Wall clock time and date at job start Sun Mar 29 2020 22:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46837 * 2 1 4 4 C 1.53010 * 109.46964 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.46747 * 179.97438 * 4 3 2 6 6 C 1.36862 * 120.00069 * 269.99636 * 5 4 3 7 7 H 1.08000 * 120.00251 * 7.26934 * 6 5 4 8 8 C 1.38784 * 119.99967 * 187.26921 * 6 5 4 9 9 N 1.31597 * 119.99846 * 352.28444 * 8 6 5 10 10 Si 1.86798 * 119.99958 * 172.28465 * 8 6 5 11 11 H 1.48506 * 109.47137 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47120 * 119.99771 * 10 8 6 13 13 H 1.48497 * 109.47369 * 240.00183 * 10 8 6 14 14 C 1.38908 * 120.00048 * 90.00325 * 5 4 3 15 15 N 1.32407 * 119.75574 * 264.37561 * 14 5 4 16 16 C 1.31923 * 121.69434 * 179.97438 * 15 14 5 17 17 C 1.38178 * 121.01736 * 359.97438 * 16 15 14 18 18 C 1.38751 * 119.41131 * 359.97438 * 17 16 15 19 19 C 1.38965 * 118.44221 * 0.02562 * 18 17 16 20 20 N 1.39768 * 120.52485 * 179.97438 * 19 18 17 21 21 H 1.08997 * 109.47557 * 60.00151 * 1 2 3 22 22 H 1.09007 * 109.47022 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47075 * 299.99608 * 1 2 3 24 24 H 1.09004 * 109.47075 * 240.00392 * 2 1 3 25 25 H 1.08997 * 109.47557 * 119.99849 * 2 1 3 26 26 H 1.08993 * 109.47377 * 60.00030 * 3 2 1 27 27 H 1.09002 * 109.46969 * 299.99327 * 3 2 1 28 28 H 1.09002 * 109.46933 * 59.99771 * 4 3 2 29 29 H 1.08997 * 109.46627 * 299.99866 * 4 3 2 30 30 H 0.97001 * 119.99429 * 185.00046 * 9 8 6 31 31 H 1.08002 * 119.48927 * 179.71769 * 16 15 14 32 32 H 1.08010 * 120.29204 * 179.97438 * 17 16 15 33 33 H 1.08008 * 120.77832 * 180.02562 * 18 17 16 34 34 H 0.97002 * 119.99943 * 185.22129 * 20 19 18 35 35 H 0.96991 * 120.00088 * 5.21693 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2858 3.4686 -1.1868 7 1 3.9961 3.0048 -2.1181 8 6 4.8889 4.7185 -1.1922 9 7 5.1038 5.3503 -0.0580 10 14 5.3956 5.5040 -2.8095 11 1 5.0461 4.5963 -3.9317 12 1 4.6821 6.7955 -2.9775 13 1 6.8609 5.7450 -2.8052 14 6 4.2902 3.4790 1.2014 15 7 3.3539 4.2621 1.7144 16 6 3.5333 4.9020 2.8540 17 6 4.7136 4.7784 3.5618 18 6 5.7244 3.9679 3.0651 19 6 5.5104 3.3049 1.8627 20 7 6.4991 2.4780 1.3222 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9563 -0.8901 28 1 3.9329 0.9289 -0.8909 29 1 3.9336 0.9287 0.8891 30 1 5.4582 6.2532 -0.0655 31 1 2.7472 5.5354 3.2376 32 1 4.8482 5.3079 4.4935 33 1 6.6557 3.8551 3.6003 34 1 6.3727 2.0792 0.4470 35 1 7.3116 2.3031 1.8221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:32 Heat of formation + Delta-G solvation = 51.368044 kcal Electronic energy + Delta-G solvation = -17128.842595 eV Core-core repulsion = 14548.190442 eV Total energy + Delta-G solvation = -2580.652153 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.86434 -36.01356 -34.07330 -33.55496 -31.29279 -30.03724 -28.11273 -27.06937 -24.35297 -22.72366 -21.53468 -20.76103 -20.13543 -17.61522 -16.13879 -15.67363 -15.23602 -14.85239 -14.46860 -13.76849 -13.62653 -13.42749 -13.17382 -12.32810 -12.21550 -11.94591 -11.75540 -11.39596 -11.09197 -10.96141 -10.79929 -10.64139 -10.51778 -10.21555 -9.96267 -9.89069 -9.76707 -8.99386 -8.10099 -7.99518 -7.02682 -6.49926 -5.51153 -3.25209 2.75332 2.94728 3.36314 3.41960 3.44721 4.42157 4.97072 5.09076 5.38340 5.40238 5.42079 5.56394 5.60280 5.95078 6.00113 6.15439 6.16586 6.25380 6.31594 6.34324 6.37238 6.49126 6.59601 6.80472 6.86173 6.94774 7.16060 7.26046 7.49500 7.69609 7.86838 8.22366 8.56807 8.83556 9.26255 9.71017 9.94504 10.20218 11.27204 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.011677 C = 0.008318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.583837 B = 2397.225959 C = 3365.226412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.157 3.843 5 N -0.548 5.548 6 C -0.261 4.261 7 H 0.082 0.918 8 C 0.004 3.996 9 N -0.887 5.887 10 Si 0.913 3.087 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.440 3.560 15 N -0.465 5.465 16 C 0.048 3.952 17 C -0.173 4.173 18 C -0.175 4.175 19 C 0.178 3.822 20 N -0.871 5.871 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.256 0.744 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.400 0.600 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -7.559 3.457 8.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.030 3.970 5 N -0.267 5.267 6 C -0.389 4.389 7 H 0.100 0.900 8 C -0.196 4.196 9 N -0.530 5.530 10 Si 0.744 3.256 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.203 3.797 15 N -0.178 5.178 16 C -0.109 4.109 17 C -0.194 4.194 18 C -0.206 4.206 19 C 0.068 3.932 20 N -0.410 5.410 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.229 0.771 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.726 -7.256 3.005 8.041 hybrid contribution 1.324 0.722 -0.533 1.599 sum -0.402 -6.534 2.472 6.998 Atomic orbital electron populations 1.21755 0.96625 1.00528 1.01732 1.21504 0.95277 0.98202 1.01045 1.22227 0.98591 0.94539 1.02517 1.20853 0.92030 0.84830 0.99241 1.41380 1.75297 1.09085 1.00928 1.19309 1.33486 1.01735 0.84367 0.90006 1.24868 0.99966 0.97706 0.97018 1.69488 1.48409 1.11995 1.23146 0.86035 0.77860 0.79074 0.82657 1.20424 1.21842 1.21792 1.16976 0.86578 0.89764 0.86345 1.67404 1.34397 1.06229 1.09777 1.21736 0.96089 1.00664 0.92405 1.21296 0.95551 1.01727 1.00869 1.20428 0.99542 1.03193 0.97410 1.18846 0.89812 0.91639 0.92868 1.42114 1.19963 1.55998 1.22971 0.92954 0.93596 0.92987 0.92596 0.92764 0.92180 0.92068 0.92788 0.94243 0.93142 0.86250 0.87900 0.87986 0.77113 0.79472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.14 -2.57 5.54 -26.72 -0.15 -2.72 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.55 -13.29 1.81 -114.88 -0.21 -13.50 16 6 C -0.26 -6.88 9.77 -15.10 -0.15 -7.03 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C 0.00 0.10 5.44 -17.45 -0.09 0.00 16 9 N -0.89 -25.38 9.77 55.49 0.54 -24.84 16 10 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.44 10.98 3.57 -154.83 -0.55 10.42 16 15 N -0.47 -12.00 9.83 -12.25 -0.12 -12.12 16 16 C 0.05 1.10 11.17 -17.53 -0.20 0.90 16 17 C -0.17 -3.60 10.10 -39.41 -0.40 -4.00 16 18 C -0.17 -3.70 10.04 -39.12 -0.39 -4.09 16 19 C 0.18 4.05 6.09 -83.36 -0.51 3.54 16 20 N -0.87 -16.89 9.07 32.63 0.30 -16.60 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.04 0.75 8.05 -51.93 -0.42 0.33 16 30 H 0.26 7.39 8.32 -40.82 -0.34 7.05 16 31 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.40 7.96 8.15 -40.82 -0.33 7.63 16 35 H 0.38 6.10 8.86 -40.82 -0.36 5.74 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -30.30 295.02 -7.63 -37.92 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.30 Total: 11.20 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.25 Total: -3.39 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: 0.51 Total: -67.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.30 -7.63 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.289 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds