Wall clock time and date at job start Sun Mar 29 2020 21:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47291 * 2 1 4 4 C 1.38602 * 120.71955 * 90.00045 * 3 2 1 5 5 N 1.32278 * 119.19782 * 180.02562 * 4 3 2 6 6 C 1.32492 * 120.73892 * 359.97438 * 5 4 3 7 7 N 1.38404 * 119.22054 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99573 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.46992 * 90.00334 * 8 7 6 10 10 C 1.46498 * 120.00128 * 180.27706 * 7 6 5 11 11 C 1.50702 * 109.47034 * 269.71965 * 10 7 6 12 12 H 1.08002 * 119.99777 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00392 * 180.02562 * 11 10 7 14 14 N 1.31519 * 119.99817 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00435 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46950 * 89.99471 * 15 13 11 17 17 H 1.48499 * 109.47296 * 209.99467 * 15 13 11 18 18 H 1.48497 * 109.47067 * 330.00242 * 15 13 11 19 19 N 1.32499 * 121.56423 * 0.27359 * 6 5 4 20 20 C 1.32268 * 120.73966 * 359.44945 * 19 6 5 21 21 H 1.09010 * 109.46740 * 60.00182 * 1 2 3 22 22 H 1.08997 * 109.47857 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47444 * 300.00507 * 1 2 3 24 24 H 1.09000 * 109.47006 * 239.99648 * 2 1 3 25 25 H 1.09005 * 109.46741 * 120.00289 * 2 1 3 26 26 H 1.08002 * 120.40429 * 359.97438 * 4 3 2 27 27 H 1.09000 * 109.46803 * 209.99768 * 8 7 6 28 28 H 1.09000 * 109.47214 * 330.00561 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99450 * 9 8 7 30 30 H 1.08992 * 109.47123 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47214 * 300.00285 * 9 8 7 32 32 H 1.08993 * 109.47575 * 29.72402 * 10 7 6 33 33 H 1.09001 * 109.46870 * 149.72359 * 10 7 6 34 34 H 0.96996 * 120.00179 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.40587 * 180.25061 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2684 2.0883 1.1915 5 7 2.7087 3.3352 1.1564 6 6 2.9243 3.9449 0.0000 7 7 3.3857 5.2498 0.0000 8 6 3.6293 5.9406 1.2688 9 6 5.0741 5.7002 1.7110 10 6 3.6240 5.9424 -1.2688 11 6 5.0473 5.7119 -1.7072 12 1 5.7081 5.1094 -1.1015 13 6 5.5060 6.2702 -2.8814 14 7 4.7013 7.0035 -3.6192 15 14 7.2700 5.9839 -3.4252 16 1 7.3358 4.7642 -4.2699 17 1 7.7429 7.1540 -4.2078 18 1 8.1336 5.8056 -2.2304 19 7 2.7041 3.3368 -1.1564 20 6 2.2688 2.0882 -1.1915 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.0941 1.5967 2.1373 27 1 3.4624 7.0098 1.1381 28 1 2.9483 5.5565 2.0282 29 1 5.7553 6.0842 0.9515 30 1 5.2556 6.2145 2.6547 31 1 5.2411 4.6310 1.8415 32 1 2.9431 5.5561 -2.0272 33 1 3.4529 7.0108 -1.1371 34 1 5.0238 7.3959 -4.4455 35 1 2.0949 1.5964 -2.1372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166592437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:35 Heat of formation + Delta-G solvation = 29.537115 kcal Electronic energy + Delta-G solvation = -16537.086350 eV Core-core repulsion = 13955.487536 eV Total energy + Delta-G solvation = -2581.598814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76440 -38.19351 -35.30768 -34.77703 -34.33040 -31.82474 -30.36441 -28.46361 -25.64439 -25.40433 -24.17580 -23.04153 -21.66249 -18.72658 -18.45336 -18.37379 -16.62296 -16.02658 -15.88439 -15.53870 -15.37999 -14.61842 -14.55498 -14.25923 -14.13880 -13.83608 -13.49220 -13.22751 -12.99184 -12.77911 -12.69629 -12.52607 -12.18816 -11.83290 -11.75171 -11.71074 -11.56861 -11.36813 -10.66053 -10.59305 -9.74777 -8.59354 -8.09826 -6.29733 0.41873 0.48810 1.36433 1.37656 1.47927 2.08374 2.40693 3.11371 3.13461 3.51054 3.80934 3.97894 4.11229 4.17123 4.26245 4.48329 4.61310 4.65903 4.68013 4.82556 4.90809 4.98053 5.02087 5.13781 5.19582 5.27293 5.41375 5.43472 5.48403 5.64528 5.73952 6.08278 6.16216 6.26650 6.72988 6.85530 7.36513 7.62379 8.89165 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.007118 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.179979 B = 3932.985967 C = 4483.836771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.261 4.261 4 C 0.180 3.820 5 N -0.587 5.587 6 C 0.545 3.455 7 N -0.581 5.581 8 C 0.132 3.868 9 C -0.150 4.150 10 C 0.277 3.723 11 C -0.524 4.524 12 H 0.045 0.955 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.594 5.594 20 C 0.172 3.828 21 H 0.042 0.958 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.196 0.804 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -11.868 9.687 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.270 4.270 4 C 0.013 3.987 5 N -0.311 5.311 6 C 0.190 3.810 7 N -0.294 5.294 8 C 0.009 3.991 9 C -0.209 4.209 10 C 0.156 3.844 11 C -0.563 4.563 12 H 0.063 0.937 13 C -0.187 4.187 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.204 1.204 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.316 5.316 20 C 0.005 3.995 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.212 0.788 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.319 -10.522 9.524 15.156 hybrid contribution 0.634 -0.546 -0.820 1.172 sum -4.685 -11.068 8.704 14.840 Atomic orbital electron populations 1.21757 0.94580 1.02341 1.01440 1.20223 0.95930 0.89105 1.03947 1.21484 1.09913 1.01275 0.94286 1.23388 0.87982 0.87835 0.99523 1.67954 1.22396 1.12971 1.27732 1.19517 0.88861 0.87668 0.84994 1.46756 1.65774 1.08476 1.08414 1.21390 0.97320 0.96234 0.84170 1.22015 0.96696 1.00844 1.01308 1.18779 0.95488 0.90256 0.79891 1.21585 0.97204 1.30903 1.06576 0.93706 1.25712 1.01831 0.94878 0.96242 1.70039 1.37313 1.34619 1.14804 0.85535 0.79874 0.77792 0.78300 1.20445 1.20063 1.19466 1.68061 1.20956 1.13002 1.29624 1.23289 0.88516 0.88022 0.99713 0.93888 0.90653 0.93001 0.90393 0.89314 0.78760 0.90807 0.89559 0.94151 0.89444 0.94366 0.96597 0.96701 0.92536 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.55 16 2 C -0.05 -0.93 6.11 29.85 0.18 -0.75 16 3 C -0.26 -7.07 5.17 -19.69 -0.10 -7.17 16 4 C 0.18 5.17 11.00 84.71 0.93 6.10 16 5 N -0.59 -22.09 9.11 -197.98 -1.80 -23.89 16 6 C 0.54 24.45 8.17 261.49 2.14 26.59 16 7 N -0.58 -27.28 2.56 -715.19 -1.83 -29.11 16 8 C 0.13 5.03 6.18 86.38 0.53 5.57 16 9 C -0.15 -5.40 10.24 71.98 0.74 -4.67 16 10 C 0.28 15.28 5.21 85.63 0.45 15.72 16 11 C -0.52 -30.43 8.94 25.60 0.23 -30.20 16 12 H 0.04 2.66 7.42 -2.91 -0.02 2.63 16 13 C 0.01 0.70 5.46 84.65 0.46 1.16 16 14 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 15 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 N -0.59 -27.07 9.11 -197.99 -1.80 -28.87 16 20 C 0.17 5.93 11.00 84.71 0.93 6.86 16 21 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.09 1.20 8.10 -2.38 -0.02 1.19 16 26 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 27 H 0.07 2.69 7.89 -2.39 -0.02 2.67 16 28 H 0.09 3.00 7.33 -2.39 -0.02 2.98 16 29 H 0.04 1.66 7.28 -2.38 -0.02 1.65 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.02 0.97 7.32 -2.39 -0.02 0.95 16 33 H 0.02 0.86 7.89 -2.39 -0.02 0.84 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.17 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -70.05 298.77 5.13 -64.92 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 7.20 Total: 17.66 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -5.15 Total: -137.59 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.05 5.13 -64.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.453 kcal (2) G-P(sol) polarization free energy of solvation -70.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds