total: -9.55 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -7.39 Total: -121.74 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -64.16 1.49 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163720705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.699 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds