Wall clock time and date at job start Sun Mar 29 2020 22:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 120.00461 * 2 1 4 4 H 1.07994 * 120.00440 * 203.93599 * 3 2 1 5 5 C 1.38857 * 119.99643 * 23.93805 * 3 2 1 6 6 N 1.31533 * 119.99764 * 10.48374 * 5 3 2 7 7 Si 1.86802 * 120.00048 * 190.49077 * 5 3 2 8 8 H 1.48505 * 109.47314 * 89.99460 * 7 5 3 9 9 H 1.48495 * 109.46957 * 209.99684 * 7 5 3 10 10 H 1.48496 * 109.47018 * 329.99923 * 7 5 3 11 11 C 1.38518 * 119.99954 * 180.02562 * 2 1 3 12 12 C 1.39713 * 120.53905 * 185.27992 * 11 2 1 13 13 C 1.38134 * 118.31796 * 180.23667 * 12 11 2 14 14 C 1.50705 * 120.39676 * 179.75535 * 13 12 11 15 15 C 1.53003 * 109.46887 * 74.72784 * 14 13 12 16 16 C 1.52995 * 109.47563 * 314.72511 * 14 13 12 17 17 C 1.53002 * 109.46839 * 194.72273 * 14 13 12 18 18 N 1.32558 * 119.20132 * 359.48886 * 13 12 11 19 19 C 1.31798 * 121.02355 * 0.26825 * 18 13 12 20 20 N 1.31734 * 121.84715 * 359.97438 * 19 18 13 21 21 H 1.09001 * 109.47321 * 273.79169 * 1 2 3 22 22 H 1.08999 * 109.47397 * 33.79195 * 1 2 3 23 23 H 1.09005 * 109.47505 * 153.78964 * 1 2 3 24 24 H 0.97001 * 119.99384 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.83849 * 0.02562 * 12 11 2 26 26 H 1.08995 * 109.46823 * 299.99736 * 15 14 13 27 27 H 1.09004 * 109.46953 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.47013 * 59.99396 * 15 14 13 29 29 H 1.08994 * 109.47099 * 180.02562 * 16 14 13 30 30 H 1.09004 * 109.46797 * 300.00070 * 16 14 13 31 31 H 1.09005 * 109.47056 * 59.99723 * 16 14 13 32 32 H 1.08991 * 109.47354 * 300.00255 * 17 14 13 33 33 H 1.09000 * 109.47264 * 60.00645 * 17 14 13 34 34 H 1.09004 * 109.47121 * 180.02562 * 17 14 13 35 35 H 1.07995 * 119.07372 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1600 1.2260 -0.3794 5 6 1.5450 2.3366 0.4879 6 7 0.4031 2.2555 1.1357 7 14 2.3532 4.0001 0.2243 8 1 1.8724 4.5872 -1.0522 9 1 2.0022 4.9046 1.3484 10 1 3.8273 3.8306 0.1669 11 6 2.1575 -1.1996 -0.0005 12 6 3.5502 -1.2154 0.1102 13 6 4.1946 -2.4372 0.0997 14 6 5.6958 -2.5085 0.2107 15 6 6.1146 -2.2211 1.6540 16 6 6.3260 -1.4701 -0.7195 17 6 6.1709 -3.9067 -0.1894 18 7 3.4761 -3.5464 -0.0038 19 6 2.1627 -3.4983 -0.1016 20 7 1.5069 -2.3557 -0.1007 21 1 -0.3634 0.0680 1.0254 22 1 -0.3634 0.8540 -0.5715 23 1 -0.3634 -0.9220 -0.4539 24 1 -0.0194 3.0595 1.4762 25 1 4.1090 -0.2954 0.1982 26 1 5.7762 -1.2250 1.9390 27 1 7.2005 -2.2731 1.7344 28 1 5.6657 -2.9609 2.3167 29 1 7.4118 -1.5220 -0.6395 30 1 6.0276 -1.6749 -1.7477 31 1 5.9875 -0.4739 -0.4345 32 1 5.7220 -4.6465 0.4734 33 1 5.8726 -4.1115 -1.2176 34 1 7.2567 -3.9585 -0.1086 35 1 1.6084 -4.4215 -0.1840 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:08 Heat of formation + Delta-G solvation = 31.175920 kcal Electronic energy + Delta-G solvation = -16874.927081 eV Core-core repulsion = 14293.399331 eV Total energy + Delta-G solvation = -2581.527750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59245 -38.56682 -37.42393 -34.27272 -32.60624 -31.55309 -28.52383 -28.14858 -28.07776 -26.29994 -24.53723 -23.40968 -20.55483 -19.20556 -18.25513 -17.58772 -16.61466 -15.94910 -15.81091 -15.62242 -15.12309 -15.01558 -14.78002 -14.47207 -14.24697 -13.37242 -13.13039 -13.04622 -12.85096 -12.69805 -12.59572 -12.50131 -12.12802 -11.99163 -11.95140 -11.83182 -11.63648 -11.04262 -10.92191 -10.36257 -9.70832 -9.03189 -8.39504 -5.96307 0.54412 0.76833 1.40386 1.46224 1.53329 2.17030 2.84900 2.86802 3.37489 3.42121 3.73542 4.02935 4.17415 4.24027 4.43939 4.66756 4.73093 4.81579 4.85732 4.89476 4.93549 4.95170 5.05391 5.08430 5.14907 5.23342 5.26983 5.28370 5.32717 5.47167 5.60512 5.79034 6.07404 6.35657 6.71063 7.21616 7.43763 7.86493 8.59926 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.008307 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.078042 B = 3369.846381 C = 4181.611961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.432 5.432 3 C -0.336 4.336 4 H 0.099 0.901 5 C -0.008 4.008 6 N -0.897 5.897 7 Si 1.000 3.000 8 H -0.270 1.270 9 H -0.278 1.278 10 H -0.257 1.257 11 C 0.365 3.635 12 C -0.309 4.309 13 C 0.199 3.801 14 C -0.020 4.020 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.113 4.113 18 N -0.601 5.601 19 C 0.321 3.679 20 N -0.626 5.626 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.275 0.725 25 H 0.125 0.875 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -4.949 -1.619 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.124 5.124 3 C -0.464 4.464 4 H 0.117 0.883 5 C -0.211 4.211 6 N -0.534 5.534 7 Si 0.822 3.178 8 H -0.195 1.195 9 H -0.204 1.204 10 H -0.181 1.181 11 C 0.120 3.880 12 C -0.340 4.340 13 C 0.059 3.941 14 C -0.021 4.021 15 C -0.187 4.187 16 C -0.191 4.191 17 C -0.170 4.170 18 N -0.325 5.325 19 C 0.030 3.970 20 N -0.355 5.355 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.143 0.857 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.605 -5.310 -1.586 10.235 hybrid contribution -0.119 1.706 0.119 1.714 sum 8.485 -3.604 -1.467 9.335 Atomic orbital electron populations 1.21147 0.79666 0.98884 1.00315 1.42624 1.05435 1.01703 1.62636 1.19903 1.01087 0.84523 1.40914 0.88314 1.26352 0.96995 1.03618 0.94133 1.70191 1.18301 1.30972 1.33889 0.84822 0.79002 0.75949 0.78046 1.19500 1.20358 1.18122 1.19002 0.89748 0.86445 0.92821 1.21662 0.93680 1.00142 1.18488 1.21502 0.96955 0.87431 0.88199 1.19599 0.86696 0.98372 0.97446 1.21802 1.02541 1.00916 0.93455 1.21872 1.01573 0.97553 0.98138 1.21553 1.00659 0.93855 1.00965 1.68177 1.07964 1.31227 1.25181 1.24911 0.88109 0.95070 0.88915 1.67840 1.42005 0.98381 1.27280 0.94418 0.93264 0.92853 0.91573 0.85749 0.93670 0.89149 0.93430 0.89293 0.93447 0.93230 0.92679 0.93721 0.90598 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.24 8.79 127.77 1.12 8.36 16 2 N -0.43 -22.86 3.11 -540.57 -1.68 -24.54 16 3 C -0.34 -17.63 8.95 84.04 0.75 -16.88 16 4 H 0.10 5.00 6.41 -2.91 -0.02 4.98 16 5 C -0.01 -0.40 5.14 84.89 0.44 0.03 16 6 N -0.90 -47.71 10.64 21.65 0.23 -47.48 16 7 Si 1.00 39.57 29.57 68.60 2.03 41.59 16 8 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 9 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 11 C 0.37 18.21 7.36 133.18 0.98 19.19 16 12 C -0.31 -13.91 8.35 22.60 0.19 -13.72 16 13 C 0.20 7.75 5.56 42.43 0.24 7.98 16 14 C -0.02 -0.60 0.88 -52.93 -0.05 -0.64 16 15 C -0.13 -3.46 8.41 71.98 0.61 -2.85 16 16 C -0.13 -3.55 8.10 71.98 0.58 -2.97 16 17 C -0.11 -2.89 7.83 71.98 0.56 -2.32 16 18 N -0.60 -23.54 9.19 -188.32 -1.73 -25.27 16 19 C 0.32 12.71 12.28 180.90 2.22 14.93 16 20 N -0.63 -29.06 9.18 -197.54 -1.81 -30.87 16 21 H 0.04 2.00 7.41 -2.39 -0.02 1.99 16 22 H 0.05 2.51 7.25 -2.39 -0.02 2.49 16 23 H 0.05 2.52 7.22 -2.38 -0.02 2.50 16 24 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 25 H 0.12 5.60 5.22 -2.91 -0.02 5.59 16 26 H 0.04 1.32 8.11 -2.39 -0.02 1.30 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.44 6.80 -2.38 -0.02 1.42 16 32 H 0.05 1.50 7.88 -2.39 -0.02 1.48 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.21 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -60.18 286.16 5.75 -54.43 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.07 Total: 21.03 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 7.64 Total: 11.11 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -4.99 Total: -128.16 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.18 5.75 -54.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.605 kcal (2) G-P(sol) polarization free energy of solvation -60.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds