Wall clock time and date at job start Sun Mar 29 2020 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46750 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47037 * 180.02562 * 4 3 2 6 6 C 1.36896 * 119.99791 * 265.31105 * 5 4 3 7 7 H 1.07994 * 120.00482 * 6.15655 * 6 5 4 8 8 C 1.38827 * 119.99657 * 186.15772 * 6 5 4 9 9 N 1.31560 * 120.00137 * 6.87737 * 8 6 5 10 10 Si 1.86802 * 119.99838 * 186.86882 * 8 6 5 11 11 H 1.48507 * 109.46878 * 90.00319 * 10 8 6 12 12 H 1.48493 * 109.47225 * 210.00050 * 10 8 6 13 13 H 1.48502 * 109.47186 * 330.00555 * 10 8 6 14 14 C 1.38878 * 119.99735 * 85.30353 * 5 4 3 15 15 N 1.32603 * 120.16906 * 263.29687 * 14 5 4 16 16 N 1.28350 * 122.05651 * 180.30607 * 15 14 5 17 17 C 1.31887 * 122.28380 * 359.94539 * 16 15 14 18 18 C 1.38772 * 120.03299 * 0.05025 * 17 16 15 19 19 C 1.38604 * 118.05071 * 359.97438 * 18 17 16 20 20 C 1.50703 * 121.04522 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47142 * 299.99862 * 1 2 3 23 23 H 1.08998 * 109.47104 * 59.99657 * 1 2 3 24 24 H 1.08996 * 109.46719 * 240.00357 * 2 1 3 25 25 H 1.08998 * 109.47104 * 120.00343 * 2 1 3 26 26 H 1.09005 * 109.46352 * 60.00257 * 3 2 1 27 27 H 1.08998 * 109.47426 * 300.00145 * 3 2 1 28 28 H 1.09000 * 109.47319 * 60.00238 * 4 3 2 29 29 H 1.09006 * 109.47083 * 299.99952 * 4 3 2 30 30 H 0.97002 * 120.00052 * 179.97438 * 9 8 6 31 31 H 1.08000 * 119.98063 * 180.02562 * 17 16 15 32 32 H 1.07998 * 120.97644 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.46997 * 274.82041 * 20 19 18 34 34 H 1.08991 * 109.47280 * 34.82674 * 20 19 18 35 35 H 1.08998 * 109.47056 * 154.82459 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3775 3.4373 -1.1814 7 1 4.1763 2.9412 -2.1193 8 6 4.9598 4.6976 -1.1738 9 7 5.3289 5.2448 -0.0358 10 14 5.2193 5.6162 -2.7795 11 1 4.0222 6.4438 -3.0753 12 1 6.4109 6.4943 -2.6604 13 1 5.4309 4.6409 -3.8792 14 6 4.1976 3.5104 1.1990 15 7 3.2383 4.3257 1.6152 16 7 3.3314 4.9824 2.7141 17 6 4.3846 4.8903 3.5026 18 6 5.4426 4.0625 3.1545 19 6 5.3502 3.3502 1.9691 20 6 6.4594 2.4312 1.5261 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6767 1.9564 -0.8899 28 1 3.9330 0.9287 -0.8909 29 1 3.9337 0.9284 0.8892 30 1 5.7361 6.1252 -0.0305 31 1 4.4238 5.4597 4.4195 32 1 6.3126 3.9759 3.7886 33 1 7.2145 3.0056 0.9895 34 1 6.9125 1.9614 2.3990 35 1 6.0534 1.6620 0.8692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:38 Heat of formation + Delta-G solvation = 45.872132 kcal Electronic energy + Delta-G solvation = -17153.102546 eV Core-core repulsion = 14572.212072 eV Total energy + Delta-G solvation = -2580.890474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33716 -38.19184 -35.73925 -34.53102 -33.32843 -31.96957 -29.48159 -28.61697 -26.49174 -24.73876 -23.29625 -22.67618 -21.76061 -19.74571 -17.99395 -17.17196 -16.62274 -16.36567 -15.97250 -15.60645 -14.90012 -14.74400 -14.44872 -13.83566 -13.70763 -13.44778 -13.33183 -13.10706 -12.94167 -12.87822 -12.44765 -12.37843 -12.17707 -11.95817 -11.74282 -11.43693 -11.22496 -11.04553 -10.36075 -10.17040 -9.95767 -8.99716 -7.87185 -5.41557 0.52840 0.74634 1.42208 1.46291 1.52095 2.41611 3.08849 3.28767 3.33396 4.00177 4.10704 4.14673 4.22435 4.35298 4.38865 4.44807 4.50938 4.68540 4.76023 4.86237 4.93450 4.95388 5.01415 5.04651 5.15364 5.32221 5.36781 5.40478 5.45648 5.53760 5.59010 5.78136 5.84827 6.14491 7.08623 7.74173 8.05701 8.54478 9.07616 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.011713 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.913052 B = 2390.010316 C = 3334.851534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.129 4.129 4 C 0.151 3.849 5 N -0.561 5.561 6 C -0.253 4.253 7 H 0.093 0.907 8 C -0.051 4.051 9 N -0.924 5.924 10 Si 0.976 3.024 11 H -0.300 1.300 12 H -0.297 1.297 13 H -0.260 1.260 14 C 0.423 3.577 15 N -0.322 5.322 16 N -0.291 5.291 17 C -0.001 4.001 18 C -0.137 4.137 19 C -0.075 4.075 20 C -0.082 4.082 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.247 0.753 31 H 0.184 0.816 32 H 0.164 0.836 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -9.707 3.761 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.169 4.169 4 C 0.027 3.973 5 N -0.282 5.282 6 C -0.382 4.382 7 H 0.111 0.889 8 C -0.246 4.246 9 N -0.570 5.570 10 Si 0.805 3.195 11 H -0.228 1.228 12 H -0.224 1.224 13 H -0.185 1.185 14 C 0.187 3.813 15 N -0.166 5.166 16 N -0.131 5.131 17 C -0.168 4.168 18 C -0.165 4.165 19 C -0.089 4.089 20 C -0.139 4.139 21 H 0.090 0.910 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.181 0.819 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.951 -8.900 3.423 9.583 hybrid contribution 1.414 0.818 -0.610 1.744 sum 0.464 -8.083 2.813 8.571 Atomic orbital electron populations 1.21747 0.95531 1.02084 1.01234 1.21440 0.96221 0.94979 1.02524 1.22075 0.97443 0.97261 1.00147 1.21140 0.92671 0.82470 1.01025 1.41519 1.75014 1.10712 1.00947 1.19656 1.33166 0.99979 0.85364 0.88892 1.25525 1.00287 0.98848 0.99920 1.69553 1.46101 1.16295 1.25095 0.85109 0.76080 0.78465 0.79851 1.22827 1.22350 1.18453 1.19108 0.88710 0.86965 0.86567 1.72803 1.29642 1.06511 1.07674 1.72520 1.24011 1.16410 1.00167 1.24284 0.92146 0.99148 1.01257 1.22257 1.00384 0.96828 0.97053 1.21518 0.95837 0.97407 0.94169 1.20449 0.95020 0.97215 1.01260 0.90971 0.93808 0.93290 0.90822 0.91500 0.95166 0.93888 0.90553 0.92920 0.94248 0.79941 0.81867 0.92458 0.89517 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.11 -3.00 5.93 30.60 0.18 -2.82 16 3 C -0.13 -4.68 5.52 30.59 0.17 -4.52 16 4 C 0.15 5.77 4.91 86.38 0.42 6.20 16 5 N -0.56 -27.09 1.86 -517.45 -0.96 -28.05 16 6 C -0.25 -13.23 9.76 84.04 0.82 -12.41 16 7 H 0.09 4.61 7.84 -2.91 -0.02 4.58 16 8 C -0.05 -2.78 5.40 84.87 0.46 -2.32 16 9 N -0.92 -52.81 9.82 21.65 0.21 -52.60 16 10 Si 0.98 45.36 29.56 68.60 2.03 47.38 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 13 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 14 C 0.42 21.10 3.69 133.14 0.49 21.59 16 15 N -0.32 -17.49 11.29 -55.11 -0.62 -18.11 16 16 N -0.29 -14.46 11.50 -57.18 -0.66 -15.12 16 17 C 0.00 -0.03 11.31 84.81 0.96 0.93 16 18 C -0.14 -5.18 9.94 22.48 0.22 -4.95 16 19 C -0.07 -3.22 4.89 -19.46 -0.10 -3.32 16 20 C -0.08 -2.97 9.90 71.24 0.70 -2.27 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 2.66 8.00 -2.39 -0.02 2.64 16 29 H 0.05 1.85 7.73 -2.38 -0.02 1.83 16 30 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.18 5.59 8.06 -2.91 -0.02 5.57 16 32 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.06 2.36 6.42 -2.39 -0.02 2.34 16 Total: -1.00 -67.30 294.20 6.10 -61.20 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.05 Total: 12.04 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.05 Total: -6.74 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -2.03 Total: -113.87 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -67.30 6.10 -61.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.068 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds