Wall clock time and date at job start Sun Mar 29 2020 22:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53000 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46915 * 180.02562 * 4 3 2 6 6 C 1.36916 * 120.00498 * 93.97236 * 5 4 3 7 7 H 1.07994 * 119.99959 * 214.48844 * 6 5 4 8 8 C 1.38806 * 120.00027 * 34.47960 * 6 5 4 9 9 N 1.31576 * 119.99598 * 21.66635 * 8 6 5 10 10 Si 1.86797 * 120.00063 * 201.93973 * 8 6 5 11 11 H 1.48504 * 109.47007 * 90.00584 * 10 8 6 12 12 H 1.48495 * 109.47022 * 209.99807 * 10 8 6 13 13 H 1.48490 * 109.47350 * 330.00401 * 10 8 6 14 14 C 1.38819 * 119.99509 * 273.96776 * 5 4 3 15 15 C 1.39097 * 119.66537 * 184.72921 * 14 5 4 16 16 C 1.38514 * 119.25815 * 179.79396 * 15 14 5 17 17 C 1.38555 * 118.58960 * 0.47297 * 16 15 14 18 18 C 1.39068 * 119.27079 * 359.74835 * 17 16 15 19 19 N 1.38976 * 119.65904 * 179.97438 * 18 17 16 20 20 N 1.32426 * 120.68954 * 0.02562 * 18 17 16 21 21 H 1.08997 * 109.47113 * 60.00454 * 1 2 3 22 22 H 1.09000 * 109.46573 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47292 * 300.00043 * 1 2 3 24 24 H 1.09004 * 109.47396 * 239.99555 * 2 1 3 25 25 H 1.08999 * 109.47387 * 120.00262 * 2 1 3 26 26 H 1.09009 * 109.46937 * 59.99792 * 3 2 1 27 27 H 1.08999 * 109.47129 * 300.00420 * 3 2 1 28 28 H 1.08992 * 109.47292 * 59.99957 * 4 3 2 29 29 H 1.09006 * 109.46927 * 299.99512 * 4 3 2 30 30 H 0.97007 * 119.99575 * 179.97438 * 9 8 6 31 31 H 1.08010 * 120.36981 * 0.02562 * 15 14 5 32 32 H 1.07994 * 120.71067 * 180.21785 * 16 15 14 33 33 H 1.07998 * 120.36812 * 179.77293 * 17 16 15 34 34 H 0.96996 * 120.00545 * 180.02562 * 19 18 17 35 35 H 0.97005 * 119.99859 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3635 3.4415 1.1844 7 1 4.1832 4.4996 1.3032 8 6 4.9044 2.7078 2.2312 9 7 5.5137 1.5670 1.9890 10 14 4.7606 3.3361 3.9844 11 1 3.5103 2.8174 4.5952 12 1 5.9280 2.8696 4.7747 13 1 4.7290 4.8207 3.9772 14 6 4.2117 3.5061 -1.1979 15 6 4.7682 4.7809 -1.1982 16 6 4.9213 5.4524 -2.4000 17 6 4.5028 4.8303 -3.5651 18 6 3.9499 3.5562 -3.4948 19 7 3.5270 2.9248 -4.6584 20 7 3.8213 2.9385 -2.3305 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9337 0.9285 -0.8890 29 1 3.9330 0.9288 0.8910 30 1 5.8920 1.0544 2.7205 31 1 5.0810 5.2404 -0.2721 32 1 5.3538 6.4416 -2.4278 33 1 4.6052 5.3291 -4.5175 34 1 3.1403 2.0364 -4.6151 35 1 3.6185 3.3728 -5.5140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:30 Heat of formation + Delta-G solvation = 34.769430 kcal Electronic energy + Delta-G solvation = -16712.505116 eV Core-core repulsion = 14131.133192 eV Total energy + Delta-G solvation = -2581.371923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.04815 -36.55289 -34.25391 -33.33079 -31.87095 -30.52183 -28.77668 -26.92124 -24.85264 -22.94461 -21.45918 -20.85831 -20.12476 -17.56738 -16.38775 -16.20392 -15.03809 -14.69372 -14.63912 -14.34325 -13.81385 -13.67525 -13.05619 -12.96794 -12.31542 -12.11569 -11.83300 -11.59001 -11.41838 -11.14693 -10.83850 -10.55675 -10.39851 -10.31957 -10.12845 -10.02347 -9.63648 -9.08626 -8.68619 -8.21875 -7.53132 -6.56688 -6.19305 -3.88909 2.65389 2.72577 3.18125 3.21424 3.23875 4.01838 4.32706 4.80515 4.95620 5.27986 5.51345 5.58064 5.69932 5.78847 6.12680 6.25362 6.26620 6.32386 6.44621 6.51511 6.52917 6.61747 6.72991 6.78830 6.91783 7.12955 7.18218 7.38924 7.49693 7.56363 7.63916 8.00840 8.11128 8.31679 8.67427 9.24148 9.34451 9.91037 10.63287 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.010185 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.233039 B = 2748.382940 C = 4034.014644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.124 3.876 5 N -0.419 5.419 6 C -0.309 4.309 7 H 0.091 0.909 8 C 0.035 3.965 9 N -0.859 5.859 10 Si 0.920 3.080 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.417 3.583 15 C -0.291 4.291 16 C -0.010 4.010 17 C -0.354 4.354 18 C 0.441 3.559 19 N -0.866 5.866 20 N -0.616 5.616 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.269 0.731 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.393 0.607 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 0.115 -5.217 7.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.165 4.165 4 C -0.001 4.001 5 N -0.110 5.110 6 C -0.438 4.438 7 H 0.108 0.892 8 C -0.170 4.170 9 N -0.494 5.494 10 Si 0.746 3.254 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.176 3.824 15 C -0.318 4.318 16 C -0.035 4.035 17 C -0.382 4.382 18 C 0.201 3.799 19 N -0.410 5.410 20 N -0.347 5.347 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.221 0.779 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.064 -0.954 -4.685 6.964 hybrid contribution 0.259 0.906 0.425 1.034 sum -4.805 -0.048 -4.260 6.422 Atomic orbital electron populations 1.21751 0.96767 1.00546 1.01423 1.21419 0.94840 0.97933 1.01437 1.21916 0.98146 0.95176 1.01283 1.21441 0.90988 0.84256 1.03369 1.42406 1.56115 1.11461 1.00982 1.19413 1.40619 0.95746 0.87976 0.89153 1.25378 0.94450 0.96676 1.00524 1.70013 1.31722 1.15010 1.32682 0.86029 0.77897 0.79397 0.82037 1.20244 1.20934 1.19281 1.18328 0.89439 0.89559 0.85087 1.21001 1.14592 0.97764 0.98445 1.20730 0.93618 0.97265 0.91901 1.20464 1.21156 0.98218 0.98406 1.17818 0.88285 0.87921 0.85869 1.42071 1.72035 1.21274 1.05636 1.66475 1.32835 1.38556 0.96822 0.93150 0.93521 0.93113 0.92479 0.92437 0.92756 0.92637 0.92944 0.87853 0.92076 0.86025 0.87285 0.87977 0.77920 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.60 5.53 -26.73 -0.15 -2.75 16 4 C 0.12 2.95 4.89 -4.04 -0.02 2.93 16 5 N -0.42 -10.80 2.65 -115.07 -0.30 -11.10 16 6 C -0.31 -8.09 8.46 -15.07 -0.13 -8.21 16 7 H 0.09 2.33 6.87 -52.49 -0.36 1.97 16 8 C 0.04 0.91 4.94 -17.45 -0.09 0.82 16 9 N -0.86 -22.92 11.32 55.49 0.63 -22.29 16 10 Si 0.92 19.82 29.61 -169.99 -5.03 14.79 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.42 10.41 7.32 -155.07 -1.14 9.27 16 15 C -0.29 -6.79 9.26 -39.16 -0.36 -7.15 16 16 C -0.01 -0.19 10.16 -39.36 -0.40 -0.59 16 17 C -0.35 -6.85 9.93 -39.16 -0.39 -7.24 16 18 C 0.44 8.94 7.74 -155.05 -1.20 7.74 16 19 N -0.87 -13.23 9.07 31.11 0.28 -12.95 16 20 N -0.62 -14.33 9.26 -11.62 -0.11 -14.44 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.29 7.58 -51.93 -0.39 0.89 16 29 H 0.10 2.65 5.34 -51.93 -0.28 2.37 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.12 2.85 6.47 -52.48 -0.34 2.51 16 32 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.39 5.64 8.95 -40.82 -0.37 5.27 16 35 H 0.40 4.76 8.82 -40.82 -0.36 4.40 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -28.54 292.76 -8.82 -37.36 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.04 Total: 13.31 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.66 Total: -9.09 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.50 Total: -60.78 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.54 -8.82 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.125 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds