Wall clock time and date at job start Sun Mar 29 2020 22:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46950 * 2 1 4 4 C 1.52995 * 109.47367 * 119.99922 * 2 1 3 5 5 C 1.50698 * 109.47126 * 174.99994 * 4 2 1 6 6 C 1.38184 * 120.39976 * 125.00670 * 5 4 2 7 7 C 1.39672 * 118.31929 * 180.02562 * 6 5 4 8 8 N 1.38518 * 120.53460 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99772 * 184.99586 * 8 7 6 10 10 C 1.36934 * 120.00073 * 4.99765 * 8 7 6 11 11 H 1.07999 * 120.00049 * 332.70957 * 10 8 7 12 12 C 1.38852 * 119.99903 * 152.71312 * 10 8 7 13 13 N 1.31533 * 120.00021 * 158.92875 * 12 10 8 14 14 Si 1.86794 * 119.99937 * 339.20382 * 12 10 8 15 15 H 1.48499 * 109.47408 * 84.67444 * 14 12 10 16 16 H 1.48502 * 109.47218 * 204.67530 * 14 12 10 17 17 H 1.48500 * 109.47306 * 324.67292 * 14 12 10 18 18 N 1.33061 * 118.92457 * 0.26533 * 7 6 5 19 19 C 1.31704 * 120.68594 * 359.44712 * 18 7 6 20 20 N 1.31830 * 121.84992 * 0.57130 * 19 18 7 21 21 H 1.08999 * 109.46874 * 300.00147 * 1 2 3 22 22 H 1.09000 * 109.46957 * 59.99914 * 1 2 3 23 23 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47282 * 240.00448 * 2 1 3 25 25 H 1.09006 * 109.47441 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47414 * 300.00365 * 3 2 1 27 27 H 1.08999 * 109.47452 * 60.00207 * 3 2 1 28 28 H 1.09007 * 109.47071 * 55.00077 * 4 2 1 29 29 H 1.08999 * 109.47331 * 295.00018 * 4 2 1 30 30 H 1.08001 * 120.83761 * 0.03423 * 6 5 4 31 31 H 1.08999 * 109.46749 * 270.00153 * 9 8 7 32 32 H 1.09001 * 109.46824 * 30.00066 * 9 8 7 33 33 H 1.09001 * 109.46851 * 150.00027 * 9 8 7 34 34 H 0.96995 * 119.99938 * 180.02562 * 13 12 10 35 35 H 1.08004 * 119.07662 * 180.26110 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 6 4.3199 -0.3476 2.2242 7 6 5.7075 -0.4698 2.1228 8 7 6.5310 -0.0022 3.1337 9 6 7.9862 -0.0366 2.9679 10 6 5.9849 0.4921 4.2881 11 1 4.9971 0.9286 4.2744 12 6 6.7012 0.4323 5.4761 13 7 6.3976 1.2405 6.4684 14 14 8.1008 -0.7906 5.6622 15 1 9.3453 -0.2082 5.0990 16 1 8.3040 -1.0951 7.1014 17 1 7.7659 -2.0409 4.9343 18 7 6.2259 -1.0375 1.0367 19 6 5.4454 -1.4878 0.0761 20 7 4.1326 -1.3873 0.1419 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 1.7517 -0.1583 2.1369 30 1 3.8663 0.1117 3.0901 31 1 8.3721 -0.9851 3.3412 32 1 8.2340 0.0660 1.9114 33 1 8.4351 0.7839 3.5277 34 1 6.8982 1.1989 7.2982 35 1 5.8937 -1.9478 -0.7921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:05 Heat of formation + Delta-G solvation = 30.042246 kcal Electronic energy + Delta-G solvation = -16600.495848 eV Core-core repulsion = 14018.918939 eV Total energy + Delta-G solvation = -2581.576909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62799 -38.56430 -37.23632 -34.51245 -33.49101 -32.17090 -29.10320 -28.00010 -27.82144 -26.47363 -24.40099 -22.49862 -20.87481 -19.41536 -18.45420 -17.88351 -16.88334 -16.19387 -16.08470 -15.83798 -15.34404 -15.14783 -14.82834 -14.55602 -14.46673 -14.21256 -13.52311 -13.29908 -13.03421 -12.67243 -12.60532 -12.45685 -12.32362 -11.93184 -11.78815 -11.51717 -11.44870 -11.25444 -10.98165 -10.42598 -9.83823 -9.11207 -8.62404 -6.07236 0.43896 0.62693 1.19963 1.31727 1.37945 2.09790 2.41472 2.75593 3.25299 3.46980 3.65589 3.94911 4.11828 4.13251 4.27609 4.37057 4.42019 4.57379 4.69518 4.73076 4.81571 4.82957 4.89314 4.98205 5.02354 5.08165 5.17083 5.30712 5.42314 5.48413 5.58417 5.69805 5.93220 6.32954 6.51656 7.06828 7.24395 7.70325 8.51602 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.006970 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.050676 B = 4016.489137 C = 4530.079396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.061 4.061 5 C 0.200 3.800 6 C -0.309 4.309 7 C 0.384 3.616 8 N -0.455 5.455 9 C 0.076 3.924 10 C -0.330 4.330 11 H 0.083 0.917 12 C 0.021 3.979 13 N -0.896 5.896 14 Si 0.946 3.054 15 H -0.246 1.246 16 H -0.286 1.286 17 H -0.280 1.280 18 N -0.617 5.617 19 C 0.325 3.675 20 N -0.592 5.592 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.284 0.716 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 -3.170 -10.138 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.099 4.099 5 C 0.060 3.940 6 C -0.339 4.339 7 C 0.140 3.860 8 N -0.151 5.151 9 C -0.066 4.066 10 C -0.458 4.458 11 H 0.101 0.899 12 C -0.183 4.183 13 N -0.532 5.532 14 Si 0.772 3.228 15 H -0.170 1.170 16 H -0.212 1.212 17 H -0.206 1.206 18 N -0.345 5.345 19 C 0.034 3.966 20 N -0.316 5.316 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.832 -3.345 -10.444 11.984 hybrid contribution 0.492 0.085 1.437 1.521 sum -4.340 -3.260 -9.006 10.516 Atomic orbital electron populations 1.21798 0.93087 1.02463 1.02386 1.20961 0.96703 0.95224 0.97002 1.21798 0.99254 0.96776 1.02058 1.20695 0.86913 1.02396 0.99921 1.21506 0.97452 0.87705 0.87336 1.21878 0.93410 1.14447 1.04130 1.18902 0.88856 0.89480 0.88713 1.42501 1.04225 1.55124 1.13216 1.21949 0.80575 1.00555 1.03567 1.18957 1.04657 1.37080 0.85095 0.89905 1.25838 1.00582 0.97423 0.94494 1.69843 1.42590 1.34465 1.06267 0.86022 0.80251 0.79756 0.76803 1.17043 1.21246 1.20566 1.67893 1.41913 1.20553 1.04168 1.25043 0.86034 0.90520 0.94963 1.68168 1.12521 1.24090 1.26824 0.92354 0.91605 0.91794 0.90823 0.95914 0.91414 0.92727 0.88904 0.90300 0.86150 0.93891 0.89350 0.90935 0.90650 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 2 C -0.08 -1.98 2.85 -10.79 -0.03 -2.01 16 3 C -0.14 -3.75 9.01 71.98 0.65 -3.10 16 4 C -0.06 -1.77 5.12 29.85 0.15 -1.61 16 5 C 0.20 7.45 5.18 42.44 0.22 7.67 16 6 C -0.31 -13.61 9.00 22.60 0.20 -13.40 16 7 C 0.38 17.99 7.35 133.16 0.98 18.97 16 8 N -0.45 -22.40 2.86 -540.57 -1.55 -23.95 16 9 C 0.08 3.25 8.07 127.77 1.03 4.28 16 10 C -0.33 -17.90 9.40 84.04 0.79 -17.11 16 11 H 0.08 4.84 6.43 -2.91 -0.02 4.82 16 12 C 0.02 1.13 5.23 84.88 0.44 1.57 16 13 N -0.90 -50.01 13.96 21.65 0.30 -49.71 16 14 Si 0.95 42.01 24.02 68.60 1.65 43.66 16 15 H -0.25 -9.83 6.54 99.48 0.65 -9.18 16 16 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.86 6.88 99.48 0.68 -12.17 16 18 N -0.62 -25.96 9.31 -197.55 -1.84 -27.80 16 19 C 0.32 11.62 12.28 180.90 2.22 13.84 16 20 N -0.59 -21.50 9.94 -188.31 -1.87 -23.37 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.96 7.84 -2.39 -0.02 1.94 16 25 H 0.02 0.72 7.38 -2.38 -0.02 0.70 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 2.41 8.14 -2.38 -0.02 2.40 16 29 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 30 H 0.12 5.57 6.24 -2.91 -0.02 5.55 16 31 H 0.04 1.79 5.24 -2.39 -0.01 1.78 16 32 H 0.09 3.43 7.48 -2.39 -0.02 3.41 16 33 H 0.07 3.03 6.51 -2.39 -0.02 3.02 16 34 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.22 5.71 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -60.69 283.58 5.01 -55.68 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.99 Total: 18.34 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.32 Total: 7.15 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -4.96 Total: -124.83 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.65 Total: 43.66 kcal Total: -60.69 5.01 -55.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.726 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds