Wall clock time and date at job start Sun Mar 29 2020 22:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53000 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46915 * 180.02562 * 4 3 2 6 6 C 1.36916 * 120.00498 * 93.97236 * 5 4 3 7 7 H 1.07994 * 119.99959 * 214.48844 * 6 5 4 8 8 C 1.38806 * 120.00027 * 34.47960 * 6 5 4 9 9 N 1.31576 * 119.99598 * 21.66635 * 8 6 5 10 10 Si 1.86797 * 120.00063 * 201.93973 * 8 6 5 11 11 H 1.48504 * 109.47007 * 90.00584 * 10 8 6 12 12 H 1.48495 * 109.47022 * 209.99807 * 10 8 6 13 13 H 1.48490 * 109.47350 * 330.00401 * 10 8 6 14 14 C 1.38819 * 119.99509 * 273.96776 * 5 4 3 15 15 C 1.39097 * 119.66537 * 184.72921 * 14 5 4 16 16 C 1.38514 * 119.25815 * 179.79396 * 15 14 5 17 17 C 1.38555 * 118.58960 * 0.47297 * 16 15 14 18 18 C 1.39068 * 119.27079 * 359.74835 * 17 16 15 19 19 N 1.38976 * 119.65904 * 179.97438 * 18 17 16 20 20 N 1.32426 * 120.68954 * 0.02562 * 18 17 16 21 21 H 1.08997 * 109.47113 * 60.00454 * 1 2 3 22 22 H 1.09000 * 109.46573 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47292 * 300.00043 * 1 2 3 24 24 H 1.09004 * 109.47396 * 239.99555 * 2 1 3 25 25 H 1.08999 * 109.47387 * 120.00262 * 2 1 3 26 26 H 1.09009 * 109.46937 * 59.99792 * 3 2 1 27 27 H 1.08999 * 109.47129 * 300.00420 * 3 2 1 28 28 H 1.08992 * 109.47292 * 59.99957 * 4 3 2 29 29 H 1.09006 * 109.46927 * 299.99512 * 4 3 2 30 30 H 0.97007 * 119.99575 * 179.97438 * 9 8 6 31 31 H 1.08010 * 120.36981 * 0.02562 * 15 14 5 32 32 H 1.07994 * 120.71067 * 180.21785 * 16 15 14 33 33 H 1.07998 * 120.36812 * 179.77293 * 17 16 15 34 34 H 0.96996 * 120.00545 * 180.02562 * 19 18 17 35 35 H 0.97005 * 119.99859 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3635 3.4415 1.1844 7 1 4.1832 4.4996 1.3032 8 6 4.9044 2.7078 2.2312 9 7 5.5137 1.5670 1.9890 10 14 4.7606 3.3361 3.9844 11 1 3.5103 2.8174 4.5952 12 1 5.9280 2.8696 4.7747 13 1 4.7290 4.8207 3.9772 14 6 4.2117 3.5061 -1.1979 15 6 4.7682 4.7809 -1.1982 16 6 4.9213 5.4524 -2.4000 17 6 4.5028 4.8303 -3.5651 18 6 3.9499 3.5562 -3.4948 19 7 3.5270 2.9248 -4.6584 20 7 3.8213 2.9385 -2.3305 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9337 0.9285 -0.8890 29 1 3.9330 0.9288 0.8910 30 1 5.8920 1.0544 2.7205 31 1 5.0810 5.2404 -0.2721 32 1 5.3538 6.4416 -2.4278 33 1 4.6052 5.3291 -4.5175 34 1 3.1403 2.0364 -4.6151 35 1 3.6185 3.3728 -5.5140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:29 Heat of formation + Delta-G solvation = 18.926557 kcal Electronic energy + Delta-G solvation = -16713.192114 eV Core-core repulsion = 14131.133192 eV Total energy + Delta-G solvation = -2582.058922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75391 -38.28741 -35.75365 -34.93515 -33.64234 -32.24593 -30.34853 -28.58098 -26.66831 -24.54727 -23.10966 -22.46519 -21.78890 -19.33233 -18.12982 -17.77979 -16.75468 -16.34069 -16.21321 -15.95163 -15.46165 -15.32861 -14.71031 -14.47129 -13.87858 -13.71644 -13.40677 -13.23608 -13.07620 -12.86829 -12.46205 -12.13525 -12.02951 -11.89631 -11.75899 -11.61193 -11.34841 -10.85827 -10.45182 -9.94184 -9.23765 -8.39681 -7.98136 -5.86037 0.97605 1.03661 1.43645 1.48213 1.55419 2.26473 2.82770 2.92553 3.27400 3.53765 4.11891 4.16560 4.27499 4.35347 4.56111 4.73724 4.80260 4.88419 4.89789 4.94597 5.03222 5.05854 5.14213 5.21271 5.38845 5.44239 5.47252 5.51152 5.65392 5.86277 6.01822 6.22752 6.59506 6.75488 6.93398 7.47467 7.56235 8.10311 8.73088 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.010185 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.233039 B = 2748.382940 C = 4034.014644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.111 4.111 4 C 0.132 3.868 5 N -0.445 5.445 6 C -0.325 4.325 7 H 0.084 0.916 8 C -0.006 4.006 9 N -0.893 5.893 10 Si 0.985 3.015 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.262 1.262 14 C 0.395 3.605 15 C -0.326 4.326 16 C -0.002 4.002 17 C -0.342 4.342 18 C 0.428 3.572 19 N -0.843 5.843 20 N -0.635 5.635 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.270 0.730 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.400 0.600 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 0.757 -6.590 8.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.150 4.150 4 C 0.008 3.992 5 N -0.138 5.138 6 C -0.454 4.454 7 H 0.101 0.899 8 C -0.208 4.208 9 N -0.530 5.530 10 Si 0.809 3.191 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.186 1.186 14 C 0.156 3.844 15 C -0.354 4.354 16 C -0.027 4.027 17 C -0.370 4.370 18 C 0.187 3.813 19 N -0.389 5.389 20 N -0.367 5.367 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.228 0.772 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.853 -0.300 -6.141 8.488 hybrid contribution 0.524 0.769 0.566 1.089 sum -5.329 0.469 -5.575 7.727 Atomic orbital electron populations 1.21699 0.94290 1.02257 1.01612 1.21390 0.96950 0.95232 1.01596 1.21751 0.95902 0.97412 0.99906 1.21294 0.92832 0.83696 1.01340 1.42535 1.58022 1.11945 1.01287 1.19550 1.41087 0.95772 0.88957 0.89864 1.26174 0.93850 0.96854 1.03948 1.70113 1.32941 1.16291 1.33694 0.85041 0.77833 0.79037 0.77203 1.19741 1.20637 1.18636 1.18671 0.90008 0.90212 0.85533 1.21072 1.16787 0.98055 0.99470 1.21148 0.92277 0.98458 0.90864 1.20943 1.18708 0.97619 0.99757 1.18290 0.88087 0.88739 0.86223 1.41985 1.70545 1.21408 1.05012 1.66486 1.33411 1.39366 0.97409 0.92839 0.91035 0.93072 0.92013 0.92601 0.94137 0.93706 0.94583 0.89892 0.92004 0.87388 0.83693 0.84048 0.77155 0.75121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.11 16 2 C -0.11 -3.83 5.93 30.59 0.18 -3.65 16 3 C -0.11 -4.69 5.53 30.59 0.17 -4.52 16 4 C 0.13 6.61 4.89 86.38 0.42 7.04 16 5 N -0.44 -23.87 2.65 -517.98 -1.37 -25.24 16 6 C -0.32 -17.73 8.46 84.04 0.71 -17.02 16 7 H 0.08 4.50 6.87 -2.91 -0.02 4.48 16 8 C -0.01 -0.32 4.94 84.87 0.42 0.10 16 9 N -0.89 -49.44 11.32 21.65 0.24 -49.19 16 10 Si 0.99 41.56 29.61 68.60 2.03 43.59 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.39 20.20 7.32 133.07 0.97 21.18 16 15 C -0.33 -15.41 9.26 22.54 0.21 -15.20 16 16 C 0.00 -0.09 10.16 22.41 0.23 0.14 16 17 C -0.34 -12.13 9.93 22.54 0.22 -11.91 16 18 C 0.43 16.47 7.74 133.05 1.03 17.50 16 19 N -0.84 -23.28 9.07 -55.48 -0.50 -23.79 16 20 N -0.63 -29.57 9.26 -190.66 -1.77 -31.33 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 29 H 0.08 4.47 5.34 -2.38 -0.01 4.46 16 30 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 31 H 0.11 5.26 6.47 -2.91 -0.02 5.24 16 32 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 33 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.40 10.48 8.95 -92.71 -0.83 9.65 16 35 H 0.42 8.31 8.82 -92.70 -0.82 7.49 16 Total: -1.00 -63.57 292.76 3.37 -60.20 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.55 Total: 35.21 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.28 Total: -9.45 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -3.39 Total: -129.55 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -63.57 3.37 -60.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.129 kcal (2) G-P(sol) polarization free energy of solvation -63.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds