Wall clock time and date at job start Sun Mar 29 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00461 * 2 1 4 4 H 1.07994 * 120.00440 * 203.93599 * 3 2 1 5 5 C 1.38857 * 119.99643 * 23.93805 * 3 2 1 6 6 N 1.31533 * 119.99764 * 10.48374 * 5 3 2 7 7 Si 1.86802 * 120.00048 * 190.49077 * 5 3 2 8 8 H 1.48505 * 109.47314 * 89.99460 * 7 5 3 9 9 H 1.48495 * 109.46957 * 209.99684 * 7 5 3 10 10 H 1.48496 * 109.47018 * 329.99923 * 7 5 3 11 11 C 1.38518 * 119.99954 * 180.02562 * 2 1 3 12 12 C 1.39713 * 120.53905 * 185.27992 * 11 2 1 13 13 C 1.38134 * 118.31796 * 180.23667 * 12 11 2 14 14 C 1.50705 * 120.39676 * 179.75535 * 13 12 11 15 15 C 1.53003 * 109.46887 * 74.72784 * 14 13 12 16 16 C 1.52995 * 109.47563 * 314.72511 * 14 13 12 17 17 C 1.53002 * 109.46839 * 194.72273 * 14 13 12 18 18 N 1.32558 * 119.20132 * 359.48886 * 13 12 11 19 19 C 1.31798 * 121.02355 * 0.26825 * 18 13 12 20 20 N 1.31734 * 121.84715 * 359.97438 * 19 18 13 21 21 H 1.09001 * 109.47321 * 273.79169 * 1 2 3 22 22 H 1.08999 * 109.47397 * 33.79195 * 1 2 3 23 23 H 1.09005 * 109.47505 * 153.78964 * 1 2 3 24 24 H 0.97001 * 119.99384 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.83849 * 0.02562 * 12 11 2 26 26 H 1.08995 * 109.46823 * 299.99736 * 15 14 13 27 27 H 1.09004 * 109.46953 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.47013 * 59.99396 * 15 14 13 29 29 H 1.08994 * 109.47099 * 180.02562 * 16 14 13 30 30 H 1.09004 * 109.46797 * 300.00070 * 16 14 13 31 31 H 1.09005 * 109.47056 * 59.99723 * 16 14 13 32 32 H 1.08991 * 109.47354 * 300.00255 * 17 14 13 33 33 H 1.09000 * 109.47264 * 60.00645 * 17 14 13 34 34 H 1.09004 * 109.47121 * 180.02562 * 17 14 13 35 35 H 1.07995 * 119.07372 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1600 1.2260 -0.3794 5 6 1.5450 2.3366 0.4879 6 7 0.4031 2.2555 1.1357 7 14 2.3532 4.0001 0.2243 8 1 1.8724 4.5872 -1.0522 9 1 2.0022 4.9046 1.3484 10 1 3.8273 3.8306 0.1669 11 6 2.1575 -1.1996 -0.0005 12 6 3.5502 -1.2154 0.1102 13 6 4.1946 -2.4372 0.0997 14 6 5.6958 -2.5085 0.2107 15 6 6.1146 -2.2211 1.6540 16 6 6.3260 -1.4701 -0.7195 17 6 6.1709 -3.9067 -0.1894 18 7 3.4761 -3.5464 -0.0038 19 6 2.1627 -3.4983 -0.1016 20 7 1.5069 -2.3557 -0.1007 21 1 -0.3634 0.0680 1.0254 22 1 -0.3634 0.8540 -0.5715 23 1 -0.3634 -0.9220 -0.4539 24 1 -0.0194 3.0595 1.4762 25 1 4.1090 -0.2954 0.1982 26 1 5.7762 -1.2250 1.9390 27 1 7.2005 -2.2731 1.7344 28 1 5.6657 -2.9609 2.3167 29 1 7.4118 -1.5220 -0.6395 30 1 6.0276 -1.6749 -1.7477 31 1 5.9875 -0.4739 -0.4345 32 1 5.7220 -4.6465 0.4734 33 1 5.8726 -4.1115 -1.2176 34 1 7.2567 -3.9585 -0.1086 35 1 1.6084 -4.4215 -0.1840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:09 Heat of formation + Delta-G solvation = 44.613042 kcal Electronic energy + Delta-G solvation = -16874.344403 eV Core-core repulsion = 14293.399331 eV Total energy + Delta-G solvation = -2580.945072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89420 -36.93791 -35.84236 -32.44507 -30.88457 -29.80777 -26.95361 -26.89677 -26.62966 -24.49053 -22.86733 -21.70855 -19.00799 -17.43428 -16.50242 -15.87470 -14.96254 -14.32260 -14.08523 -14.05532 -13.58952 -13.44726 -13.24577 -13.00291 -12.55874 -11.94146 -11.77251 -11.56190 -11.32551 -11.30226 -10.95789 -10.76921 -10.65968 -10.59304 -10.52359 -10.49887 -9.87729 -9.34121 -9.11931 -8.63058 -7.96392 -7.17070 -6.52922 -4.01709 2.23988 2.53237 3.08587 3.09145 3.12374 3.88550 4.63693 4.69549 4.86801 5.09865 5.17303 5.45201 5.45531 5.59960 5.90007 5.91453 6.07319 6.11756 6.18201 6.23774 6.29951 6.36456 6.50359 6.62901 6.64970 6.72012 6.76490 6.89240 6.91968 7.22122 7.26617 7.52398 7.86749 8.16035 8.55197 9.09188 9.24459 9.66633 10.45025 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.008307 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.078042 B = 3369.846381 C = 4181.611961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.406 5.406 3 C -0.313 4.313 4 H 0.099 0.901 5 C 0.035 3.965 6 N -0.864 5.864 7 Si 0.932 3.068 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.381 3.619 12 C -0.291 4.291 13 C 0.192 3.808 14 C -0.016 4.016 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.120 4.120 18 N -0.607 5.607 19 C 0.325 3.675 20 N -0.607 5.607 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.273 0.727 25 H 0.128 0.872 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -4.284 -1.373 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.095 5.095 3 C -0.443 4.443 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.499 5.499 7 Si 0.758 3.242 8 H -0.200 1.200 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.134 3.866 12 C -0.322 4.322 13 C 0.054 3.946 14 C -0.017 4.017 15 C -0.191 4.191 16 C -0.195 4.195 17 C -0.177 4.177 18 N -0.333 5.333 19 C 0.033 3.967 20 N -0.336 5.336 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.358 -4.599 -1.333 7.959 hybrid contribution 0.516 1.720 0.042 1.796 sum 6.874 -2.879 -1.291 7.563 Atomic orbital electron populations 1.21428 0.79555 0.99125 1.01836 1.42479 1.05285 1.01198 1.60511 1.19664 1.00711 0.83878 1.40021 0.88337 1.25465 0.96519 1.00431 0.94785 1.70085 1.16964 1.30061 1.32798 0.85829 0.79587 0.80605 0.78194 1.20013 1.20561 1.19092 1.18563 0.88696 0.86179 0.93142 1.21563 0.94369 0.99132 1.17167 1.20758 0.94609 0.88476 0.90762 1.19375 0.89665 0.96613 0.96021 1.21823 1.00393 1.02055 0.94862 1.21891 0.99626 0.98873 0.99111 1.21601 0.98669 0.95583 1.01863 1.68007 1.07962 1.31297 1.26010 1.24077 0.87623 0.94547 0.90454 1.67787 1.41289 0.98007 1.26557 0.92372 0.92218 0.93619 0.91702 0.85440 0.92273 0.92567 0.92682 0.92611 0.92751 0.91980 0.91818 0.92899 0.93797 0.81195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.01 8.79 59.84 0.53 3.54 16 2 N -0.41 -10.43 3.11 -122.21 -0.38 -10.81 16 3 C -0.31 -8.04 8.95 -15.04 -0.13 -8.18 16 4 H 0.10 2.44 6.41 -52.49 -0.34 2.10 16 5 C 0.03 0.87 5.14 -17.45 -0.09 0.78 16 6 N -0.86 -22.38 10.64 55.49 0.59 -21.79 16 7 Si 0.93 19.23 29.57 -169.99 -5.03 14.20 16 8 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 11 C 0.38 9.36 7.36 -154.72 -1.14 8.23 16 12 C -0.29 -6.53 8.35 -39.07 -0.33 -6.86 16 13 C 0.19 3.86 5.56 -82.31 -0.46 3.40 16 14 C -0.02 -0.25 0.88 -155.66 -0.14 -0.39 16 15 C -0.13 -1.96 8.41 37.16 0.31 -1.65 16 16 C -0.14 -2.00 8.10 37.16 0.30 -1.70 16 17 C -0.12 -1.73 7.83 37.16 0.29 -1.44 16 18 N -0.61 -12.39 9.19 -10.88 -0.10 -12.49 16 19 C 0.33 6.67 12.28 -92.20 -1.13 5.53 16 20 N -0.61 -14.13 9.18 -13.79 -0.13 -14.26 16 21 H 0.06 1.48 7.41 -51.93 -0.38 1.10 16 22 H 0.06 1.46 7.25 -51.93 -0.38 1.09 16 23 H 0.05 1.04 7.22 -51.93 -0.37 0.67 16 24 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.13 2.82 5.22 -52.49 -0.27 2.55 16 26 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 32 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -27.73 286.16 -7.74 -35.47 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.02 Total: 4.08 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.99 Total: 1.28 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.02 Total: -59.35 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.73 -7.74 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.085 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds