Wall clock time and date at job start Sun Mar 29 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.46833 * 2 1 4 4 C 1.46897 * 110.99709 * 163.95226 * 3 2 1 5 5 C 1.50700 * 109.47229 * 284.28357 * 4 3 2 6 6 H 1.08003 * 120.00189 * 4.54725 * 5 4 3 7 7 C 1.37881 * 120.00109 * 184.54242 * 5 4 3 8 8 N 1.31521 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46982 * 60.00505 * 9 7 5 11 11 H 1.48498 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47306 * 300.00347 * 9 7 5 13 13 C 1.39044 * 111.00041 * 287.90570 * 3 2 1 14 14 N 1.32521 * 120.15861 * 296.64613 * 13 3 2 15 15 N 1.28353 * 122.06353 * 180.02562 * 14 13 3 16 16 C 1.31817 * 122.28748 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99616 * 180.02562 * 16 15 14 18 18 C 1.38779 * 120.01156 * 0.02562 * 16 15 14 19 19 C 1.38600 * 118.04399 * 359.68056 * 18 16 15 20 20 C 1.50704 * 121.05036 * 180.31136 * 19 18 16 21 21 H 1.08998 * 109.47369 * 305.16823 * 1 2 3 22 22 H 1.09003 * 109.47356 * 65.16198 * 1 2 3 23 23 H 1.08997 * 109.47037 * 185.16683 * 1 2 3 24 24 H 1.09000 * 109.47002 * 240.00156 * 2 1 3 25 25 H 1.09000 * 109.46878 * 119.99855 * 2 1 3 26 26 H 1.09006 * 109.47104 * 44.28448 * 4 3 2 27 27 H 1.09000 * 109.47448 * 164.28310 * 4 3 2 28 28 H 0.97001 * 119.99450 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47215 * 89.99664 * 17 16 15 30 30 H 1.09002 * 109.46914 * 210.00244 * 17 16 15 31 31 H 1.09006 * 109.46636 * 329.99770 * 17 16 15 32 32 H 1.08002 * 120.97696 * 179.97438 * 18 16 15 33 33 H 1.08999 * 109.47160 * 275.14295 * 20 19 18 34 34 H 1.08998 * 109.46575 * 35.13992 * 20 19 18 35 35 H 1.08993 * 109.46943 * 155.14024 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4377 1.4421 0.3791 5 6 3.5685 1.2396 1.8667 6 1 2.6951 1.0113 2.4595 7 6 4.8033 1.3459 2.4710 8 7 5.8668 1.6244 1.7491 9 14 4.9653 1.0957 4.3150 10 1 4.5083 -0.2716 4.6710 11 1 6.3858 1.2628 4.7143 12 1 4.1307 2.0974 5.0258 13 6 1.8094 1.9879 -1.2352 14 7 2.4143 1.5183 -2.3168 15 7 2.2470 2.0465 -3.4745 16 6 1.4637 3.0892 -3.6662 17 6 1.3044 3.6679 -5.0486 18 6 0.7857 3.6543 -2.5953 19 6 0.9563 3.0856 -1.3429 20 6 0.2472 3.6402 -0.1342 21 1 -0.3634 0.5919 0.8400 22 1 -0.3634 0.4317 -0.9326 23 1 -0.3633 -1.0235 0.0925 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9854 0.6580 -0.1438 27 1 3.8477 2.4148 0.1074 28 1 6.7354 1.6995 2.1744 29 1 0.4713 3.1788 -5.5534 30 1 1.1070 4.7373 -4.9742 31 1 2.2198 3.5060 -5.6178 32 1 0.1403 4.5090 -2.7345 33 1 0.8272 4.4644 0.2810 34 1 -0.7393 4.0008 -0.4256 35 1 0.1407 2.8567 0.6158 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:18 Heat of formation + Delta-G solvation = 32.674391 kcal Electronic energy + Delta-G solvation = -16762.680947 eV Core-core repulsion = 14181.218176 eV Total energy + Delta-G solvation = -2581.462771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20405 -38.75328 -35.29941 -34.95809 -33.99069 -31.79577 -29.65785 -28.54046 -27.70222 -25.30653 -24.33041 -22.70089 -22.18382 -18.83443 -18.45626 -17.54423 -17.01492 -16.30429 -15.87799 -15.48046 -15.29797 -14.70524 -14.37129 -14.06290 -14.01477 -13.75788 -13.55024 -13.38898 -13.10935 -12.98030 -12.73442 -12.71617 -12.41333 -12.08813 -12.03165 -11.78981 -11.52843 -10.84167 -10.70449 -10.63751 -10.26749 -9.36816 -8.22887 -6.35726 -0.10153 -0.03093 1.42080 1.46488 1.54442 2.37456 2.52353 2.78763 3.10313 3.29011 3.57194 3.68998 4.01617 4.09467 4.17238 4.39832 4.50484 4.55419 4.62763 4.78288 4.83442 4.84997 4.93958 4.97434 5.03786 5.05216 5.11525 5.23499 5.28629 5.38826 5.52043 5.63552 5.97353 6.04058 6.51110 6.78179 7.34071 7.80649 8.88776 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030764 B = 0.006929 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.928203 B = 4039.921469 C = 4290.692681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 N -0.473 5.473 4 C 0.227 3.773 5 C -0.521 4.521 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.939 5.939 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.225 3.775 14 N -0.316 5.316 15 N -0.288 5.288 16 C 0.050 3.950 17 C -0.090 4.090 18 C -0.113 4.113 19 C -0.066 4.066 20 C -0.100 4.100 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.018 0.982 25 H 0.077 0.923 26 H -0.037 1.037 27 H -0.012 1.012 28 H 0.265 0.735 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.198 0.802 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 5.594 -6.958 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 N -0.198 5.198 4 C 0.102 3.898 5 C -0.559 4.559 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.803 3.197 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.012 4.012 14 N -0.158 5.158 15 N -0.130 5.130 16 C -0.096 4.096 17 C -0.148 4.148 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.157 4.157 21 H 0.092 0.908 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.036 0.964 25 H 0.095 0.905 26 H -0.019 1.019 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.215 0.785 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.151 4.722 -7.255 16.589 hybrid contribution 0.638 0.179 0.733 0.988 sum -13.513 4.901 -6.522 15.785 Atomic orbital electron populations 1.21673 0.92481 1.02785 1.01586 1.22129 0.97337 0.87163 1.00460 1.60444 1.21057 1.18602 1.19659 1.19255 0.81280 0.93391 0.95922 1.21365 0.94246 1.48000 0.92321 0.90700 1.26049 0.95087 0.94582 1.04159 1.70141 0.99832 1.49677 1.38261 0.85285 0.77018 0.79372 0.78029 1.18897 1.21168 1.18678 1.21929 0.93802 0.95010 0.90506 1.73106 1.19877 1.26423 0.96403 1.72646 1.15695 1.10345 1.14359 1.23634 0.92819 0.92944 1.00178 1.20767 1.04036 1.02109 0.87924 1.22640 0.99943 1.01327 0.90286 1.21422 0.94893 0.92932 0.98571 1.20741 0.99957 1.01520 0.93486 0.90817 0.94272 0.90226 0.96385 0.90459 1.01928 0.99369 0.92629 0.88264 0.87226 0.90921 0.78473 0.90454 0.87622 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.90 71.98 0.71 -3.20 16 2 C 0.06 2.32 5.47 86.30 0.47 2.79 16 3 N -0.47 -21.74 3.37 -705.69 -2.38 -24.12 16 4 C 0.23 12.98 4.51 85.56 0.39 13.37 16 5 C -0.52 -29.94 8.55 25.60 0.22 -29.72 16 6 H 0.07 4.07 7.73 -2.91 -0.02 4.05 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -58.67 13.29 21.45 0.28 -58.38 16 9 Si 0.98 44.33 29.54 68.60 2.03 46.36 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 13 C 0.22 9.60 4.51 133.09 0.60 10.20 16 14 N -0.32 -14.69 10.74 -55.11 -0.59 -15.28 16 15 N -0.29 -11.57 11.42 -47.58 -0.54 -12.11 16 16 C 0.05 1.46 6.87 42.69 0.29 1.75 16 17 C -0.09 -1.58 10.19 71.24 0.73 -0.85 16 18 C -0.11 -2.86 9.60 22.49 0.22 -2.64 16 19 C -0.07 -2.15 5.95 -19.49 -0.12 -2.26 16 20 C -0.10 -2.58 9.90 71.24 0.70 -1.88 16 21 H 0.07 2.11 7.88 -2.39 -0.02 2.09 16 22 H 0.04 1.19 7.73 -2.39 -0.02 1.17 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 24 H 0.02 0.79 7.63 -2.39 -0.02 0.78 16 25 H 0.08 3.34 7.28 -2.39 -0.02 3.33 16 26 H -0.04 -2.39 8.00 -2.38 -0.02 -2.41 16 27 H -0.01 -0.76 7.92 -2.39 -0.02 -0.78 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.11 1.78 8.13 -2.39 -0.02 1.76 16 35 H 0.07 2.22 7.15 -2.39 -0.02 2.20 16 Total: -1.00 -75.82 297.05 4.53 -71.29 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.06 Total: 4.29 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.68 Total: -12.04 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -3.23 Total: -109.90 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -75.82 4.53 -71.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.967 kcal (2) G-P(sol) polarization free energy of solvation -75.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds