Wall clock time and date at job start Sun Mar 29 2020 21:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47291 * 2 1 4 4 C 1.38602 * 120.71955 * 90.00045 * 3 2 1 5 5 N 1.32278 * 119.19782 * 180.02562 * 4 3 2 6 6 C 1.32492 * 120.73892 * 359.97438 * 5 4 3 7 7 N 1.38404 * 119.22054 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99573 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.46992 * 90.00334 * 8 7 6 10 10 C 1.46498 * 120.00128 * 180.27706 * 7 6 5 11 11 C 1.50702 * 109.47034 * 269.71965 * 10 7 6 12 12 H 1.08002 * 119.99777 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00392 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99817 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00435 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46950 * 89.99471 * 15 13 11 17 17 H 1.48499 * 109.47296 * 209.99467 * 15 13 11 18 18 H 1.48497 * 109.47067 * 330.00242 * 15 13 11 19 19 N 1.32499 * 121.56423 * 0.27359 * 6 5 4 20 20 C 1.32268 * 120.73966 * 359.44945 * 19 6 5 21 21 H 1.09010 * 109.46740 * 60.00182 * 1 2 3 22 22 H 1.08997 * 109.47857 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47444 * 300.00507 * 1 2 3 24 24 H 1.09000 * 109.47006 * 239.99648 * 2 1 3 25 25 H 1.09005 * 109.46741 * 120.00289 * 2 1 3 26 26 H 1.08002 * 120.40429 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.46803 * 209.99768 * 8 7 6 28 28 H 1.09000 * 109.47214 * 330.00561 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99450 * 9 8 7 30 30 H 1.08992 * 109.47123 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47214 * 300.00285 * 9 8 7 32 32 H 1.08993 * 109.47575 * 29.72402 * 10 7 6 33 33 H 1.09001 * 109.46870 * 149.72359 * 10 7 6 34 34 H 0.96996 * 120.00179 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.40587 * 180.25061 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2684 2.0883 1.1915 5 7 2.7087 3.3352 1.1564 6 6 2.9243 3.9449 0.0000 7 7 3.3857 5.2498 0.0000 8 6 3.6293 5.9406 1.2688 9 6 5.0741 5.7002 1.7110 10 6 3.6240 5.9424 -1.2688 11 6 5.0473 5.7119 -1.7072 12 1 5.7081 5.1094 -1.1015 13 6 5.5060 6.2702 -2.8814 14 7 4.7013 7.0035 -3.6192 15 14 7.2700 5.9839 -3.4252 16 1 7.3358 4.7642 -4.2699 17 1 7.7429 7.1540 -4.2078 18 1 8.1336 5.8056 -2.2304 19 7 2.7041 3.3368 -1.1564 20 6 2.2688 2.0882 -1.1915 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.0941 1.5967 2.1373 27 1 3.4624 7.0098 1.1381 28 1 2.9483 5.5565 2.0282 29 1 5.7553 6.0842 0.9515 30 1 5.2556 6.2145 2.6547 31 1 5.2411 4.6310 1.8415 32 1 2.9431 5.5561 -2.0272 33 1 3.4529 7.0108 -1.1371 34 1 5.0238 7.3959 -4.4455 35 1 2.0949 1.5964 -2.1372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:35 Heat of formation + Delta-G solvation = 46.000666 kcal Electronic energy + Delta-G solvation = -16536.372437 eV Core-core repulsion = 13955.487536 eV Total energy + Delta-G solvation = -2580.884900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33139 -36.61902 -34.07485 -33.09917 -32.53019 -30.35004 -28.85415 -26.70707 -24.11808 -24.04415 -22.42060 -21.83027 -20.23254 -17.09768 -16.88909 -16.39666 -14.84860 -14.61642 -14.46518 -14.10811 -13.93442 -13.57421 -12.97447 -12.81308 -12.63409 -12.32468 -12.07600 -11.80654 -11.41900 -11.18724 -11.02335 -10.90987 -10.60155 -10.43528 -10.16414 -10.11655 -9.98964 -9.71229 -9.06536 -8.44112 -8.25952 -6.93834 -6.00187 -4.05518 1.81891 1.83949 3.31277 3.37224 3.40036 3.66097 4.44213 4.57400 4.83919 5.06216 5.09338 5.17176 5.31321 5.38474 5.50105 5.69478 5.71628 5.82546 5.93521 5.96578 6.05665 6.09389 6.24879 6.32206 6.46518 6.53752 6.82069 6.96327 7.12564 7.44834 7.64770 7.85406 7.97370 8.26689 8.40462 8.93084 9.13217 9.58449 11.05810 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.007118 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.179979 B = 3932.985967 C = 4483.836771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.288 4.288 4 C 0.189 3.811 5 N -0.582 5.582 6 C 0.568 3.432 7 N -0.562 5.562 8 C 0.133 3.867 9 C -0.163 4.163 10 C 0.255 3.745 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.544 5.544 20 C 0.194 3.806 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -9.720 8.347 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.297 4.297 4 C 0.020 3.980 5 N -0.306 5.306 6 C 0.213 3.787 7 N -0.273 5.273 8 C 0.009 3.991 9 C -0.221 4.221 10 C 0.136 3.864 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.265 5.265 20 C 0.023 3.977 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.169 0.831 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.380 -8.307 8.161 12.828 hybrid contribution 0.785 -1.040 -0.456 1.380 sum -4.595 -9.347 7.706 12.956 Atomic orbital electron populations 1.21785 0.95627 1.00973 1.02001 1.20097 0.95259 0.92014 1.02141 1.21028 1.13311 0.99675 0.95721 1.22567 0.89212 0.88906 0.97326 1.67932 1.22162 1.11425 1.29054 1.19410 0.87579 0.87632 0.84065 1.46946 1.63874 1.07605 1.08864 1.21242 0.96549 0.96144 0.85200 1.22137 0.97965 1.01452 1.00579 1.19382 0.97182 0.91224 0.78627 1.21435 0.96486 1.31269 1.06469 0.92536 1.24900 0.97696 0.95177 0.96229 1.69929 1.35425 1.33794 1.14362 0.86550 0.84806 0.77690 0.78668 1.20675 1.21184 1.20037 1.68140 1.19091 1.10659 1.28579 1.22772 0.88451 0.88978 0.97452 0.92759 0.92944 0.92920 0.91539 0.91706 0.83103 0.91202 0.91033 0.91233 0.93062 0.93208 0.93244 0.95036 0.92804 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.06 -0.60 6.11 -27.88 -0.17 -0.77 16 3 C -0.29 -4.24 5.17 -104.35 -0.54 -4.78 16 4 C 0.19 2.95 11.00 -17.23 -0.19 2.76 16 5 N -0.58 -11.23 9.11 -13.93 -0.13 -11.35 16 6 C 0.57 12.53 8.17 -322.80 -2.64 9.89 16 7 N -0.56 -12.77 2.56 -177.41 -0.45 -13.22 16 8 C 0.13 2.51 6.18 -4.04 -0.02 2.49 16 9 C -0.16 -2.95 10.24 37.16 0.38 -2.57 16 10 C 0.26 6.69 5.21 -5.19 -0.03 6.66 16 11 C -0.52 -14.54 8.94 -34.44 -0.31 -14.85 16 12 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 N -0.54 -12.07 9.11 -13.93 -0.13 -12.20 16 20 C 0.19 3.39 11.00 -17.23 -0.19 3.20 16 21 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.07 1.25 7.89 -51.93 -0.41 0.84 16 28 H 0.07 1.27 7.33 -51.93 -0.38 0.88 16 29 H 0.07 1.42 7.28 -51.92 -0.38 1.04 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 1.42 7.32 -51.93 -0.38 1.04 16 33 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -31.23 298.77 -9.21 -40.44 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.28 Total: -2.06 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.44 Total: 2.65 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.03 Total: -62.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.23 -9.21 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.442 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds