Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46750 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47037 * 180.02562 * 4 3 2 6 6 C 1.36896 * 119.99791 * 265.31105 * 5 4 3 7 7 H 1.07994 * 120.00482 * 6.15655 * 6 5 4 8 8 C 1.38827 * 119.99657 * 186.15772 * 6 5 4 9 9 N 1.31560 * 120.00137 * 6.87737 * 8 6 5 10 10 Si 1.86802 * 119.99838 * 186.86882 * 8 6 5 11 11 H 1.48507 * 109.46878 * 90.00319 * 10 8 6 12 12 H 1.48493 * 109.47225 * 210.00050 * 10 8 6 13 13 H 1.48502 * 109.47186 * 330.00555 * 10 8 6 14 14 C 1.38878 * 119.99735 * 85.30353 * 5 4 3 15 15 N 1.32603 * 120.16906 * 263.29687 * 14 5 4 16 16 N 1.28350 * 122.05651 * 180.30607 * 15 14 5 17 17 C 1.31887 * 122.28380 * 359.94539 * 16 15 14 18 18 C 1.38772 * 120.03299 * 0.05025 * 17 16 15 19 19 C 1.38604 * 118.05071 * 359.97438 * 18 17 16 20 20 C 1.50703 * 121.04522 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47142 * 299.99862 * 1 2 3 23 23 H 1.08998 * 109.47104 * 59.99657 * 1 2 3 24 24 H 1.08996 * 109.46719 * 240.00357 * 2 1 3 25 25 H 1.08998 * 109.47104 * 120.00343 * 2 1 3 26 26 H 1.09005 * 109.46352 * 60.00257 * 3 2 1 27 27 H 1.08998 * 109.47426 * 300.00145 * 3 2 1 28 28 H 1.09000 * 109.47319 * 60.00238 * 4 3 2 29 29 H 1.09006 * 109.47083 * 299.99952 * 4 3 2 30 30 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 31 31 H 1.08000 * 119.98063 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.97644 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.46997 * 274.82041 * 20 19 18 34 34 H 1.08991 * 109.47280 * 34.82674 * 20 19 18 35 35 H 1.08998 * 109.47056 * 154.82459 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3775 3.4373 -1.1814 7 1 4.1763 2.9412 -2.1193 8 6 4.9598 4.6976 -1.1738 9 7 5.3289 5.2448 -0.0358 10 14 5.2193 5.6162 -2.7795 11 1 4.0222 6.4438 -3.0753 12 1 6.4109 6.4943 -2.6604 13 1 5.4309 4.6409 -3.8792 14 6 4.1976 3.5104 1.1990 15 7 3.2383 4.3257 1.6152 16 7 3.3314 4.9824 2.7141 17 6 4.3846 4.8903 3.5026 18 6 5.4426 4.0625 3.1545 19 6 5.3502 3.3502 1.9691 20 6 6.4594 2.4312 1.5261 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6767 1.9564 -0.8899 28 1 3.9330 0.9287 -0.8909 29 1 3.9337 0.9284 0.8892 30 1 5.7361 6.1252 -0.0305 31 1 4.4238 5.4597 4.4195 32 1 6.3126 3.9759 3.7886 33 1 7.2145 3.0056 0.9895 34 1 6.9125 1.9614 2.3990 35 1 6.0534 1.6620 0.8692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = 63.189589 kcal Electronic energy + Delta-G solvation = -17152.351605 eV Core-core repulsion = 14572.212072 eV Total energy + Delta-G solvation = -2580.139533 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61081 -36.51879 -34.30530 -32.85633 -31.47291 -30.32753 -27.95975 -26.98976 -24.64033 -23.21743 -21.63166 -21.12504 -20.32450 -17.87899 -16.26350 -15.38057 -14.95072 -14.93524 -14.26553 -13.80834 -13.56926 -13.09528 -12.93621 -12.39116 -12.13306 -12.00608 -11.86888 -11.44285 -11.28164 -11.14562 -10.84756 -10.76653 -10.59145 -10.50380 -10.14079 -9.91083 -9.54001 -9.21940 -8.66703 -8.35636 -8.18564 -7.13707 -5.87874 -3.41631 2.22008 2.43109 3.32495 3.37735 3.39969 4.30547 4.86651 4.98142 5.30416 5.35048 5.39687 5.54441 5.59138 5.77318 5.85600 5.87955 5.98312 6.10581 6.19809 6.20490 6.23622 6.32047 6.38925 6.45551 6.47596 6.53198 6.84188 6.86589 7.04213 7.06800 7.42266 7.46923 7.56502 8.10718 9.06936 9.60238 9.98747 10.30511 11.11737 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.011713 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.913052 B = 2390.010316 C = 3334.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.156 3.844 5 N -0.549 5.549 6 C -0.255 4.255 7 H 0.087 0.913 8 C 0.002 3.998 9 N -0.905 5.905 10 Si 0.922 3.078 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.440 3.560 15 N -0.274 5.274 16 N -0.254 5.254 17 C -0.003 4.003 18 C -0.143 4.143 19 C -0.058 4.058 20 C -0.091 4.091 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.261 0.739 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -8.170 3.222 8.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.030 3.970 5 N -0.269 5.269 6 C -0.382 4.382 7 H 0.105 0.895 8 C -0.196 4.196 9 N -0.550 5.550 10 Si 0.752 3.248 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.205 3.795 15 N -0.120 5.120 16 N -0.096 5.096 17 C -0.170 4.170 18 C -0.172 4.172 19 C -0.073 4.073 20 C -0.149 4.149 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.781 -7.324 2.890 8.073 hybrid contribution 1.697 0.369 -0.527 1.815 sum -0.084 -6.955 2.363 7.345 Atomic orbital electron populations 1.21756 0.96503 1.00629 1.01808 1.21491 0.95392 0.97912 1.01174 1.22239 0.98266 0.94901 1.02675 1.20914 0.92097 0.84190 0.99793 1.41274 1.74752 1.09427 1.01471 1.19349 1.34713 0.99958 0.84215 0.89489 1.24855 0.99353 0.97814 0.97598 1.69325 1.44914 1.16979 1.23783 0.85969 0.77342 0.79593 0.81946 1.21282 1.21714 1.20402 1.18829 0.87945 0.86754 0.85972 1.72947 1.27782 1.04998 1.06226 1.72650 1.21798 1.15465 0.99691 1.23614 0.93070 0.99516 1.00778 1.21767 0.99450 0.98522 0.97440 1.21148 0.95976 0.96553 0.93613 1.20480 0.96423 0.98079 0.99876 0.93496 0.92963 0.92881 0.92426 0.92704 0.92303 0.91735 0.91922 0.94296 0.92694 0.83998 0.86317 0.90871 0.93513 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.14 -2.55 5.52 -26.73 -0.15 -2.69 16 4 C 0.16 3.02 4.91 -4.04 -0.02 3.00 16 5 N -0.55 -13.21 1.86 -114.90 -0.21 -13.42 16 6 C -0.25 -6.64 9.76 -15.07 -0.15 -6.78 16 7 H 0.09 2.17 7.84 -52.49 -0.41 1.76 16 8 C 0.00 0.04 5.40 -17.45 -0.09 -0.05 16 9 N -0.91 -25.53 9.82 55.49 0.54 -24.98 16 10 Si 0.92 21.82 29.56 -169.99 -5.02 16.79 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.44 10.95 3.69 -154.82 -0.57 10.38 16 15 N -0.27 -7.29 11.29 31.23 0.35 -6.94 16 16 N -0.25 -6.29 11.50 30.58 0.35 -5.94 16 17 C 0.00 -0.06 11.31 -17.33 -0.20 -0.26 16 18 C -0.14 -2.88 9.94 -39.25 -0.39 -3.27 16 19 C -0.06 -1.29 4.89 -104.00 -0.51 -1.80 16 20 C -0.09 -1.74 9.90 36.01 0.36 -1.39 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.13 8.00 -51.93 -0.42 0.72 16 29 H 0.04 0.71 7.73 -51.93 -0.40 0.30 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 35 H 0.07 1.32 6.42 -51.93 -0.33 0.99 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -30.44 294.20 -6.41 -36.85 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.35 Total: -0.52 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.51 Total: -6.28 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.04 Total: -51.28 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.44 -6.41 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.042 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds