Wall clock time and date at job start Sun Mar 29 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.46833 * 2 1 4 4 C 1.46897 * 110.99709 * 163.95226 * 3 2 1 5 5 C 1.50700 * 109.47229 * 284.28357 * 4 3 2 6 6 H 1.08003 * 120.00189 * 4.54725 * 5 4 3 7 7 C 1.37881 * 120.00109 * 184.54242 * 5 4 3 8 8 N 1.31521 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46982 * 60.00505 * 9 7 5 11 11 H 1.48498 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47306 * 300.00347 * 9 7 5 13 13 C 1.39044 * 111.00041 * 287.90570 * 3 2 1 14 14 N 1.32521 * 120.15861 * 296.64613 * 13 3 2 15 15 N 1.28353 * 122.06353 * 180.02562 * 14 13 3 16 16 C 1.31817 * 122.28748 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99616 * 180.02562 * 16 15 14 18 18 C 1.38779 * 120.01156 * 0.02562 * 16 15 14 19 19 C 1.38600 * 118.04399 * 359.68056 * 18 16 15 20 20 C 1.50704 * 121.05036 * 180.31136 * 19 18 16 21 21 H 1.08998 * 109.47369 * 305.16823 * 1 2 3 22 22 H 1.09003 * 109.47356 * 65.16198 * 1 2 3 23 23 H 1.08997 * 109.47037 * 185.16683 * 1 2 3 24 24 H 1.09000 * 109.47002 * 240.00156 * 2 1 3 25 25 H 1.09000 * 109.46878 * 119.99855 * 2 1 3 26 26 H 1.09006 * 109.47104 * 44.28448 * 4 3 2 27 27 H 1.09000 * 109.47448 * 164.28310 * 4 3 2 28 28 H 0.97001 * 119.99450 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47215 * 89.99664 * 17 16 15 30 30 H 1.09002 * 109.46914 * 210.00244 * 17 16 15 31 31 H 1.09006 * 109.46636 * 329.99770 * 17 16 15 32 32 H 1.08002 * 120.97696 * 179.97438 * 18 16 15 33 33 H 1.08999 * 109.47160 * 275.14295 * 20 19 18 34 34 H 1.08998 * 109.46575 * 35.13992 * 20 19 18 35 35 H 1.08993 * 109.46943 * 155.14024 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4377 1.4421 0.3791 5 6 3.5685 1.2396 1.8667 6 1 2.6951 1.0113 2.4595 7 6 4.8033 1.3459 2.4710 8 7 5.8668 1.6244 1.7491 9 14 4.9653 1.0957 4.3150 10 1 4.5083 -0.2716 4.6710 11 1 6.3858 1.2628 4.7143 12 1 4.1307 2.0974 5.0258 13 6 1.8094 1.9879 -1.2352 14 7 2.4143 1.5183 -2.3168 15 7 2.2470 2.0465 -3.4745 16 6 1.4637 3.0892 -3.6662 17 6 1.3044 3.6679 -5.0486 18 6 0.7857 3.6543 -2.5953 19 6 0.9563 3.0856 -1.3429 20 6 0.2472 3.6402 -0.1342 21 1 -0.3634 0.5919 0.8400 22 1 -0.3634 0.4317 -0.9326 23 1 -0.3633 -1.0235 0.0925 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9854 0.6580 -0.1438 27 1 3.8477 2.4148 0.1074 28 1 6.7354 1.6995 2.1744 29 1 0.4713 3.1788 -5.5534 30 1 1.1070 4.7373 -4.9742 31 1 2.2198 3.5060 -5.6178 32 1 0.1403 4.5090 -2.7345 33 1 0.8272 4.4644 0.2810 34 1 -0.7393 4.0008 -0.4256 35 1 0.1407 2.8567 0.6158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:19 Heat of formation + Delta-G solvation = 53.829759 kcal Electronic energy + Delta-G solvation = -16761.763582 eV Core-core repulsion = 14181.218176 eV Total energy + Delta-G solvation = -2580.545406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80852 -37.13006 -33.97632 -33.12070 -32.45269 -30.21762 -28.06909 -27.37487 -26.07297 -23.79398 -22.45296 -21.40149 -20.62388 -17.30031 -16.57873 -15.84670 -15.33277 -14.71404 -14.53809 -13.97781 -13.90246 -13.14508 -12.98450 -12.72092 -12.50702 -12.48889 -12.39747 -12.14320 -11.92328 -11.38184 -11.10260 -10.90456 -10.67661 -10.50480 -10.35626 -10.01863 -9.64976 -9.47114 -9.24020 -8.81438 -8.46588 -7.59792 -6.04492 -4.07586 1.19281 1.30525 3.32446 3.36741 3.38912 3.88291 4.21513 4.44430 4.55806 4.75573 4.94582 5.19998 5.29738 5.36907 5.46767 5.53684 5.55702 5.69917 5.80144 5.85044 5.92654 6.01597 6.17765 6.22106 6.34965 6.43896 6.59957 6.65851 6.68872 7.14048 7.32766 7.74401 7.94306 8.06838 8.43653 8.98007 9.20164 9.55979 11.06046 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030764 B = 0.006929 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.928203 B = 4039.921469 C = 4290.692681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 N -0.482 5.482 4 C 0.203 3.797 5 C -0.510 4.510 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.259 3.741 14 N -0.267 5.267 15 N -0.247 5.247 16 C 0.047 3.953 17 C -0.093 4.093 18 C -0.131 4.131 19 C -0.058 4.058 20 C -0.105 4.105 21 H 0.063 0.937 22 H 0.037 0.963 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.007 0.993 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 3.999 -7.269 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 N -0.208 5.208 4 C 0.080 3.920 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.023 3.977 14 N -0.111 5.111 15 N -0.091 5.091 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.162 4.162 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.327 3.138 -7.545 13.967 hybrid contribution -0.192 0.609 1.015 1.199 sum -11.519 3.747 -6.530 13.761 Atomic orbital electron populations 1.21811 0.96318 1.00945 1.01181 1.22080 0.94286 0.88325 1.02228 1.60486 1.24764 1.17546 1.18008 1.19779 0.78515 0.97311 0.96423 1.21048 0.93692 1.48209 0.91908 0.91627 1.24995 0.95679 0.95308 0.98526 1.69972 0.99153 1.48536 1.35785 0.86509 0.76912 0.78740 0.84928 1.20165 1.21357 1.20161 1.21747 0.91522 0.93017 0.91399 1.73274 1.18127 1.24423 0.95240 1.72742 1.13242 1.07849 1.15235 1.22751 0.94988 0.94734 0.97348 1.20568 1.03398 1.00100 0.91074 1.22065 1.00786 1.00962 0.92211 1.21056 0.95568 0.94248 0.96189 1.20692 0.98107 1.02295 0.95079 0.91834 0.94349 0.92718 0.94351 0.88964 0.97476 0.95400 0.92736 0.90523 0.90791 0.90348 0.83976 0.90375 0.91990 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.90 37.16 0.37 -1.91 16 2 C 0.06 1.14 5.47 -3.82 -0.02 1.12 16 3 N -0.48 -10.60 3.37 -174.40 -0.59 -11.18 16 4 C 0.20 5.43 4.51 -4.98 -0.02 5.41 16 5 C -0.51 -14.15 8.55 -34.44 -0.29 -14.45 16 6 H 0.07 1.76 7.73 -52.48 -0.41 1.35 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.26 5.36 4.51 -154.76 -0.70 4.66 16 14 N -0.27 -5.89 10.74 31.23 0.34 -5.55 16 15 N -0.25 -4.86 11.42 33.61 0.38 -4.47 16 16 C 0.05 0.73 6.87 -82.40 -0.57 0.16 16 17 C -0.09 -0.98 10.19 36.00 0.37 -0.61 16 18 C -0.13 -1.88 9.60 -39.25 -0.38 -2.25 16 19 C -0.06 -0.98 5.95 -104.04 -0.62 -1.60 16 20 C -0.10 -1.48 9.90 36.01 0.36 -1.12 16 21 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 22 H 0.04 0.60 7.73 -51.93 -0.40 0.20 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.79 7.63 -51.93 -0.40 0.40 16 25 H 0.09 1.90 7.28 -51.93 -0.38 1.52 16 26 H 0.01 0.21 8.00 -51.93 -0.42 -0.20 16 27 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.09 1.44 7.15 -51.93 -0.37 1.06 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -31.92 297.05 -6.56 -38.47 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.28 Total: -2.91 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.60 Total: -9.08 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.87 Total: -47.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.92 -6.56 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.305 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds