Wall clock time and date at job start Sun Mar 29 2020 22:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 C 1.52995 * 109.47367 * 119.99922 * 2 1 3 5 5 C 1.50698 * 109.47126 * 174.99994 * 4 2 1 6 6 C 1.38184 * 120.39976 * 125.00670 * 5 4 2 7 7 C 1.39672 * 118.31929 * 180.02562 * 6 5 4 8 8 N 1.38518 * 120.53460 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99772 * 184.99586 * 8 7 6 10 10 C 1.36934 * 120.00073 * 4.99765 * 8 7 6 11 11 H 1.07999 * 120.00049 * 332.70957 * 10 8 7 12 12 C 1.38852 * 119.99903 * 152.71312 * 10 8 7 13 13 N 1.31533 * 120.00021 * 158.92875 * 12 10 8 14 14 Si 1.86794 * 119.99937 * 339.20382 * 12 10 8 15 15 H 1.48499 * 109.47408 * 84.67444 * 14 12 10 16 16 H 1.48502 * 109.47218 * 204.67530 * 14 12 10 17 17 H 1.48500 * 109.47306 * 324.67292 * 14 12 10 18 18 N 1.33061 * 118.92457 * 0.26533 * 7 6 5 19 19 C 1.31704 * 120.68594 * 359.44712 * 18 7 6 20 20 N 1.31830 * 121.84992 * 0.57130 * 19 18 7 21 21 H 1.08999 * 109.46874 * 300.00147 * 1 2 3 22 22 H 1.09000 * 109.46957 * 59.99914 * 1 2 3 23 23 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47282 * 240.00448 * 2 1 3 25 25 H 1.09006 * 109.47441 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47414 * 300.00365 * 3 2 1 27 27 H 1.08999 * 109.47452 * 60.00207 * 3 2 1 28 28 H 1.09007 * 109.47071 * 55.00077 * 4 2 1 29 29 H 1.08999 * 109.47331 * 295.00018 * 4 2 1 30 30 H 1.08001 * 120.83761 * 0.03423 * 6 5 4 31 31 H 1.08999 * 109.46749 * 270.00153 * 9 8 7 32 32 H 1.09001 * 109.46824 * 30.00066 * 9 8 7 33 33 H 1.09001 * 109.46851 * 150.00027 * 9 8 7 34 34 H 0.96995 * 119.99938 * 180.02562 * 13 12 10 35 35 H 1.08004 * 119.07662 * 180.26110 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 6 4.3199 -0.3476 2.2242 7 6 5.7075 -0.4698 2.1228 8 7 6.5310 -0.0022 3.1337 9 6 7.9862 -0.0366 2.9679 10 6 5.9849 0.4921 4.2881 11 1 4.9971 0.9286 4.2744 12 6 6.7012 0.4323 5.4761 13 7 6.3976 1.2405 6.4684 14 14 8.1008 -0.7906 5.6622 15 1 9.3453 -0.2082 5.0990 16 1 8.3040 -1.0951 7.1014 17 1 7.7659 -2.0409 4.9343 18 7 6.2259 -1.0375 1.0367 19 6 5.4454 -1.4878 0.0761 20 7 4.1326 -1.3873 0.1419 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7517 -0.1583 2.1369 30 1 3.8663 0.1117 3.0901 31 1 8.3721 -0.9851 3.3412 32 1 8.2340 0.0660 1.9114 33 1 8.4351 0.7839 3.5277 34 1 6.8982 1.1989 7.2982 35 1 5.8937 -1.9478 -0.7921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:06 Heat of formation + Delta-G solvation = 45.057498 kcal Electronic energy + Delta-G solvation = -16599.844738 eV Core-core repulsion = 14018.918939 eV Total energy + Delta-G solvation = -2580.925799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97128 -36.91608 -35.89995 -32.67734 -31.87100 -30.48855 -27.56812 -26.94842 -26.19051 -24.74923 -22.74426 -20.95128 -19.59352 -17.57595 -16.75068 -16.13229 -15.22861 -14.82415 -14.48638 -14.22327 -13.83384 -13.68946 -13.37008 -12.99297 -12.71564 -12.61302 -12.08497 -11.98587 -11.76723 -11.53096 -10.90773 -10.75750 -10.68412 -10.62927 -10.45049 -10.36182 -9.76231 -9.53879 -9.16781 -8.74245 -8.17852 -7.30147 -6.66058 -4.07296 2.06703 2.33041 3.00001 3.14866 3.18636 3.97301 4.15912 4.61233 4.88445 4.94209 5.08524 5.21523 5.22432 5.41812 5.72225 5.78468 5.91421 5.92653 6.00255 6.05537 6.07497 6.11762 6.18887 6.24679 6.36632 6.42130 6.51162 6.53994 6.62960 6.75496 7.27110 7.39142 7.85508 8.07527 8.37126 8.96029 9.06594 9.44438 10.43664 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.006970 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.050676 B = 4016.489137 C = 4530.079396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.060 4.060 5 C 0.187 3.813 6 C -0.283 4.283 7 C 0.394 3.606 8 N -0.431 5.431 9 C 0.074 3.926 10 C -0.323 4.323 11 H 0.113 0.887 12 C 0.060 3.940 13 N -0.853 5.853 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.268 1.268 18 N -0.607 5.607 19 C 0.326 3.674 20 N -0.599 5.599 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.279 0.721 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -2.050 -8.317 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.098 4.098 5 C 0.049 3.951 6 C -0.313 4.313 7 C 0.149 3.851 8 N -0.125 5.125 9 C -0.069 4.069 10 C -0.450 4.450 11 H 0.131 0.869 12 C -0.148 4.148 13 N -0.487 5.487 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.216 1.216 17 H -0.193 1.193 18 N -0.336 5.336 19 C 0.034 3.966 20 N -0.324 5.324 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.455 -2.220 -8.582 9.921 hybrid contribution 0.539 -0.218 1.095 1.240 sum -3.916 -2.438 -7.487 8.794 Atomic orbital electron populations 1.21851 0.95622 1.01424 1.01427 1.21001 0.94686 0.96217 0.98605 1.21810 1.01388 0.95911 1.00995 1.20532 0.89635 1.01039 0.98569 1.20935 0.95607 0.89962 0.88642 1.21783 0.93368 1.12887 1.03276 1.18556 0.88230 0.89735 0.88589 1.42510 1.03250 1.53309 1.13401 1.21909 0.81871 1.00538 1.02607 1.19153 1.05348 1.36779 0.83769 0.86944 1.25268 0.98209 0.96303 0.95010 1.69774 1.40664 1.32763 1.05509 0.86892 0.81779 0.82500 0.76908 1.19769 1.21569 1.19302 1.67818 1.41335 1.20265 1.04206 1.24125 0.86011 0.91866 0.94597 1.68004 1.12332 1.24786 1.27306 0.92836 0.92977 0.92835 0.90085 0.92771 0.93307 0.92876 0.90564 0.90689 0.84820 0.94120 0.90752 0.90920 0.91037 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.09 -1.17 2.85 -90.62 -0.26 -1.42 16 3 C -0.14 -2.00 9.01 37.16 0.33 -1.67 16 4 C -0.06 -0.91 5.12 -27.89 -0.14 -1.05 16 5 C 0.19 3.58 5.18 -82.31 -0.43 3.15 16 6 C -0.28 -6.14 9.00 -39.07 -0.35 -6.50 16 7 C 0.39 9.19 7.35 -154.72 -1.14 8.05 16 8 N -0.43 -10.50 2.86 -122.21 -0.35 -10.85 16 9 C 0.07 1.61 8.07 59.85 0.48 2.09 16 10 C -0.32 -8.46 9.40 -15.05 -0.14 -8.60 16 11 H 0.11 3.08 6.43 -52.49 -0.34 2.75 16 12 C 0.06 1.58 5.23 -17.45 -0.09 1.49 16 13 N -0.85 -23.16 13.96 55.49 0.77 -22.38 16 14 Si 0.89 20.36 24.02 -169.99 -4.08 16.27 16 15 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.33 6.88 56.52 0.39 -5.94 16 18 N -0.61 -13.21 9.31 -13.79 -0.13 -13.33 16 19 C 0.33 6.23 12.28 -92.20 -1.13 5.10 16 20 N -0.60 -11.52 9.94 -10.87 -0.11 -11.63 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.18 7.84 -51.93 -0.41 0.78 16 25 H 0.05 0.89 7.38 -51.93 -0.38 0.51 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.13 2.94 6.24 -52.49 -0.33 2.61 16 31 H 0.04 0.88 5.24 -51.93 -0.27 0.60 16 32 H 0.07 1.48 7.48 -51.93 -0.39 1.10 16 33 H 0.07 1.54 6.51 -51.93 -0.34 1.21 16 34 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 283.58 15.07 4.27 4.27 Total: -1.00 -28.00 283.58 -7.15 -35.15 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.00 Total: 3.11 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.52 Total: -0.61 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.19 Total: -58.19 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.08 Total: 16.27 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.00 -7.15 -35.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.207 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds